Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00666 Brassica carinata HOM05D000586 ORTHO05D008681 1.7e-112 409.5 216 100.0
C01p04060 Brassica napus HOM05D000586 ORTHO05D003356 1.1e-111 406.8 214 99.5
BolC1t00397H Brassica oleracea HOM05D000586 ORTHO05D003356 1.2e-110 403.3 213 99.5
A01p03780 Brassica napus HOM05D000586 ORTHO05D003356 5.5e-108 394.4 214 96.7
BraA01t00363Z Brassica rapa HOM05D000586 ORTHO05D008681 6.1e-107 391.0 216 95.8
BcaNung04297 Brassica carinata HOM05D000586 ORTHO05D008681 3.7e-104 381.7 216 94.0
Sp7g32510 Schrenkiella parvula HOM05D000586 ORTHO05D008681 7.7e-102 374.0 216 93.1
BolC7t46503H Brassica oleracea HOM05D000586 ORTHO05D008681 2.2e-101 372.5 217 92.2
C07p60740 Brassica napus HOM05D000586 ORTHO05D001010 1.1e-100 370.2 216 91.2
Thhalv10026220m.g Eutrema salsugineum HOM05D000586 ORTHO05D008681 1.7e-96 356.3 216 89.4
CARHR243030 Cardamine hirsuta HOM05D000586 ORTHO05D008681 3.1e-95 352.1 221 87.8
Carub.0007s0556 Capsella rubella HOM05D000586 ORTHO05D008681 3.5e-94 348.6 221 86.0
AT4G34730 Arabidopsis thaliana HOM05D000586 ORTHO05D008681 7.7e-94 347.4 217 87.6
A03p63110 Brassica napus HOM05D000586 ORTHO05D001010 1.0e-93 347.1 215 87.4
BraA03t15387Z Brassica rapa HOM05D000586 ORTHO05D008681 1.0e-93 347.1 215 87.4
AL7G16470 Arabidopsis lyrata HOM05D000586 ORTHO05D008681 8.5e-93 344.0 221 85.5
Aa31LG2G15790 Aethionema arabicum HOM05D000586 ORTHO05D008681 3.8e-85 318.5 221 79.6
THA.LOC104807288 Tarenaya hassleriana HOM05D000586 ORTHO05D008681 4.9e-80 301.6 221 76.9
Ciclev10029227m.g Citrus clementina HOM05D000586 ORTHO05D008681 4.1e-71 271.9 222 71.2
Gorai.001G244200 Gossypium raimondii HOM05D000586 ORTHO05D008681 4.6e-70 268.5 212 71.7
Gohir.D13G090500 Gossypium hirsutum HOM05D000586 ORTHO05D008681 5.9e-70 268.1 212 71.7
Thecc.02G073100 Theobroma cacao HOM05D000586 ORTHO05D008681 5.9e-70 268.1 212 72.6
Duzib052G0483 Durio zibethinus HOM05D000586 ORTHO05D008681 1.0e-69 267.3 202 74.8
Manes.11G092006 Manihot esculenta HOM05D000586 ORTHO05D008681 1.1e-68 263.8 219 69.9
Cpa.g.sc150.2 Carica papaya HOM05D000586 ORTHO05D008681 9.5e-68 260.8 212 71.7
TAR381G1606 Trochodendron aralioides HOM05D000586 ORTHO05D008681 1.0e-66 257.3 171 80.7
CiPaw.05G074600 Carya illinoinensis HOM05D000586 ORTHO05D008681 3.1e-66 255.8 222 67.1
Nn6g32309 Nelumbo nucifera HOM05D000586 ORTHO05D008681 3.1e-66 255.8 171 79.5
Potri.004G164200 Populus trichocarpa HOM05D000586 ORTHO05D008681 4.0e-66 255.4 227 67.0
Prupe.8G082300 Prunus persica HOM05D000586 ORTHO05D008681 1.2e-65 253.8 212 67.9
MD00G1066800 Malus domestica HOM05D000586 ORTHO05D008681 1.5e-65 253.4 214 67.3
PGR042G2570 Punica granatum HOM05D000586 ORTHO05D008681 2.0e-65 253.1 172 80.2
Sabra04G0110300 Salix brachista HOM05D000586 ORTHO05D008681 2.0e-65 253.1 227 66.5
QL11p046751 Quercus lobata HOM05D000586 ORTHO05D008681 9.8e-65 250.8 169 78.7
FAN24G2793 Fragaria x ananassa HOM05D000586 ORTHO05D008681 1.7e-64 250.0 209 67.0
FvH4_2g10740 Fragaria vesca HOM05D000586 ORTHO05D008681 2.9e-64 249.2 209 67.0
ClCG11G003770 Citrullus lanatus HOM05D000586 ORTHO05D008681 3.7e-64 248.8 220 67.7
FAN20G2293 Fragaria x ananassa HOM05D000586 ORTHO05D008681 3.7e-64 248.8 170 77.6
RcHm_v2.0_Chr6g0268531 Rosa chinensis HOM05D000586 ORTHO05D008681 6.4e-64 248.1 201 68.2
Lj1g0002953 Lotus japonicus HOM05D000586 ORTHO05D008681 8.3e-64 247.7 172 78.5
Nitab4.5_0010885g0020 Nicotiana tabacum HOM05D000586 ORTHO05D008681 1.4e-63 246.9 209 67.0
MBI05_g26502_MAGBIO Magnolia biondii HOM05D000586 ORTHO05D008681 3.2e-63 245.7 172 76.7
Actinidia20476 Actinidia chinensis HOM05D000586 ORTHO05D008681 4.1e-63 245.4 188 75.5
Dinv41988 Davidia involucrata HOM05D000586 ORTHO05D008681 7.0e-63 244.6 172 78.5
Eucgr.G01743 Eucalyptus grandis HOM05D000586 ORTHO05D008681 1.6e-62 243.4 167 79.0
Haze_02225 Corylus avellana HOM05D000586 ORTHO05D008681 2.0e-62 243.0 220 65.0
Sed0014971 Sechium edule HOM05D000586 ORTHO05D008681 2.0e-62 243.0 225 64.9
Nitab4.5_0002096g0050 Nicotiana tabacum HOM05D000586 ORTHO05D008681 2.7e-62 242.7 208 66.8
Peaxi162Scf00362g01176 Petunia axillaris HOM05D000586 ORTHO05D008681 3.5e-62 242.3 178 77.0
CsaV3_2G015360 Cucumis sativus L. HOM05D000586 ORTHO05D008681 4.6e-62 241.9 175 75.4
Lalb_Chr16g0391381 Lupinus albus HOM05D000586 ORTHO05D008681 4.6e-62 241.9 166 78.3
arahy.Tifrunner.gnm1.ann1.89FNHL Arachis hypogaea HOM05D000586 ORTHO05D008681 6.0e-62 241.5 169 79.3
FAN15G3000 Fragaria x ananassa HOM05D000586 ORTHO05D008681 6.0e-62 241.5 167 77.8
EL10Ac9g21609 Beta vulgaris HOM05D000586 ORTHO05D008681 2.3e-61 239.6 175 72.6
VMungo1309G1236 Vigna mungo HOM05D000586 ORTHO05D008681 5.0e-61 238.4 197 66.5
arahy.Tifrunner.gnm1.ann1.I5P0FU Arachis hypogaea HOM05D000586 ORTHO05D008681 6.6e-61 238.0 166 80.7
Aqoxy5G01445 Aquilegia oxysepala HOM05D000586 ORTHO05D008681 1.5e-60 236.9 217 64.5
Dinv23444 Davidia involucrata HOM05D000586 ORTHO05D008681 2.5e-60 236.1 218 64.7
Glyma.06G007300 Glycine max HOM05D000586 ORTHO05D008681 3.3e-60 235.7 173 73.4
SalBow6G4654 Salvia bowleyana HOM05D000586 ORTHO05D008681 3.3e-60 235.7 174 77.0
Lsat_1_v5_gn_4_67621 Lactuca sativa HOM05D000586 ORTHO05D008681 7.3e-60 234.6 200 67.5
Solyc01g110550.3 Solanum lycopersicum HOM05D000586 ORTHO05D008681 1.2e-59 233.8 179 74.9
Phvul.009G002100 Phaseolus vulgaris HOM05D000586 ORTHO05D008681 1.6e-59 233.4 195 66.2
Ah.01g018630 Amaranthus hybridus HOM05D000586 ORTHO05D008681 3.6e-59 232.3 227 59.9
ECA234G3975 Erigeron canadensis HOM05D000586 ORTHO05D008681 6.2e-59 231.5 159 79.2
DCAR_022927 Daucus carota HOM05D000586 ORTHO05D008681 8.1e-59 231.1 204 64.7
PSO170G6416 Papaver somniferum HOM05D000586 ORTHO05D008681 1.4e-58 230.3 206 64.1
Sopen01g052670 Solanum pennellii HOM05D000586 ORTHO05D008681 1.8e-58 229.9 179 73.2
PSO210G2611 Papaver somniferum HOM05D000586 ORTHO05D008681 3.1e-58 229.2 206 64.1
Zm00001eb377790 Zea mays HOM05D000586 ORTHO05D008681 5.2e-58 228.4 199 66.8
Gohir.A13G086800 Gossypium hirsutum HOM05D000586 ORTHO05D008681 8.9e-58 227.6 212 65.6
Hund06294 Selenicereus undatus HOM05D000586 ORTHO05D008681 8.9e-58 227.6 173 69.4
MSTRG.20023 Avicennia marina HOM05D000586 ORTHO05D008681 1.2e-57 227.3 217 63.1
COL.COLO4_10614 Corchorus olitorius HOM05D000586 ORTHO05D008681 1.2e-57 227.3 202 66.3
PGSC0003DMG400001616 Solanum tuberosum HOM05D000586 ORTHO05D008681 1.2e-57 227.3 177 73.4
HanXRQChr10g0294191 Helianthus annuus HOM05D000586 ORTHO05D008681 1.5e-57 226.9 169 74.6
Ca_15328_v3 Cicer arietinum L. HOM05D000586 ORTHO05D008681 9.8e-57 224.2 182 69.8
AUR62010365 Chenopodium quinoa HOM05D000586 ORTHO05D008681 1.7e-56 223.4 215 60.0
Migut.B00127 Erythranthe guttata HOM05D000586 ORTHO05D008681 1.7e-56 223.4 177 74.6
MELO3C020750.2 Cucumis melo HOM05D000586 ORTHO05D008681 2.2e-56 223.0 244 58.2
CAN.G1329.7 Capsicum annuum HOM05D000586 ORTHO05D008681 6.4e-56 221.5 212 62.3
CDE01G0237 Ceratophyllum demersum HOM05D000586 ORTHO05D008681 8.3e-56 221.1 184 68.5
Sc08g0000980 Simmondsia chinensis HOM05D000586 ORTHO05D008681 8.3e-56 221.1 190 69.5
AUR62016853 Chenopodium quinoa HOM05D000586 ORTHO05D008681 1.4e-55 220.3 207 62.8
Oeu020677.1 Olea europaea HOM05D000586 ORTHO05D008681 2.4e-55 219.5 171 73.7
Medtr3g117600 Medicago truncatula HOM05D000586 ORTHO05D008681 3.2e-55 219.2 181 66.9
Psat5g000280 Pisum sativum HOM05D000586 ORTHO05D008681 9.2e-55 217.6 195 64.1
Os06g0137600 Oryza sativa ssp. japonica HOM05D000586 ORTHO05D008681 1.6e-54 216.9 188 67.0
Hma1.2p1_0032F.1_g019990 Hydrangea macrophylla HOM05D000586 ORTHO05D008681 3.5e-54 215.7 124 91.1
Lj9A383T66 Lonicera japonica HOM05D000586 ORTHO05D008681 2.3e-53 213.0 179 65.9
Duzib132G1196 Durio zibethinus HOM05D000586 ORTHO05D008681 4.3e-52 208.8 234 57.3
GSVIVG01024154001 Vitis vinifera HOM05D000586 ORTHO05D008681 7.3e-52 208.0 148 79.7
CANSAT11G1696 Cannabis sativa HOM05D000586 ORTHO05D008681 1.2e-51 207.2 137 80.3
HPP92_020672 Vanilla planifolia HOM05D000586 ORTHO05D008681 2.1e-51 206.5 225 57.8
unitig_60.g25431 Utricularia gibba HOM05D000586 ORTHO05D008681 8.1e-51 204.5 163 71.8
vmacro02046 Vaccinium macrocarpon HOM05D000586 ORTHO05D008681 1.1e-50 204.1 124 86.3
vmacro22695 Vaccinium macrocarpon HOM05D000586 ORTHO05D008681 1.1e-50 204.1 124 86.3
SMO337G0057 Selaginella moellendorffii HOM05D000586 ORTHO05D008681 2.3e-50 203.0 162 64.2
Lj9A385G33 Lonicera japonica HOM05D000586 ORTHO05D008681 2.0e-49 199.9 169 65.7
VMungo1309G1424 Vigna mungo HOM05D000586 ORTHO05D008681 1.3e-48 197.2 135 74.8
Cc02_g16800 Coffea canephora HOM05D000586 ORTHO05D008681 1.1e-47 194.1 149 73.8
Rhsim11G0184900 Rhododendron simsii HOM05D000586 ORTHO05D008681 7.1e-47 191.4 191 61.3
Oeu046110.1 Olea europaea HOM05D000586 ORTHO05D008681 6.0e-46 188.3 157 72.0
SGA_v2.0_scaffold58G20435 Striga asiatica HOM05D000586 ORTHO05D008681 1.5e-44 183.7 259 48.6
AagrBONN_evm.TU.Sc2ySwM_228.435 Anthoceros agrestis HOM05D000586 ORTHO05D008681 3.3e-44 182.6 154 63.0
Pp3c12_16410 Physcomitrium patens HOM05D000586 ORTHO05D008681 4.7e-43 178.7 165 58.8
CBR_g38914 Chara braunii HOM05D000586 ORTHO05D008681 1.4e-42 177.2 133 65.4
TPR.G32182 Trifolium pratense HOM05D000586 ORTHO05D008681 3.2e-39 166.0 148 62.8
Mapoly0005s0278 Marchantia polymorpha HOM05D000586 ORTHO05D008681 2.7e-38 162.9 202 47.0
CSS0047409 Camellia sinensis var. sinensis HOM05D000586 ORTHO05D008681 8.4e-32 141.4 108 71.3
MCO15G163 Micromonas commoda HOM05D000586 ORTHO05D008681 1.6e-30 137.1 174 46.6
Sed0014045 Sechium edule HOM05D000586 ORTHO05D008681 2.5e-28 129.8 167 51.5
SEGI_30788 Sequoiadendron giganteum HOM05D000586 ORTHO05D008681 1.4e-26 124.0 98 63.3
ATR0910G002 Amborella trichopoda HOM05D000586 ORTHO05D008681 3.1e-26 122.9 119 60.5
Atru.chr5.3178 Acer truncatum HOM05D000586 ORTHO05D008681 6.9e-26 121.7 98 69.4
Cre02.g145000 Chlamydomonas reinhardtii HOM05D000586 ORTHO05D008681 4.9e-24 115.5 177 42.4
BcaB07g33434 Brassica carinata HOM05D000586 ORTHO05D008681 4.2e-23 112.5 71 87.3
VMungo0720G0167 Vigna mungo HOM05D000028 ORTHO05D001812 7.9e-22 108.2 88 68.2
PRCOL_00004217 Prasinoderma coloniale HOM05D000586 ORTHO05D008681 1.8e-21 107.1 133 43.6
Nn017s41473 Nelumbo nucifera HOM05D000586 ORTHO05D008681 7.4e-20 101.7 76 71.1
MD10G1061600 Malus domestica HOM05D000586 ORTHO05D008681 1.1e-15 87.8 147 42.9


User provided reference genes

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