Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 0.0e+00 1610.9 1096 100.0
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 0.0e+00 1293.1 1178 83.0
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 0.0e+00 1287.7 1144 84.1
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 0.0e+00 1265.0 1116 84.0
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 0.0e+00 1259.6 1175 81.6
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 0.0e+00 1238.0 1158 81.2
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 0.0e+00 1164.1 1106 81.0
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 0.0e+00 1162.1 1112 80.8
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 0.0e+00 1128.6 1106 80.5
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 2.4e-284 982.6 1124 72.7
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 4.3e-265 918.7 969 78.9
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 4.3e-217 759.2 1103 64.2
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 1.8e-170 604.4 679 70.4
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 7.0e-167 592.4 1051 59.4
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 3.7e-160 570.1 1117 56.4
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 7.7e-158 562.4 1122 56.3
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.2e-153 548.5 1120 54.2
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 4.9e-152 543.1 1144 50.9
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 1.4e-151 541.6 1124 54.4
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 7.0e-151 539.3 1154 53.2
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 1.6e-150 538.1 1138 48.6
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 5.6e-148 529.6 1120 49.8
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 1.0e-146 525.4 975 58.3
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 4.0e-146 523.5 1109 50.4
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 3.4e-145 520.4 1067 55.0
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 3.7e-144 516.9 1134 49.5
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 4.9e-144 516.5 1116 50.1
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 6.4e-144 516.2 1163 44.3
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 1.9e-143 514.6 826 65.0
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.9e-143 514.6 1067 55.2
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 3.2e-143 513.8 1123 53.4
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 1.3e-141 508.4 1057 55.1
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 1.2e-139 501.9 1091 54.0
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 4.7e-139 500.0 1147 53.0
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 2.3e-138 497.7 1092 49.4
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 5.8e-137 493.0 1111 54.3
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 9.8e-137 492.3 1110 54.2
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 2.9e-136 490.7 256 95.3
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 8.3e-136 489.2 1097 52.2
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 1.1e-135 488.8 1097 52.1
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 1.2e-134 485.3 1148 52.0
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 1.6e-134 485.0 853 62.4
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 2.1e-134 484.6 1110 54.1
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 4.6e-134 483.4 685 65.8
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 1.7e-133 481.5 1164 51.7
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 5.1e-133 479.9 826 64.4
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 2.5e-132 477.6 1065 55.8
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 1.2e-131 475.3 1179 46.0
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 2.1e-131 474.6 1110 52.6
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 6.2e-131 473.0 831 59.4
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 5.2e-130 469.9 1086 52.3
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 2.6e-129 467.6 1096 53.6
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 3.4e-129 467.2 1018 56.0
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 2.2e-128 464.5 1110 52.7
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 8.3e-128 462.6 953 57.0
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 1.4e-127 461.8 922 53.4
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 7.1e-127 459.5 1135 51.7
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 1.2e-126 458.8 1108 52.3
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 2.7e-126 457.6 1106 52.5
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 3.9e-125 453.8 1037 54.6
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 1.1e-124 452.2 858 55.9
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 8.1e-123 446.0 819 63.2
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 8.9e-122 442.6 1193 44.7
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 1.5e-121 441.8 1164 49.7
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 2.6e-121 441.0 690 71.3
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 9.9e-121 439.1 1125 52.0
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 6.4e-120 436.4 1165 49.3
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 6.4e-120 436.4 1057 52.4
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.2e-118 432.2 1065 53.0
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.7e-117 428.3 1057 52.4
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 3.0e-117 427.6 1155 50.8
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 3.3e-116 424.1 862 61.3
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 5.6e-116 423.3 499 71.1
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 1.6e-115 421.8 1143 51.9
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 1.4e-114 418.7 1112 51.9
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 4.0e-114 417.2 1144 46.4
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 2.0e-113 414.8 770 59.4
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 2.0e-113 414.8 1105 50.0
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 5.8e-113 413.3 1125 48.9
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 1.7e-112 411.8 1114 50.7
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 2.2e-112 411.4 1145 50.0
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 1.6e-110 405.2 826 60.9
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 1.0e-109 402.5 1116 51.0
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 1.7e-109 401.7 1109 49.0
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 3.0e-109 401.0 832 60.6
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 1.1e-108 399.1 1103 50.7
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 9.6e-108 396.0 1038 45.8
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 9.6e-108 396.0 826 60.3
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 4.8e-107 393.7 1069 51.4
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 3.4e-105 387.5 858 58.6
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 4.9e-104 383.6 704 66.5
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 1.1e-103 382.5 698 62.5
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 1.2e-102 379.0 888 43.8
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 2.2e-96 358.2 1085 49.9
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 2.7e-94 351.3 1105 50.1
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 2.5e-92 344.7 692 55.8
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 4.6e-78 297.4 1043 51.1
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 8.8e-69 266.5 735 46.9
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 2.8e-51 208.4 164 62.8
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 6.3e-51 207.2 698 46.4
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 1.3e-48 199.5 266 83.5
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 2.0e-44 185.7 699 56.7
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 1.8e-42 179.1 298 65.4
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 5.4e-42 177.6 252 47.6
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 7.0e-42 177.2 287 74.2
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 4.5e-41 174.5 704 43.9
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 7.2e-39 167.2 278 75.5
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.3e-35 156.4 278 37.1
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.1e-34 153.3 286 35.0
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.7e-32 146.0 700 52.9
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.7e-32 146.0 123 58.5
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 8.6e-32 143.7 742 51.6
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 7.3e-31 140.6 268 73.9
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.0e-28 132.5 152 45.4
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 2.2e-27 129.0 109 59.6
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.4e-26 126.3 652 50.6
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 3.3e-23 115.2 287 27.5
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 7.3e-23 114.0 129 49.6
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 3.1e-21 108.6 107 50.5
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.0e-20 105.9 100 75.0
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.3e-19 103.2 94 51.1
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 4.1e-18 98.2 109 50.5
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 2.9e-11 75.5 252 27.0
SMO106G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 4.9e-11 74.7 69 53.6
SMO301G0041 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 2.1e-06 59.3 54 51.9
SMO245G0010 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 3.6e-06 58.5 49 57.1


User provided reference genes

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