Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00572 Brassica carinata HOM05D003759 ORTHO05D004149 3.9e-111 404.8 205 100.0
C07p58060 Brassica napus HOM05D000058 ORTHO05D000077 4.0e-108 394.8 205 97.6
BolC7t46265H Brassica oleracea HOM05D003759 ORTHO05D004149 4.0e-108 394.8 205 97.6
A03p60150 Brassica napus HOM05D003759 ORTHO05D004149 1.1e-97 360.1 205 92.2
BraA03t15060Z Brassica rapa HOM05D003759 ORTHO05D004149 1.1e-97 360.1 205 92.2
BcaNung04561 Brassica carinata HOM05D003759 ORTHO05D004149 7.6e-83 310.8 222 77.9
Sp7g28510 Schrenkiella parvula HOM05D003759 ORTHO05D004149 2.6e-67 259.2 238 66.8
C01p08320 Brassica napus HOM05D003759 ORTHO05D004149 4.1e-60 235.3 220 68.2
BraA01t00706Z Brassica rapa HOM05D003759 ORTHO05D004149 5.3e-60 235.0 219 68.5
A01p07630 Brassica napus HOM05D003759 ORTHO05D004149 1.5e-59 233.4 219 68.0
BcaC09g51852 Brassica carinata HOM05D003759 ORTHO05D004149 2.0e-59 233.0 220 67.7
BolC1t00818H Brassica oleracea HOM05D003759 ORTHO05D004149 4.5e-59 231.9 218 67.9
BcaNung02973 Brassica carinata HOM05D003759 ORTHO05D004149 4.6e-56 221.9 233 61.4
Thhalv10026294m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 1.1e-49 200.7 201 64.2
CARHR238510 Cardamine hirsuta HOM05D003759 ORTHO05D004149 3.2e-49 199.1 226 58.4
AL7G21510 Arabidopsis lyrata HOM05D003759 ORTHO05D004149 1.0e-47 194.1 229 55.5
AT4G30630 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 7.4e-46 188.0 230 54.8
Carub.0007s0993 Capsella rubella HOM05D003759 ORTHO05D004149 1.6e-40 170.2 208 54.3
THA.LOC104803918 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 1.1e-33 147.5 235 45.1
THA.LOC104819991 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 1.6e-32 143.7 237 46.0
Aa31LG2G19870 Aethionema arabicum HOM05D003759 ORTHO05D004149 1.0e-23 114.4 205 40.5
A10p15270 Brassica napus HOM05D003759 ORTHO05D004149 4.4e-22 109.0 201 37.3
Cpa.g.sc46.168 Carica papaya HOM05D003759 ORTHO05D004149 5.7e-22 108.6 244 36.1
BraA10t43608Z Brassica rapa HOM05D003759 ORTHO05D004149 9.8e-22 107.8 201 36.8
Thhalv10014665m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 2.2e-21 106.7 212 38.2
Sabra06G0139200 Salix brachista HOM05D003759 ORTHO05D004149 2.4e-20 103.2 240 36.2
Psat4g009880 Pisum sativum HOM05D003759 ORTHO05D004149 1.2e-19 100.9 248 35.5
TPR.G24855 Trifolium pratense HOM05D003759 ORTHO05D004149 1.2e-19 100.9 245 36.3
C09p49780 Brassica napus HOM05D003759 ORTHO05D004149 1.6e-19 100.5 208 35.6
GSVIVG01023625001 Vitis vinifera HOM05D003759 ORTHO05D004149 1.6e-19 100.5 218 34.9
Medtr4g130700 Medicago truncatula HOM05D003759 ORTHO05D004149 2.7e-19 99.8 245 34.7
BolC9t57829H Brassica oleracea HOM05D003759 ORTHO05D004149 4.5e-19 99.0 209 34.9
Lj4g0026574 Lotus japonicus HOM05D003759 ORTHO05D004149 4.5e-19 99.0 254 33.5
CANSAT11G0712 Cannabis sativa HOM05D003759 ORTHO05D004149 1.7e-18 97.1 248 34.7
Carub.0008s1844 Capsella rubella HOM05D003759 ORTHO05D004149 1.7e-18 97.1 221 35.3
Manes.06G035500 Manihot esculenta HOM05D003759 ORTHO05D004149 2.3e-18 96.7 245 36.3
HanXRQChr10g0313651 Helianthus annuus HOM05D003759 ORTHO05D004149 6.5e-18 95.1 228 36.8
CsaV3_1G029030 Cucumis sativus L. HOM05D003759 ORTHO05D004149 8.6e-18 94.7 241 33.6
Phvul.003G155300 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 8.6e-18 94.7 241 35.3
AT5G57910 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 1.1e-17 94.4 211 35.5
A03p12490 Brassica napus HOM05D003759 ORTHO05D004149 1.1e-17 94.4 213 38.0
Glyma.17G073100 Glycine max HOM05D003759 ORTHO05D004149 1.1e-17 94.4 244 34.8
THA.LOC104813538 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 1.1e-17 94.4 212 34.4
VMungo1215G0492 Vigna mungo HOM05D003759 ORTHO05D004149 1.5e-17 94.0 243 34.6
MELO3C010213.2 Cucumis melo HOM05D003759 ORTHO05D004149 1.9e-17 93.6 241 32.8
Migut.K00316 Erythranthe guttata HOM05D003759 ORTHO05D004149 4.2e-17 92.4 219 35.2
PGR102G0437 Punica granatum HOM05D003759 ORTHO05D004149 4.2e-17 92.4 259 33.2
ECA234G4063 Erigeron canadensis HOM05D003759 ORTHO05D004149 5.5e-17 92.0 239 34.7
TAR383G0583 Trochodendron aralioides HOM05D003759 ORTHO05D004149 5.5e-17 92.0 210 33.3
Lalb_Chr13g0300821 Lupinus albus HOM05D003759 ORTHO05D004149 7.2e-17 91.7 248 32.7
BcaB05g22386 Brassica carinata HOM05D003759 ORTHO05D004149 1.2e-16 90.9 205 37.1
C02p13760 Brassica napus HOM05D003759 ORTHO05D004149 1.2e-16 90.9 205 37.1
BolC2t07494H Brassica oleracea HOM05D003759 ORTHO05D004149 1.2e-16 90.9 205 37.1
BcaB05g22385 Brassica carinata HOM05D003759 ORTHO05D004149 2.8e-16 89.7 215 35.3
Haze_19170 Corylus avellana HOM05D003759 ORTHO05D004149 2.8e-16 89.7 240 31.7
TWI34G0689 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 2.8e-16 89.7 243 33.7
A02p08110 Brassica napus HOM05D003759 ORTHO05D004149 3.6e-16 89.4 203 37.9
BraA02t05884Z Brassica rapa HOM05D003759 ORTHO05D004149 3.6e-16 89.4 203 37.9
BolC3t13911H Brassica oleracea HOM05D003759 ORTHO05D004149 4.7e-16 89.0 213 35.2
Cfa020811 Carpinus fangiana HOM05D003759 ORTHO05D004149 6.1e-16 88.6 240 30.8
CiPaw.16G108400 Carya illinoinensis HOM05D003759 ORTHO05D004149 6.1e-16 88.6 234 31.6
ClCG06G012480 Citrullus lanatus HOM05D003759 ORTHO05D004149 8.0e-16 88.2 247 32.4
Dinv43255 Davidia involucrata HOM05D003759 ORTHO05D004149 1.0e-15 87.8 244 32.4
Glyma.02G204900 Glycine max HOM05D003759 ORTHO05D004149 1.4e-15 87.4 242 33.1
QL02p093514 Quercus lobata HOM05D003759 ORTHO05D004149 1.4e-15 87.4 239 31.4
Sabra18G0089900 Salix brachista HOM05D003759 ORTHO05D004149 1.4e-15 87.4 235 31.9
Solyc12g009970.2 Solanum lycopersicum HOM05D003759 ORTHO05D004149 1.8e-15 87.0 283 30.4
C03p14700 Brassica napus HOM05D003759 ORTHO05D004149 2.3e-15 86.7 213 34.7
CARHR271690 Cardamine hirsuta HOM05D003759 ORTHO05D004149 3.0e-15 86.3 206 34.5
Migut.J01364 Erythranthe guttata HOM05D003759 ORTHO05D004149 4.0e-15 85.9 270 32.6
MBI15_g18234_MAGBIO Magnolia biondii HOM05D003759 ORTHO05D004149 4.0e-15 85.9 191 33.5
Gohir.D08G273700 Gossypium hirsutum HOM05D003759 ORTHO05D004149 6.8e-15 85.1 239 31.8
VMungo1309G0866 Vigna mungo HOM05D003759 ORTHO05D004149 6.8e-15 85.1 234 34.6
HanXRQChr12g0357671 Helianthus annuus HOM05D003759 ORTHO05D004149 8.8e-15 84.7 242 32.2
SGA_v2.0_scaffold45G17024 Striga asiatica HOM05D003759 ORTHO05D004149 8.8e-15 84.7 257 30.4
Sopen12g004840 Solanum pennellii HOM05D003759 ORTHO05D004149 1.2e-14 84.3 283 29.7
Gohir.A08G252100 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.5e-14 84.0 203 32.5
Ca_21134_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 2.0e-14 83.6 239 31.0
Ca_21136_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 2.0e-14 83.6 239 31.0
Thecc.09G028600 Theobroma cacao HOM05D003759 ORTHO05D004149 2.0e-14 83.6 242 31.0
Rhsim03G0257600 Rhododendron simsii HOM05D003759 ORTHO05D004149 2.6e-14 83.2 297 29.6
HanXRQChr09g0244591 Helianthus annuus HOM05D003759 ORTHO05D004149 3.4e-14 82.8 238 34.0
Peaxi162Scf00062g00131 Petunia axillaris HOM05D003759 ORTHO05D004149 3.4e-14 82.8 281 30.2
vmacro06067 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 3.4e-14 82.8 294 29.6
TAR625G0365 Trochodendron aralioides HOM05D003759 ORTHO05D004149 4.4e-14 82.4 209 32.1
Gorai.004G292200 Gossypium raimondii HOM05D003759 ORTHO05D004149 7.5e-14 81.6 239 31.4
Phvul.009G204700 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 1.7e-13 80.5 235 32.3
CiPaw.15G166900 Carya illinoinensis HOM05D003759 ORTHO05D004149 2.2e-13 80.1 240 32.1
CAN.G551.47 Capsicum annuum HOM05D003759 ORTHO05D004149 2.8e-13 79.7 261 31.4
Duzib150G1598 Durio zibethinus HOM05D003759 ORTHO05D004149 2.8e-13 79.7 241 30.7
Lsat_1_v5_gn_7_50020 Lactuca sativa HOM05D003759 ORTHO05D004149 3.7e-13 79.3 232 32.8
Potri.018G105300 Populus trichocarpa HOM05D003759 ORTHO05D004149 3.7e-13 79.3 105 47.6
MD15G1151500 Malus domestica HOM05D003759 ORTHO05D004149 4.9e-13 79.0 241 30.7
Lalb_Chr08g0234281 Lupinus albus HOM05D003759 ORTHO05D004149 6.3e-13 78.6 237 30.0
SGA_v2.0_scaffold265G46100 Striga asiatica HOM05D003759 ORTHO05D004149 8.3e-13 78.2 278 28.8
TWI32G1309 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 8.3e-13 78.2 238 31.5
Ciclev10009224m.g Citrus clementina HOM05D003759 ORTHO05D004149 1.1e-12 77.8 238 29.0
HPP92_018342 Vanilla planifolia HOM05D003759 ORTHO05D004149 1.1e-12 77.8 201 34.8
Atru.chr7.24 Acer truncatum HOM05D003759 ORTHO05D004149 1.8e-12 77.0 243 30.5
COL.COLO4_18822 Corchorus olitorius HOM05D003759 ORTHO05D004149 2.4e-12 76.6 241 29.5
Gohir.D07G031400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 2.4e-12 76.6 242 31.0
Gorai.001G032800 Gossypium raimondii HOM05D003759 ORTHO05D004149 2.4e-12 76.6 242 31.0
Aqoxy7G03381 Aquilegia oxysepala HOM05D003759 ORTHO05D004149 3.1e-12 76.3 196 32.1
Aa31LG3G13740 Aethionema arabicum HOM05D003759 ORTHO05D004149 4.1e-12 75.9 198 33.3
BcaB01g04466 Brassica carinata HOM05D003759 ORTHO05D004149 4.1e-12 75.9 201 34.8
TWI63G0632 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 4.1e-12 75.9 266 29.3
arahy.Tifrunner.gnm1.ann1.5MW7KS Arachis hypogaea HOM05D003759 ORTHO05D004149 5.4e-12 75.5 250 30.8
PGSC0003DMG400007832 Solanum tuberosum HOM05D003759 ORTHO05D004149 5.4e-12 75.5 281 29.9
ClCG02G014430 Citrullus lanatus HOM05D003759 ORTHO05D004149 7.0e-12 75.1 238 31.5
Cc06_g14820 Coffea canephora HOM05D003759 ORTHO05D004149 7.0e-12 75.1 288 27.4
Sp6g19580 Schrenkiella parvula HOM05D003759 ORTHO05D004149 7.0e-12 75.1 181 35.9
arahy.Tifrunner.gnm1.ann1.WN4J7U Arachis hypogaea HOM05D003759 ORTHO05D004149 1.2e-11 74.3 249 30.9
BraA03t10564Z Brassica rapa HOM05D003759 ORTHO05D004149 1.2e-11 74.3 213 34.7
Eucgr.C00252 Eucalyptus grandis HOM05D003759 ORTHO05D004149 1.2e-11 74.3 276 27.9
Lj6g0003054 Lotus japonicus HOM05D003759 ORTHO05D004149 1.2e-11 74.3 247 30.8
MSTRG.6151 Avicennia marina HOM05D003759 ORTHO05D004149 1.6e-11 73.9 281 28.8
Lalb_Chr12g0198751 Lupinus albus HOM05D003759 ORTHO05D004149 1.6e-11 73.9 237 30.4
SalBow1G3284 Salvia bowleyana HOM05D003759 ORTHO05D004149 2.7e-11 73.2 278 29.9
Gorai.009G056200 Gossypium raimondii HOM05D003759 ORTHO05D004149 3.5e-11 72.8 242 29.3
Actinidia24379 Actinidia chinensis HOM05D003759 ORTHO05D004149 4.5e-11 72.4 157 35.7
PSO339G1361 Papaver somniferum HOM05D003759 ORTHO05D004149 4.5e-11 72.4 204 33.8
Sed0003883 Sechium edule HOM05D003759 ORTHO05D004149 4.5e-11 72.4 145 35.2
Prupe.7G264400 Prunus persica HOM05D003759 ORTHO05D004149 5.9e-11 72.0 241 28.2
Gohir.D05G054500 Gossypium hirsutum HOM05D003759 ORTHO05D004149 7.8e-11 71.6 242 29.3
SalBow1G6739 Salvia bowleyana HOM05D003759 ORTHO05D004149 7.8e-11 71.6 283 26.1
DCAR_014806 Daucus carota HOM05D003759 ORTHO05D004149 1.3e-10 70.9 276 28.3
Gohir.A07G027400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.3e-10 70.9 242 28.9
Gohir.A05G052900 Gossypium hirsutum HOM05D003759 ORTHO05D004149 2.9e-10 69.7 240 30.8
unitig_748.g7198 Utricularia gibba HOM05D003759 ORTHO05D004149 2.9e-10 69.7 231 29.9
MD02G1006500 Malus domestica HOM05D003759 ORTHO05D004149 5.0e-10 68.9 252 29.8
FAN23G1979 Fragaria x ananassa HOM05D003759 ORTHO05D004149 6.6e-10 68.6 242 30.2
CSS0036931 Camellia sinensis var. sinensis HOM05D003759 ORTHO05D004149 8.6e-10 68.2 280 26.4
PGSC0003DMG400011142 Solanum tuberosum HOM05D003759 ORTHO05D004149 8.6e-10 68.2 298 30.2
Oeu021304.1 Olea europaea HOM05D003759 ORTHO05D004149 1.1e-09 67.8 263 28.1
Lsat_1_v5_gn_5_90100 Lactuca sativa HOM05D003759 ORTHO05D004149 1.5e-09 67.4 201 31.8
Oeu028997.1 Olea europaea HOM05D003759 ORTHO05D004149 1.5e-09 67.4 203 31.5
CAN.G160.50 Capsicum annuum HOM05D003759 ORTHO05D004149 3.3e-09 66.2 275 28.4
Nitab4.5_0002891g0100 Nicotiana tabacum HOM05D003759 ORTHO05D004149 4.3e-09 65.9 280 28.6
PSO384G1085 Papaver somniferum HOM05D003759 ORTHO05D004149 4.3e-09 65.9 191 31.9
AL8G33980 Arabidopsis lyrata HOM05D003759 ORTHO05D004149 7.3e-09 65.1 192 32.8
FAN28G1366 Fragaria x ananassa HOM05D003759 ORTHO05D004149 7.3e-09 65.1 242 29.3
Nitab4.5_0001571g0070 Nicotiana tabacum HOM05D003759 ORTHO05D004149 7.3e-09 65.1 274 27.7
Nitab4.5_0005869g0060 Nicotiana tabacum HOM05D003759 ORTHO05D004149 7.3e-09 65.1 275 28.7
RcHm_v2.0_Chr2g0085521 Rosa chinensis HOM05D003759 ORTHO05D004149 1.6e-08 63.9 241 28.2
Hma1.2p1_0222F.1_g093656 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 2.8e-08 63.2 92 42.4
Hma1.2p1_2680F.1_g326800 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 2.8e-08 63.2 92 42.4
Sed0022175 Sechium edule HOM05D003759 ORTHO05D004149 2.8e-08 63.2 131 35.1
unitig_0.g2686 Utricularia gibba HOM05D003759 ORTHO05D004149 4.7e-08 62.4 250 27.2
Actinidia01426 Actinidia chinensis HOM05D003759 ORTHO05D004149 6.1e-08 62.0 63 52.4
HanXRQChr03g0065561 Helianthus annuus HOM05D003759 ORTHO05D004149 6.1e-08 62.0 243 28.8
Sopen07g001800 Solanum pennellii HOM05D003759 ORTHO05D004149 6.1e-08 62.0 298 27.5
Dinv42845 Davidia involucrata HOM05D003759 ORTHO05D004149 8.0e-08 61.6 106 39.6
FvH4_1g00810 Fragaria vesca HOM05D003759 ORTHO05D004149 8.0e-08 61.6 249 28.9
MELO3C004129.2 Cucumis melo HOM05D003759 ORTHO05D004149 1.0e-07 61.2 257 28.0
Dinv41366 Davidia involucrata HOM05D003759 ORTHO05D004149 1.0e-07 61.2 58 53.4
Potri.006G183000 Populus trichocarpa HOM05D003759 ORTHO05D004149 1.0e-07 61.2 208 31.2
Prupe.1G394700 Prunus persica HOM05D008192 ORTHO05D010301 1.0e-07 61.2 204 31.4
HPP92_010344 Vanilla planifolia HOM05D045913 ORTHO05D004149 1.8e-07 60.5 211 28.9
Actinidia38668 Actinidia chinensis HOM05D003759 ORTHO05D004149 8.9e-07 58.2 53 56.6
GSVIVG01035976001 Vitis vinifera HOM05D008192 ORTHO05D010301 8.9e-07 58.2 65 53.8
Oeu026461.3 Olea europaea HOM05D003759 ORTHO05D004149 2.0e-06 57.0 288 25.0
Os08g0270800 Oryza sativa ssp. japonica HOM05D037779 ORTHO05D004149 2.6e-06 56.6 207 32.4
DCAR_021655 Daucus carota HOM05D002201 ORTHO05D007560 4.4e-06 55.8 100 38.0
Hma1.2p1_0222F.1_g093653 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 4.4e-06 55.8 56 51.8
Hma1.2p1_2680F.1_g326810 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 4.4e-06 55.8 56 51.8
AUR62024800 Chenopodium quinoa HOM05D008192 ORTHO05D010301 7.5e-06 55.1 196 32.1
Zm00001eb412280 Zea mays HOM05D037779 ORTHO05D004149 7.5e-06 55.1 199 25.6
AUR62032421 Chenopodium quinoa HOM05D008192 ORTHO05D010301 9.8e-06 54.7 196 32.1
Duzib168G0610 Durio zibethinus HOM05D008192 ORTHO05D010301 9.8e-06 54.7 199 30.7


User provided reference genes

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