Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 7.3e-46 186.8 91 100.0
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 4.0e-44 181.0 91 95.6
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 4.0e-44 181.0 91 95.6
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 4.0e-44 181.0 91 95.6
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 4.0e-44 181.0 91 95.6
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 4.9e-42 174.1 91 90.1
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 8.4e-42 173.3 91 91.2
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 4.2e-41 171.0 91 90.1
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 4.2e-41 171.0 91 90.1
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 4.2e-41 171.0 91 90.1
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 4.2e-41 171.0 91 90.1
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 4.2e-41 171.0 91 90.1
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 6.0e-40 167.2 91 86.8
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 7.9e-40 166.8 91 89.0
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 3.0e-39 164.9 91 86.8
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 7.4e-38 160.2 91 83.5
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 9.6e-38 159.8 88 85.2
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 9.6e-38 159.8 91 83.5
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 3.1e-36 154.8 91 80.2
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 3.1e-36 154.8 91 80.2
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 6.9e-36 153.7 91 79.1
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.2e-34 148.7 91 74.7
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 2.9e-34 148.3 91 76.9
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 8.4e-34 146.7 91 75.8
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 3.2e-33 144.8 91 74.7
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 5.5e-33 144.1 91 74.7
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 1.2e-32 142.9 91 73.6
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 1.6e-32 142.5 91 73.6
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 1.6e-32 142.5 91 72.5
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 2.1e-32 142.1 91 70.3
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 2.1e-32 142.1 91 73.6
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 3.5e-32 141.4 91 70.3
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 7.9e-32 140.2 91 70.3
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 7.9e-32 140.2 91 71.4
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 1.0e-31 139.8 91 71.4
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 1.3e-31 139.4 91 70.3
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 3.0e-31 138.3 91 70.3
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 6.7e-31 137.1 91 70.3
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 8.7e-31 136.7 91 69.2
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.1e-30 136.3 91 68.1
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 1.5e-30 136.0 88 71.6
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.5e-30 135.2 91 67.0
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 3.3e-30 134.8 88 72.7
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 4.3e-30 134.4 93 69.9
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 5.6e-30 134.0 88 69.3
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 7.4e-30 133.7 88 72.7
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 9.6e-30 133.3 88 69.3
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 9.6e-30 133.3 91 68.1
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 9.6e-30 133.3 90 67.8
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 9.6e-30 133.3 88 70.5
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.3e-29 132.9 91 67.0
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 1.3e-29 132.9 91 67.0
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 1.3e-29 132.9 90 67.8
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 1.3e-29 132.9 91 65.9
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.6e-29 132.5 91 65.9
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 2.1e-29 132.1 87 70.1
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 2.1e-29 132.1 87 70.1
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 2.1e-29 132.1 91 67.0
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 2.1e-29 132.1 75 85.3
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 2.1e-29 132.1 88 68.2
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 2.8e-29 131.7 90 70.0
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 3.7e-29 131.3 91 65.9
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 4.8e-29 131.0 91 64.8
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 6.2e-29 130.6 91 64.8
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 1.1e-28 129.8 93 66.7
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 1.1e-28 129.8 89 67.4
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 4.0e-28 127.9 87 64.4
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 4.0e-28 127.9 88 65.9
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 5.3e-28 127.5 89 62.9
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 5.3e-28 127.5 88 64.8
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 9.0e-28 126.7 85 71.8
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 1.2e-27 126.3 88 65.9
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 1.2e-27 126.3 91 68.1
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 1.2e-27 126.3 91 68.1
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 1.5e-27 125.9 91 67.0
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 1.5e-27 125.9 88 64.8
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 2.6e-27 125.2 91 61.5
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 4.5e-27 124.4 87 63.2
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 5.8e-27 124.0 87 64.4
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 7.6e-27 123.6 87 62.1
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 1.0e-26 123.2 91 65.9
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 1.0e-26 123.2 87 66.7
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 1.0e-26 123.2 90 63.3
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 1.0e-26 123.2 90 63.3
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 1.0e-26 123.2 89 64.0
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.9e-26 121.7 91 63.7
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 3.8e-26 121.3 91 62.6
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 4.9e-26 120.9 92 66.3
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 4.9e-26 120.9 90 62.2
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.4e-25 119.4 92 63.0
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 1.4e-25 119.4 87 60.9
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 3.2e-25 118.2 90 62.2
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 3.2e-25 118.2 87 62.1
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 4.2e-25 117.9 91 63.7
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 4.2e-25 117.9 89 62.9
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 9.3e-25 116.7 91 64.8
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 9.3e-25 116.7 93 60.2
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 1.6e-24 115.9 88 58.0
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 2.1e-24 115.5 88 60.2
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 4.6e-24 114.4 88 62.5
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 4.6e-24 114.4 88 62.5
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.0e-23 113.2 61 82.0
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 1.3e-23 112.8 88 56.8
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 1.8e-23 112.5 87 54.0
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 3.3e-22 108.2 91 59.3
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 4.3e-22 107.8 91 58.2
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 4.3e-22 107.8 91 58.2
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 3.7e-21 104.8 88 60.2
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 3.7e-21 104.8 89 56.2
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 4.8e-21 104.4 88 56.8
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 4.8e-21 104.4 89 56.2
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 8.2e-21 103.6 88 56.8
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 8.2e-21 103.6 88 55.7
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 8.2e-21 103.6 88 55.7
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 8.2e-21 103.6 88 55.7
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.4e-20 102.8 88 55.7
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.4e-20 102.8 85 57.6
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.4e-20 102.8 82 57.3
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 1.8e-20 102.4 82 57.3
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 6.9e-20 100.5 88 53.4
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 1.2e-19 99.8 61 70.5
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 2.2e-18 95.5 91 50.5
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.2e-18 95.5 68 60.3
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 1.9e-17 92.4 88 50.0
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 3.6e-16 88.2 58 63.8
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 5.1e-15 84.3 71 60.6
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 5.1e-15 84.3 71 60.6
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 4.8e-13 77.8 58 58.6
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 2.4e-12 75.5 57 57.9
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 4.1e-12 74.7 85 40.0
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 4.5e-11 71.2 90 40.0
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 5.9e-11 70.9 57 57.9
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 3.8e-10 68.2 77 41.6
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 6.5e-10 67.4 75 41.3
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 6.5e-10 67.4 75 41.3
Oeu001819.1 Olea europaea HOM05D004945 ORTHO05D005536 1.2e-08 63.2 77 42.9
Mapoly0011s0061 Marchantia polymorpha HOM05D004945 ORTHO05D005536 3.0e-07 58.5 83 33.7
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 3.9e-07 58.2 80 35.0
Pp3c5_15280 Physcomitrium patens HOM05D004945 ORTHO05D005536 8.8e-07 57.0 78 33.3
C01p09080 Brassica napus HOM05D040186 ORTHO05D033310 2.6e-06 55.5 36 72.2
BolC1t00899H Brassica oleracea HOM05D040186 ORTHO05D033310 2.6e-06 55.5 36 72.2
BraA01t00758Z Brassica rapa HOM05D040186 ORTHO05D033310 3.3e-06 55.1 35 74.3
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 4.4e-06 54.7 64 43.8


User provided reference genes

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