Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 3.3e-197 691.4 327 100.0
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 4.8e-180 634.4 314 96.2
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 6.2e-180 634.0 311 96.8
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 1.4e-168 596.3 327 89.0
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 2.2e-161 572.4 321 88.8
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 2.1e-159 565.8 338 84.9
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 7.2e-136 487.6 356 75.6
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 1.5e-125 453.4 357 70.6
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 1.2e-119 433.7 345 69.9
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 1.2e-119 433.7 345 69.9
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 2.8e-119 432.6 361 67.0
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 2.9e-116 422.5 361 66.8
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 4.9e-116 421.8 369 66.9
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 6.4e-116 421.4 368 65.5
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 3.5e-114 415.6 366 65.3
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 1.5e-109 400.2 413 58.1
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 4.0e-94 349.0 259 71.8
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 1.3e-81 307.4 363 53.4
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 7.1e-67 258.5 370 49.7
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 9.6e-64 248.1 478 40.8
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 1.5e-56 224.2 375 45.3
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 1.4e-54 217.6 378 42.9
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 5.3e-54 215.7 381 44.4
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 1.3e-52 211.1 390 43.6
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 8.5e-52 208.4 383 43.6
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 1.6e-50 204.1 364 44.0
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 3.6e-50 203.0 391 42.2
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 3.6e-50 203.0 343 45.5
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 2.3e-49 200.3 388 41.5
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 6.7e-49 198.7 370 42.2
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.1e-48 198.0 384 42.7
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 2.8e-47 193.4 424 38.0
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 8.2e-47 191.8 382 42.4
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 3.1e-46 189.9 384 41.7
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 4.1e-46 189.5 388 40.7
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 3.4e-45 186.4 376 41.2
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 3.4e-45 186.4 376 41.2
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 5.9e-45 185.7 351 44.4
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 1.0e-44 184.9 397 42.3
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 2.2e-44 183.7 388 41.2
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 2.2e-44 183.7 379 41.2
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 3.8e-44 183.0 387 39.0
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 1.9e-43 180.6 381 39.9
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 5.5e-43 179.1 401 41.1
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 7.2e-43 178.7 367 39.8
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 7.2e-43 178.7 386 41.2
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 1.2e-42 177.9 388 39.7
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 2.1e-42 177.2 404 38.6
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 4.7e-42 176.0 371 41.0
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 6.1e-42 175.6 373 41.0
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 5.1e-41 172.6 378 38.9
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 6.7e-41 172.2 307 45.0
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 1.1e-40 171.4 383 41.0
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 1.1e-40 171.4 405 38.5
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 1.1e-40 171.4 358 42.2
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 2.6e-40 170.2 374 41.7
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 2.6e-40 170.2 409 39.1
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 3.3e-40 169.9 389 39.8
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 4.4e-40 169.5 353 40.5
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 5.7e-40 169.1 328 44.2
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 1.7e-39 167.5 429 37.1
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 2.2e-39 167.2 383 39.7
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 2.2e-39 167.2 378 37.8
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 3.7e-39 166.4 290 43.8
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 6.3e-39 165.6 313 41.9
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 6.3e-39 165.6 372 40.6
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 8.2e-39 165.2 396 37.6
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 5.3e-38 162.5 396 37.6
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 9.1e-38 161.8 323 42.4
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 2.0e-37 160.6 324 41.4
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 2.0e-37 160.6 380 37.9
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 1.0e-36 158.3 317 41.6
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 2.2e-36 157.1 315 41.3
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 3.8e-36 156.4 323 39.9
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 2.5e-35 153.7 367 41.4
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 3.2e-35 153.3 322 41.0
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 5.5e-35 152.5 323 40.9
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 9.4e-35 151.8 326 38.0
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.2e-34 151.4 355 40.3
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 1.2e-34 151.4 435 37.5
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 2.1e-34 150.6 326 39.3
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 6.1e-34 149.1 330 41.2
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 1.4e-33 147.9 323 40.2
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 1.4e-33 147.9 314 41.1
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 1.8e-33 147.5 370 39.5
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 1.8e-33 147.5 382 36.9
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 3.0e-33 146.7 372 36.6
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 4.0e-33 146.4 313 40.3
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 1.1e-32 144.8 367 36.8
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 1.1e-32 144.8 323 38.4
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.0e-32 144.1 317 39.4
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 5.7e-32 142.5 317 39.4
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.8e-31 140.2 308 39.6
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 6.3e-31 139.0 370 38.1
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 1.4e-30 137.9 457 32.4
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 2.6e-29 133.7 325 38.8
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 5.9e-29 132.5 408 35.0
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 8.5e-28 128.6 257 40.9
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 1.1e-27 128.3 313 39.0
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 1.6e-26 124.4 182 46.7
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 3.6e-26 123.2 333 36.0
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 4.7e-26 122.9 301 36.2
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 6.8e-25 119.0 445 29.9
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 6.8e-25 119.0 313 37.7
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 6.8e-25 119.0 354 36.4
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 6.8e-25 119.0 296 36.1
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 8.8e-25 118.6 242 40.1
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 2.0e-24 117.5 333 34.5
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 7.5e-24 115.5 167 47.3
A03p58570 Brassica napus HOM05D005514 ORTHO05D006563 1.3e-23 114.8 120 63.3
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 2.8e-23 113.6 362 35.1
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 6.3e-23 112.5 281 37.4
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 1.0e-20 105.1 211 38.9
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 2.9e-20 103.6 196 42.9
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 5.0e-20 102.8 282 36.5
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 2.5e-19 100.5 222 38.3
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 4.2e-19 99.8 213 37.1
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 5.5e-19 99.4 226 40.7
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 1.2e-18 98.2 276 34.4
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 3.7e-15 86.7 313 32.3
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 6.3e-15 85.9 262 33.6
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 1.1e-14 85.1 306 35.3
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 7.0e-14 82.4 201 33.8
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 1.1e-11 75.1 377 29.4
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 1.2e-10 71.6 169 35.5
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 5.2e-09 66.2 52 63.5
BcaC08g47141 Brassica carinata HOM05D005514 ORTHO05D006563 1.5e-08 64.7 58 65.5
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 1.3e-07 61.6 338 28.1
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 2.9e-07 60.5 48 54.2
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 9.2e-06 55.5 361 29.4


User provided reference genes

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