Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00324 Brassica carinata HOM05D007425 ORTHO05D009334 4.8e-89 331.3 180 100.0
Sp7g13010 Schrenkiella parvula HOM05D007425 ORTHO05D009334 3.1e-72 275.4 181 86.7
BraA01t02180Z Brassica rapa HOM05D007425 ORTHO05D009334 1.5e-71 273.1 180 87.2
C01p28260 Brassica napus HOM05D007425 ORTHO05D009334 7.6e-71 270.8 180 85.6
BcaC09g50166 Brassica carinata HOM05D007425 ORTHO05D009334 2.2e-70 269.2 180 85.0
BolC1t02755H Brassica oleracea HOM05D007425 ORTHO05D009334 2.2e-70 269.2 180 85.0
AL7G40980 Arabidopsis lyrata HOM05D007425 ORTHO05D009334 2.6e-63 245.7 182 79.7
CARHR221470 Cardamine hirsuta HOM05D007425 ORTHO05D009334 7.2e-61 237.7 181 79.6
Aa31LG9G2430 Aethionema arabicum HOM05D007425 ORTHO05D009334 3.1e-56 222.2 182 70.3
Thhalv10026366m.g Eutrema salsugineum HOM05D007425 ORTHO05D009334 2.0e-55 219.5 181 72.9
Carub.0007s2724 Capsella rubella HOM05D007425 ORTHO05D009334 1.0e-54 217.2 182 72.5
AT4G14870 Arabidopsis thaliana HOM05D007425 ORTHO05D009334 3.6e-52 208.8 182 72.0
THA.LOC104822268 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 2.1e-44 183.0 188 64.9
THA.LOC104803027 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 2.7e-44 182.6 186 63.4
Atru.chr4.2458 Acer truncatum HOM05D007425 ORTHO05D009334 9.8e-34 147.5 186 55.4
RcHm_v2.0_Chr7g0190521 Rosa chinensis HOM05D007425 ORTHO05D009334 1.3e-30 137.1 132 62.1
PGR142G3696 Punica granatum HOM05D007425 ORTHO05D009334 2.9e-30 136.0 126 63.5
CANSAT78G0262 Cannabis sativa HOM05D007425 ORTHO05D009334 1.1e-29 134.0 135 62.2
FAN13G1551 Fragaria x ananassa HOM05D007425 ORTHO05D009334 1.6e-28 130.2 132 61.4
Prupe.1G014400 Prunus persica HOM05D007425 ORTHO05D009334 3.6e-28 129.0 134 60.4
Cpa.g.sc9.287 Carica papaya HOM05D007425 ORTHO05D009334 1.0e-27 127.5 181 49.2
Nn4g26476 Nelumbo nucifera HOM05D007425 ORTHO05D009334 1.4e-27 127.1 183 49.7
FAN04G2988 Fragaria x ananassa HOM05D007425 ORTHO05D009334 2.3e-27 126.3 125 60.8
Thecc.04G232500 Theobroma cacao HOM05D007425 ORTHO05D009334 2.3e-27 126.3 185 47.6
QL06p002223 Quercus lobata HOM05D007425 ORTHO05D009334 3.0e-27 125.9 177 48.0
Duzib212G0056 Durio zibethinus HOM05D007425 ORTHO05D009334 4.0e-27 125.6 132 59.1
Gohir.D09G218600 Gossypium hirsutum HOM05D007425 ORTHO05D009334 6.8e-27 124.8 131 60.3
Oeu031224.1 Olea europaea HOM05D007425 ORTHO05D009334 6.8e-27 124.8 120 60.0
Oeu031227.1 Olea europaea HOM05D007425 ORTHO05D009334 6.8e-27 124.8 120 60.0
Oeu031228.1 Olea europaea HOM05D007425 ORTHO05D009334 6.8e-27 124.8 120 60.0
Duzib151G0901 Durio zibethinus HOM05D007425 ORTHO05D009334 8.8e-27 124.4 187 47.6
Gohir.A09G216200 Gossypium hirsutum HOM05D007425 ORTHO05D009334 8.8e-27 124.4 131 60.3
Rhsim04G0201800 Rhododendron simsii HOM05D007425 ORTHO05D009334 8.8e-27 124.4 120 59.2
MD13G1193800 Malus domestica HOM05D007425 ORTHO05D009334 1.2e-26 124.0 123 61.8
COL.COLO4_21483 Corchorus olitorius HOM05D007425 ORTHO05D009334 1.5e-26 123.6 189 48.7
Dinv13997 Davidia involucrata HOM05D001000 ORTHO05D002976 2.0e-26 123.2 120 58.3
MSTRG.24738 Avicennia marina HOM05D007425 ORTHO05D009334 2.6e-26 122.9 119 59.7
CiPaw.01G166700 Carya illinoinensis HOM05D007425 ORTHO05D009334 2.6e-26 122.9 189 48.7
Gorai.006G239600 Gossypium raimondii HOM05D007425 ORTHO05D009334 2.6e-26 122.9 130 59.2
Lj3P734T17 Lonicera japonica HOM05D007425 ORTHO05D009334 3.4e-26 122.5 177 48.6
Ah.14g089400 Amaranthus hybridus HOM05D007425 ORTHO05D009334 4.4e-26 122.1 134 56.0
Potri.008G153400 Populus trichocarpa HOM05D007425 ORTHO05D009334 5.7e-26 121.7 126 60.3
Cfa015652 Carpinus fangiana HOM05D007425 ORTHO05D009334 7.5e-26 121.3 116 63.8
Hma1.2p1_0275F.1_g110893 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 7.5e-26 121.3 117 63.2
Hma1.2p1_0275F.1_g110900 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 7.5e-26 121.3 117 63.2
SGA_v2.0_scaffold39G15229 Striga asiatica HOM05D007425 ORTHO05D009334 7.5e-26 121.3 157 52.2
TAR636G0682 Trochodendron aralioides HOM05D007425 ORTHO05D009334 7.5e-26 121.3 158 53.8
Cc03_g03840 Coffea canephora HOM05D007425 ORTHO05D009334 9.8e-26 120.9 174 52.3
Migut.G00341 Erythranthe guttata HOM05D007425 ORTHO05D009334 1.3e-25 120.6 177 48.0
MELO3C006532.2 Cucumis melo HOM05D007425 ORTHO05D009334 2.2e-25 119.8 142 54.9
FvH4_5g07900 Fragaria vesca HOM05D007425 ORTHO05D009334 2.2e-25 119.8 124 58.9
FAN18G2754 Fragaria x ananassa HOM05D007425 ORTHO05D009334 2.2e-25 119.8 124 58.9
Sed0025719 Sechium edule HOM05D007425 ORTHO05D009334 2.8e-25 119.4 142 56.3
CSS0011351 Camellia sinensis var. sinensis HOM05D007425 ORTHO05D009334 4.9e-25 118.6 111 63.1
PGSC0003DMG400032277 Solanum tuberosum HOM05D007425 ORTHO05D009334 4.9e-25 118.6 101 66.3
Haze_00892 Corylus avellana HOM05D007425 ORTHO05D009334 6.3e-25 118.2 186 48.4
MD16G1194500 Malus domestica HOM05D007425 ORTHO05D009334 6.3e-25 118.2 180 49.4
CsaV3_3G013300 Cucumis sativus L. HOM05D007425 ORTHO05D009334 8.3e-25 117.9 142 54.2
Eucgr.L02493 Eucalyptus grandis HOM05D007425 ORTHO05D009334 1.8e-24 116.7 130 54.6
EL10Ac3g06446 Beta vulgaris HOM05D007425 ORTHO05D009334 2.4e-24 116.3 129 55.0
Eucgr.L01274 Eucalyptus grandis HOM05D007425 ORTHO05D009334 4.1e-24 115.5 130 54.6
SalBow3G4464 Salvia bowleyana HOM05D007425 ORTHO05D009334 4.1e-24 115.5 176 46.6
Manes.03G178200 Manihot esculenta HOM05D007425 ORTHO05D009334 5.4e-24 115.2 179 45.8
Sc13g0004450 Simmondsia chinensis HOM05D007425 ORTHO05D009334 5.4e-24 115.2 170 48.2
HanXRQChr08g0229221 Helianthus annuus HOM05D007425 ORTHO05D009334 7.0e-24 114.8 91 71.4
Nitab4.5_0004258g0010 Nicotiana tabacum HOM05D007425 ORTHO05D009334 7.0e-24 114.8 107 62.6
Sopen09g030940 Solanum pennellii HOM05D007425 ORTHO05D009334 7.0e-24 114.8 182 44.5
Sed0000110 Sechium edule HOM05D007425 ORTHO05D009334 9.2e-24 114.4 141 52.5
DCAR_002385 Daucus carota HOM05D007425 ORTHO05D009334 2.0e-23 113.2 134 53.0
Eucgr.B01085 Eucalyptus grandis HOM05D007425 ORTHO05D009334 2.7e-23 112.8 118 60.2
Sabra08G0117000 Salix brachista HOM05D007425 ORTHO05D009334 2.7e-23 112.8 189 46.0
Lsat_1_v5_gn_9_18440 Lactuca sativa HOM05D007425 ORTHO05D009334 3.5e-23 112.5 91 68.1
AUR62033636 Chenopodium quinoa HOM05D007425 ORTHO05D009334 1.3e-22 110.5 161 47.2
PSO017G2433 Papaver somniferum HOM05D007425 ORTHO05D009334 1.3e-22 110.5 123 56.1
ECA247G1832 Erigeron canadensis HOM05D007425 ORTHO05D009334 2.3e-22 109.8 93 66.7
PSO170G1990 Papaver somniferum HOM05D007425 ORTHO05D009334 5.0e-22 108.6 123 56.1
Zm00001eb375110 Zea mays HOM05D007425 ORTHO05D009334 5.0e-22 108.6 129 52.7
VMungo1215G1239 Vigna mungo HOM05D007425 ORTHO05D009334 8.6e-22 107.8 115 60.9
LjContig00408g0025154 Lotus japonicus HOM05D007425 ORTHO05D009334 1.1e-21 107.5 105 59.0
CAN.G490.15 Capsicum annuum HOM05D007425 ORTHO05D009334 1.5e-21 107.1 72 77.8
Phvul.002G045100 Phaseolus vulgaris HOM05D007425 ORTHO05D009334 3.3e-21 105.9 86 68.6
Ciclev10006055m.g Citrus clementina HOM05D007425 ORTHO05D009334 2.1e-20 103.2 178 43.3
arahy.Tifrunner.gnm1.ann1.CGGZ98 Arachis hypogaea HOM05D007425 ORTHO05D009334 4.7e-20 102.1 156 45.5
Glyma.01G237800 Glycine max HOM05D007425 ORTHO05D009334 4.7e-20 102.1 177 44.1
Aqoxy7G02632 Aquilegia oxysepala HOM05D007425 ORTHO05D009334 6.1e-20 101.7 123 52.8
MBI16_g00841_MAGBIO Magnolia biondii HOM05D007425 ORTHO05D009334 1.8e-19 100.1 114 59.6
Nitab4.5_0000043g0080 Nicotiana tabacum HOM05D007425 ORTHO05D009334 1.8e-19 100.1 99 59.6
TAR636G0596 Trochodendron aralioides HOM05D007425 ORTHO05D009334 2.3e-19 99.8 67 74.6
unitig_32.g10818 Utricularia gibba HOM05D007425 ORTHO05D009334 4.0e-19 99.0 126 51.6
Medtr5g038520 Medicago truncatula HOM05D007425 ORTHO05D009334 6.8e-19 98.2 160 43.1
ATR0626G045 Amborella trichopoda HOM05D007425 ORTHO05D009334 8.9e-19 97.8 68 72.1
HPP92_010419 Vanilla planifolia HOM05D007425 ORTHO05D009334 2.0e-18 96.7 157 49.0
Psat2g124560 Pisum sativum HOM05D007425 ORTHO05D009334 4.4e-18 95.5 161 43.5
Ca_04746_v3 Cicer arietinum L. HOM05D007425 ORTHO05D009334 1.3e-17 94.0 79 64.6
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 2.9e-17 92.8 78 69.2
CDE04G2079 Ceratophyllum demersum HOM05D007425 ORTHO05D009334 8.3e-17 91.3 111 50.5
Lalb_Chr05g0211001 Lupinus albus HOM05D007425 ORTHO05D009334 1.1e-16 90.9 85 57.6
Os04g0306750 Oryza sativa ssp. japonica HOM05D007425 ORTHO05D009334 4.1e-16 89.0 60 75.0
SEGI_06187 Sequoiadendron giganteum HOM05D007425 ORTHO05D009334 3.9e-14 82.4 66 63.6
Pp3c2_27330 Physcomitrium patens HOM05D007425 ORTHO05D009334 2.5e-13 79.7 120 42.5
AUR62034746 Chenopodium quinoa HOM05D007425 ORTHO05D009334 4.4e-10 68.9 99 48.5
Os08g0399050 Oryza sativa ssp. japonica HOM05D007425 ORTHO05D009334 9.8e-10 67.8 66 62.1
Mapoly0070s0085 Marchantia polymorpha HOM05D007425 ORTHO05D009334 1.9e-08 63.5 167 34.7
SMO358G0357 Selaginella moellendorffii HOM05D013303 ORTHO05D015288 4.1e-08 62.4 102 46.1
CBR_g18894 Chara braunii HOM05D007425 ORTHO05D009334 6.6e-06 55.1 111 35.1


User provided reference genes

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