Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00267 Brassica carinata HOM05D006695 ORTHO05D008239 3.3e-124 448.4 221 100.0
A01p22050 Brassica napus HOM05D006695 ORTHO05D008239 6.8e-122 440.7 221 97.7
BraA01t02111Z Brassica rapa HOM05D006695 ORTHO05D008239 6.8e-122 440.7 221 97.7
BolC1t02683H Brassica oleracea HOM05D006695 ORTHO05D008239 5.8e-121 437.6 221 96.8
BcaC09g50242 Brassica carinata HOM05D006695 ORTHO05D008239 1.3e-120 436.4 221 96.8
BcaC09g50247 Brassica carinata HOM05D006695 ORTHO05D008239 1.3e-120 436.4 221 96.8
C01p27440 Brassica napus HOM05D006695 ORTHO05D008239 2.9e-120 435.3 221 96.4
Sp7g13770 Schrenkiella parvula HOM05D006695 ORTHO05D008239 1.2e-118 429.9 221 94.6
AT4G15520 Arabidopsis thaliana HOM05D006695 ORTHO05D008239 6.0e-118 427.6 223 93.3
AL7G40000 Arabidopsis lyrata HOM05D006695 ORTHO05D008239 5.1e-117 424.5 223 93.3
CARHR222310 Cardamine hirsuta HOM05D006695 ORTHO05D008239 1.1e-116 423.3 221 93.2
BcaC06g32939 Brassica carinata HOM05D006695 ORTHO05D008239 1.9e-116 422.5 223 93.3
A03p49160 Brassica napus HOM05D006695 ORTHO05D008239 3.3e-116 421.8 221 92.3
Carub.0007s2636 Capsella rubella HOM05D006695 ORTHO05D008239 2.1e-115 419.1 223 91.0
Thhalv10026193m.g Eutrema salsugineum HOM05D006695 ORTHO05D008239 3.6e-115 418.3 221 91.4
BraA03t14010Z Brassica rapa HOM05D006695 ORTHO05D008239 4.0e-114 414.8 221 91.9
Aa31LG9G1920 Aethionema arabicum HOM05D006695 ORTHO05D008239 6.6e-109 397.5 214 89.7
THA.LOC104821758 Tarenaya hassleriana HOM05D006695 ORTHO05D008239 9.6e-108 393.7 222 87.4
BcaC06g33413 Brassica carinata HOM05D006695 ORTHO05D008239 1.5e-105 386.3 223 86.5
C07p47200 Brassica napus HOM05D006695 ORTHO05D008239 4.8e-99 364.8 195 91.3
PSO832G0924 Papaver somniferum HOM05D006695 ORTHO05D008239 9.0e-98 360.5 215 77.2
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 2.0e-97 359.4 218 78.4
Manes.03G188400 Manihot esculenta HOM05D006695 ORTHO05D008239 5.8e-97 357.8 213 82.2
PSO210G1829 Papaver somniferum HOM05D006695 ORTHO05D008239 1.0e-96 357.1 215 76.3
BolC7t45242H Brassica oleracea HOM05D006695 ORTHO05D008239 2.2e-96 355.9 225 80.9
Hma1.2p1_0643F.1_g194500 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 4.9e-96 354.8 214 80.4
Actinidia23450 Actinidia chinensis HOM05D006695 ORTHO05D008239 1.9e-95 352.8 215 78.1
TWI09G1388 Tripterygium wilfordii HOM05D006695 ORTHO05D008239 2.5e-95 352.4 213 80.3
Sc25g0004560 Simmondsia chinensis HOM05D006695 ORTHO05D008239 3.2e-95 352.1 216 78.2
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 7.1e-95 350.9 213 80.3
CANSAT78G2164 Cannabis sativa HOM05D006695 ORTHO05D008239 2.1e-94 349.4 213 79.3
TAR362G0795 Trochodendron aralioides HOM05D006695 ORTHO05D008239 3.5e-94 348.6 213 77.9
CsaV3_3G013940 Cucumis sativus L. HOM05D006695 ORTHO05D008239 4.6e-94 348.2 220 76.8
Cc03_g02720 Coffea canephora HOM05D006695 ORTHO05D008239 6.0e-94 347.8 214 76.6
Sed0007686 Sechium edule HOM05D006695 ORTHO05D008239 6.0e-94 347.8 220 76.4
Cpa.g.sc16.75 Carica papaya HOM05D006695 ORTHO05D008239 7.9e-94 347.4 217 77.4
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 1.8e-93 346.3 219 75.8
QL06p006240 Quercus lobata HOM05D006695 ORTHO05D008239 1.8e-93 346.3 213 77.9
CiPaw.01G156500 Carya illinoinensis HOM05D006695 ORTHO05D008239 2.3e-93 345.9 213 77.0
Psat4g028960 Pisum sativum HOM05D006695 ORTHO05D008239 2.3e-93 345.9 220 75.0
GSVIVG01017849001 Vitis vinifera HOM05D006695 ORTHO05D008239 3.0e-93 345.5 213 76.5
CSS0029139 Camellia sinensis var. sinensis HOM05D002837 ORTHO05D008239 3.9e-93 345.1 215 76.7
FvH4_4g16710 Fragaria vesca HOM05D006695 ORTHO05D008239 3.9e-93 345.1 213 78.4
PGR004G1570 Punica granatum HOM05D006695 ORTHO05D008239 3.9e-93 345.1 217 77.0
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 5.1e-93 344.7 213 78.4
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 5.1e-93 344.7 218 76.1
Thecc.04G272900 Theobroma cacao HOM05D006695 ORTHO05D008239 6.7e-93 344.4 217 76.0
DCAR_022857 Daucus carota HOM05D006695 ORTHO05D008239 8.7e-93 344.0 217 76.5
Potri.008G198200 Populus trichocarpa HOM05D006695 ORTHO05D008239 8.7e-93 344.0 217 78.3
CAN.G889.4 Capsicum annuum HOM05D006695 ORTHO05D008239 1.1e-92 343.6 213 76.1
TPR.G28124 Trifolium pratense HOM05D006695 ORTHO05D008239 1.9e-92 342.8 215 75.8
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 2.5e-92 342.4 214 76.6
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 4.3e-92 341.7 218 74.8
Medtr4g118420 Medicago truncatula HOM05D006695 ORTHO05D008239 5.7e-92 341.3 216 73.6
Gorai.011G181900 Gossypium raimondii HOM05D006695 ORTHO05D008239 7.4e-92 340.9 217 76.0
RcHm_v2.0_Chr4g0420161 Rosa chinensis HOM05D006695 ORTHO05D008239 7.4e-92 340.9 213 77.5
Atru.chr4.2706 Acer truncatum HOM05D006695 ORTHO05D008239 9.6e-92 340.5 217 77.0
Eucgr.H03643 Eucalyptus grandis HOM05D006695 ORTHO05D008239 9.6e-92 340.5 216 76.4
Peaxi162Scf00095g00413 Petunia axillaris HOM05D006695 ORTHO05D008239 1.3e-91 340.1 213 75.1
MELO3C006586.2 Cucumis melo HOM05D006695 ORTHO05D008239 1.6e-91 339.7 235 71.5
Gohir.D10G163000 Gossypium hirsutum HOM05D006695 ORTHO05D008239 2.1e-91 339.3 217 76.0
Cfa015538 Carpinus fangiana HOM05D006695 ORTHO05D008239 3.7e-91 338.6 221 74.2
Gohir.A10G105600 Gossypium hirsutum HOM05D006695 ORTHO05D008239 3.7e-91 338.6 217 75.6
FAN22G2065 Fragaria x ananassa HOM05D006695 ORTHO05D008239 8.2e-91 337.4 211 76.8
Haze_01012 Corylus avellana HOM05D006695 ORTHO05D008239 1.1e-90 337.0 221 75.1
Sopen01g032270 Solanum pennellii HOM05D006695 ORTHO05D008239 1.1e-90 337.0 213 74.2
PGSC0003DMG400032106 Solanum tuberosum HOM05D006695 ORTHO05D008239 1.1e-90 337.0 213 74.2
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 1.8e-90 336.3 218 73.9
Ciclev10006973m.g Citrus clementina HOM05D006695 ORTHO05D008239 2.4e-90 335.9 217 75.6
FAN07G1129 Fragaria x ananassa HOM05D006695 ORTHO05D008239 2.4e-90 335.9 213 76.5
FAN17G3101 Fragaria x ananassa HOM05D006695 ORTHO05D008239 4.1e-90 335.1 213 76.1
Duzib151G0948 Durio zibethinus HOM05D006695 ORTHO05D008239 6.9e-90 334.3 217 73.7
Solyc01g080470.3 Solanum lycopersicum HOM05D006695 ORTHO05D008239 1.2e-89 333.6 213 73.7
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 1.5e-89 333.2 214 75.7
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 2.6e-89 332.4 214 74.3
Lj3A806T51 Lonicera japonica HOM05D006695 ORTHO05D008239 2.6e-89 332.4 214 75.7
EL10Ac3g06533 Beta vulgaris HOM05D006695 ORTHO05D008239 3.4e-89 332.0 213 74.6
Nitab4.5_0000059g0220 Nicotiana tabacum HOM05D006695 ORTHO05D008239 3.4e-89 332.0 214 75.7
Aqoxy5G00568 Aquilegia oxysepala HOM05D006695 ORTHO05D008239 4.5e-89 331.6 213 75.1
ECA233G4227 Erigeron canadensis HOM05D006695 ORTHO05D008239 5.9e-89 331.3 217 75.1
Lsat_1_v5_gn_6_64520 Lactuca sativa HOM05D006695 ORTHO05D008239 5.9e-89 331.3 216 75.5
SalBow5G4654 Salvia bowleyana HOM05D006695 ORTHO05D008239 5.9e-89 331.3 214 76.6
SalBow5G4989 Salvia bowleyana HOM05D006695 ORTHO05D008239 5.9e-89 331.3 214 76.6
AUR62040724 Chenopodium quinoa HOM05D006695 ORTHO05D008239 1.1e-87 327.0 209 74.2
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 2.5e-87 325.9 214 73.4
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 2.5e-87 325.9 217 76.0
ClCG05G005600 Citrullus lanatus HOM05D006695 ORTHO05D008239 2.7e-86 322.4 205 75.1
CDE02G2295 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 6.1e-86 321.2 198 75.8
Sed0005422 Sechium edule HOM05D006695 ORTHO05D008239 1.8e-85 319.7 206 75.7
HanXRQChr08g0235981 Helianthus annuus HOM05D006695 ORTHO05D008239 1.4e-82 310.1 216 69.0
unitig_8.g3083 Utricularia gibba HOM05D006695 ORTHO05D008239 1.4e-82 310.1 217 71.0
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 2.4e-82 309.3 205 71.7
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 9.0e-82 307.4 204 69.6
Nitab4.5_0006860g0010 Nicotiana tabacum HOM05D006695 ORTHO05D008239 1.0e-77 293.9 215 68.8
Os05g0141400 Oryza sativa ssp. japonica HOM05D006695 ORTHO05D008239 1.0e-77 293.9 217 66.8
Zm00001eb108650 Zea mays HOM05D006695 ORTHO05D008239 5.1e-77 291.6 214 68.2
CDE08G0351 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 6.7e-77 291.2 216 67.1
SHI00328 Sapria himalayana HOM05D006695 ORTHO05D008239 3.3e-76 288.9 213 69.5
ATR0580G301 Amborella trichopoda HOM05D006695 ORTHO05D008239 7.4e-76 287.7 205 70.7
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 6.3e-75 284.6 183 72.7
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 3.8e-72 275.4 223 60.1
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 3.8e-72 275.4 199 68.3
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 5.2e-69 265.0 191 67.0
FAN12G3773 Fragaria x ananassa HOM05D006695 ORTHO05D008239 4.1e-66 255.4 259 55.2
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 2.9e-64 249.2 142 83.8
Dinv38348 Davidia involucrata HOM05D006695 ORTHO05D008239 1.5e-63 246.9 149 75.8
Hma1.2p1_0643F.1_g194510 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 1.9e-63 246.5 154 74.7
vmacro08234 Vaccinium macrocarpon HOM05D006695 ORTHO05D008239 8.8e-61 237.7 147 75.5
MD16G1178900 Malus domestica HOM05D006695 ORTHO05D008239 3.1e-58 229.2 145 74.5
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 1.0e-56 224.2 172 59.9
MCO16G273 Micromonas commoda HOM05D006695 ORTHO05D008239 3.5e-49 199.1 190 48.9
FAN12G1880 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.3e-40 170.6 101 81.2
PRCOL_00001113 Prasinoderma coloniale HOM05D006695 ORTHO05D008239 4.7e-38 162.2 208 45.7
SEGI_22589 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 4.7e-30 135.6 95 67.4
CBR_g29507 Chara braunii HOM05D006695 ORTHO05D008239 1.0e-24 117.9 87 63.2
arahy.Tifrunner.gnm1.ann1.5C91KI Arachis hypogaea HOM05D006695 ORTHO05D008239 5.0e-24 115.5 66 80.3
ATR0235G001 Amborella trichopoda HOM05D006695 ORTHO05D008239 2.8e-22 109.8 66 77.3
CBR_g29509 Chara braunii HOM05D006695 ORTHO05D008239 3.6e-22 109.4 98 54.1
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 3.6e-22 109.4 86 61.6
MD13G1177100 Malus domestica HOM05D006695 ORTHO05D008239 6.0e-17 92.0 64 65.6
Oeu037660.1 Olea europaea HOM05D006695 ORTHO05D008239 1.7e-11 73.9 143 35.0
arahy.Tifrunner.gnm1.ann1.A7EL5Y Arachis hypogaea HOM05D003181 ORTHO05D003689 6.6e-08 62.0 41 65.9
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 1.2e-06 57.8 143 32.2
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 2.8e-06 56.6 153 29.4
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 6.2e-06 55.5 153 28.8
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 8.1e-06 55.1 153 28.1
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 8.1e-06 55.1 153 28.1


User provided reference genes

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