Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1885.5 957 100.0
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1851.6 957 98.2
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1851.6 957 98.2
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1851.3 954 98.3
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1842.0 961 97.6
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1791.2 954 94.3
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1790.4 954 94.2
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1779.6 954 93.9
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1778.5 954 93.9
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1772.7 954 93.9
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1770.4 957 92.6
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1759.2 954 92.1
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1759.2 942 93.8
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1737.6 956 92.1
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1736.5 955 91.7
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1710.7 874 99.1
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1670.6 955 88.5
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1623.2 855 95.0
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1596.6 970 82.8
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1524.6 963 79.8
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1523.8 972 78.3
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1521.1 964 78.7
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1517.3 888 83.9
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1516.9 963 79.4
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1516.1 899 83.5
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1514.6 973 79.3
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1513.8 970 78.7
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1508.8 891 83.3
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1506.1 889 83.6
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1504.6 889 83.6
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1504.6 964 78.9
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1504.6 889 83.6
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1503.8 891 83.2
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1502.6 960 78.2
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1502.3 947 79.5
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1500.3 963 77.9
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1499.2 965 79.0
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1499.2 973 77.3
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1499.2 889 83.6
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1496.5 889 83.4
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1496.1 894 82.4
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1494.6 901 82.5
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1493.8 891 82.7
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1490.7 895 82.2
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1489.6 891 82.6
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1489.6 915 81.3
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1486.9 908 81.1
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1484.2 963 77.6
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1483.0 971 76.6
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1480.7 891 82.7
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1480.7 892 82.0
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1479.5 992 75.2
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1479.2 966 77.8
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1478.4 883 83.5
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1478.0 899 80.9
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1477.6 892 81.5
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1475.7 874 82.8
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1474.1 890 81.8
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1474.1 899 81.1
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1473.8 939 77.7
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1472.6 923 80.0
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1471.4 965 76.8
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1469.9 909 80.0
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1469.9 909 80.0
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1468.8 874 82.6
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1468.8 890 81.1
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1468.4 940 78.4
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1468.0 872 83.0
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1466.1 890 81.1
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1465.7 909 79.9
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1464.1 873 82.6
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1461.8 895 80.9
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1461.4 892 81.1
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1458.4 974 75.8
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1454.9 952 76.3
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1450.3 873 81.7
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1450.3 873 81.9
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1449.5 889 80.1
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1449.1 892 79.8
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1448.7 872 81.9
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1448.3 877 81.2
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1448.0 892 79.8
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1447.2 873 82.1
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1446.4 892 79.9
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1442.2 878 80.9
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1441.0 873 81.0
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1439.1 892 80.6
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1438.7 876 80.5
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1436.8 946 76.8
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1434.9 845 83.7
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1432.5 898 78.8
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1431.0 857 82.6
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1426.4 874 80.4
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1426.0 895 79.3
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1425.6 858 81.8
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1423.7 843 83.0
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1422.5 857 81.0
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1420.2 780 93.2
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1418.7 931 76.6
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1418.3 872 80.2
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1413.3 843 82.3
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1409.8 893 78.5
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1407.9 915 77.2
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1407.1 948 75.2
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1406.0 880 80.3
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1404.8 857 81.1
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1401.7 853 81.0
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1390.6 933 74.5
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1385.2 884 76.9
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1384.8 904 76.4
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1379.4 872 77.4
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1372.5 891 77.4
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1365.9 865 77.3
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1364.0 878 78.7
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1362.4 1086 66.0
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1353.6 870 76.0
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1349.7 931 74.9
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1344.3 882 77.0
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1338.6 869 76.9
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1335.9 823 79.2
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1318.5 771 83.8
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1314.7 803 80.1
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1302.3 903 73.5
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1297.0 814 80.3
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1292.3 904 72.3
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1267.3 882 75.2
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1233.4 880 73.3
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1221.8 878 72.0
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1219.5 734 82.0
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1193.3 857 68.8
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1191.8 729 80.5
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1167.1 874 67.8
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1164.4 898 65.0
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 1.1e-309 1066.6 629 82.7
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 1.4e-304 1049.7 883 60.1
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 1.8e-283 979.5 580 82.4
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 1.6e-263 913.3 565 79.1
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 5.2e-259 898.3 910 54.4
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.1e-216 755.0 492 78.3
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.5e-213 746.5 446 83.9
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.5e-202 710.7 504 72.8
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 1.1e-187 661.4 417 80.1
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.6e-183 647.5 449 73.5
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 1.8e-182 644.0 743 49.1
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 8.2e-180 635.2 335 95.2
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 1.7e-156 557.8 470 62.8
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 1.8e-134 484.6 295 80.0
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 4.0e-126 456.8 390 61.3
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.9e-104 384.8 421 51.3
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 1.5e-96 358.6 318 61.3
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 3.3e-88 330.9 216 76.4
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 2.4e-78 298.1 258 60.9
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 1.8e-62 245.4 227 59.9
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 8.0e-58 229.9 216 56.9
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 9.7e-56 223.0 151 71.5
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 4.5e-45 187.6 119 74.8
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 2.8e-39 168.3 85 97.6
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 1.8e-38 165.6 268 39.9
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.7e-36 159.1 118 68.6
BcaC09g50249 Brassica carinata HOM05D003956 ORTHO05D004850 9.8e-32 143.3 81 88.9
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 2.7e-29 135.2 81 79.0
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 7.8e-29 133.7 83 75.9
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 6.1e-26 124.0 91 65.9
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 1.1e-22 113.2 439 26.9
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 7.0e-22 110.5 130 50.8
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 2.3e-20 105.5 95 60.0
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 1.6e-18 99.4 64 68.8
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 3.4e-16 91.7 60 66.7
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.5e-11 76.3 57 71.9
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 1.6e-10 72.8 51 66.7
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 2.1e-10 72.4 49 69.4
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 6.2e-10 70.9 63 60.3
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.8e-09 69.3 43 74.4
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 8.9e-09 67.0 43 69.8
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 7.5e-08 63.9 48 64.6


User provided reference genes

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