Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00192 Brassica carinata HOM05D005994 ORTHO05D007322 7.8e-55 216.9 107 100.0
A01p21090 Brassica napus HOM05D005994 ORTHO05D007322 7.8e-55 216.9 107 100.0
BcaC09g50351 Brassica carinata HOM05D005994 ORTHO05D007322 1.1e-53 213.0 107 98.1
BolC1t02582H Brassica oleracea HOM05D005994 ORTHO05D007322 1.1e-53 213.0 107 98.1
Sp7g15010 Schrenkiella parvula HOM05D005994 ORTHO05D007322 1.1e-53 213.0 107 98.1
Thhalv10026636m.g Eutrema salsugineum HOM05D005994 ORTHO05D007322 1.5e-53 212.6 107 97.2
C01p26360 Brassica napus HOM05D005994 ORTHO05D007322 2.5e-53 211.8 107 98.1
AL7G38530 Arabidopsis lyrata HOM05D005994 ORTHO05D007322 5.6e-53 210.7 107 96.3
Carub.0007s2505 Capsella rubella HOM05D005994 ORTHO05D007322 7.3e-53 210.3 106 96.2
Aa31LG2G12530 Aethionema arabicum HOM05D005994 ORTHO05D007322 1.6e-52 209.1 107 95.3
AT4G16450 Arabidopsis thaliana HOM05D005994 ORTHO05D007322 4.7e-52 207.6 107 95.3
CARHR222840 Cardamine hirsuta HOM05D005994 ORTHO05D007322 3.1e-51 204.9 107 92.5
A03p49850 Brassica napus HOM05D005994 ORTHO05D007322 6.8e-51 203.8 104 98.1
C07p47910 Brassica napus HOM05D005994 ORTHO05D007322 6.8e-51 203.8 104 98.1
BolC7t45314H Brassica oleracea HOM05D005994 ORTHO05D007322 6.8e-51 203.8 104 98.1
BraA03t14080Z Brassica rapa HOM05D005994 ORTHO05D007322 6.8e-51 203.8 104 98.1
BcaC06g33480 Brassica carinata HOM05D005994 ORTHO05D007322 4.4e-50 201.1 105 96.2
Duzib192G0253 Durio zibethinus HOM05D005994 ORTHO05D007322 2.9e-49 198.4 102 94.1
THA.LOC104810390 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 6.4e-49 197.2 107 91.6
Duzib235G0800 Durio zibethinus HOM05D005994 ORTHO05D007322 2.4e-48 195.3 102 93.1
COL.COLO4_07784 Corchorus olitorius HOM05D005994 ORTHO05D007322 3.2e-48 194.9 102 91.2
Gohir.A06G204600 Gossypium hirsutum HOM05D005994 ORTHO05D007322 3.2e-48 194.9 102 90.2
Gohir.D06G216900 Gossypium hirsutum HOM05D005994 ORTHO05D007322 4.1e-48 194.5 102 90.2
Thecc.06G236600 Theobroma cacao HOM05D005994 ORTHO05D007322 7.1e-48 193.7 102 90.2
Gorai.010G249300 Gossypium raimondii HOM05D005994 ORTHO05D007322 1.2e-47 193.0 102 89.2
Manes.09G081660 Manihot esculenta HOM05D005994 ORTHO05D007322 1.6e-47 192.6 102 90.2
THA.LOC104815483 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 2.1e-47 192.2 103 91.3
TWI63G1647 Tripterygium wilfordii HOM05D005994 ORTHO05D007322 3.5e-47 191.4 102 89.2
Potri.006G016300 Populus trichocarpa HOM05D005994 ORTHO05D007322 1.3e-46 189.5 102 89.2
arahy.Tifrunner.gnm1.ann1.CR688Y Arachis hypogaea HOM05D005994 ORTHO05D007322 1.7e-46 189.1 101 88.1
arahy.Tifrunner.gnm1.ann1.R43TP7 Arachis hypogaea HOM05D005994 ORTHO05D007322 1.7e-46 189.1 101 88.1
Sed0000308 Sechium edule HOM05D005994 ORTHO05D007322 1.7e-46 189.1 100 91.0
Sed0000190 Sechium edule HOM05D005994 ORTHO05D007322 2.3e-46 188.7 100 91.0
ClCG01G010630 Citrullus lanatus HOM05D005994 ORTHO05D007322 3.0e-46 188.3 100 90.0
Cc05_g14690 Coffea canephora HOM05D005994 ORTHO05D007322 3.9e-46 188.0 100 89.0
MELO3C025540.2 Cucumis melo HOM05D005994 ORTHO05D007322 6.6e-46 187.2 100 89.0
Ah.06g181210 Amaranthus hybridus HOM05D005994 ORTHO05D007322 1.1e-45 186.4 101 89.1
HanXRQChr08g0213481 Helianthus annuus HOM05D005994 ORTHO05D007322 1.9e-45 185.7 100 86.0
PGR004G2260 Punica granatum HOM05D005994 ORTHO05D007322 1.9e-45 185.7 100 88.0
EL10Ac4g07614 Beta vulgaris HOM05D005994 ORTHO05D007322 2.5e-45 185.3 101 90.1
CANSAT56G3985 Cannabis sativa HOM05D005994 ORTHO05D007322 2.5e-45 185.3 100 90.0
Sabra06G0011700 Salix brachista HOM05D005994 ORTHO05D007322 2.5e-45 185.3 101 88.1
GSVIVG01037779001 Vitis vinifera HOM05D005994 ORTHO05D007322 2.5e-45 185.3 100 89.0
MSTRG.14470 Avicennia marina HOM05D005994 ORTHO05D007322 5.6e-45 184.1 100 87.0
Glyma.09G011900 Glycine max HOM05D005994 ORTHO05D007322 5.6e-45 184.1 101 86.1
Glyma.15G116500 Glycine max HOM05D005994 ORTHO05D007322 5.6e-45 184.1 101 86.1
VMungo0540G2179 Vigna mungo HOM05D005994 ORTHO05D007322 7.3e-45 183.7 101 87.1
MD00G1058600 Malus domestica HOM05D005994 ORTHO05D007322 9.5e-45 183.3 100 86.0
Hund23128 Selenicereus undatus HOM05D005994 ORTHO05D007322 9.5e-45 183.3 101 86.1
AUR62017059 Chenopodium quinoa HOM05D005994 ORTHO05D007322 1.2e-44 183.0 101 88.1
unitig_747.g21642 Utricularia gibba HOM05D005994 ORTHO05D007322 1.2e-44 183.0 101 85.1
Nitab4.5_0000163g0320 Nicotiana tabacum HOM05D005994 ORTHO05D007322 1.6e-44 182.6 101 84.2
Sc03g0008000 Simmondsia chinensis HOM05D005994 ORTHO05D007322 1.6e-44 182.6 100 87.0
CSS0045306 Camellia sinensis var. sinensis HOM05D005994 ORTHO05D007322 2.1e-44 182.2 100 86.0
Migut.M01676 Erythranthe guttata HOM05D005994 ORTHO05D007322 2.1e-44 182.2 100 86.0
TPR.G10599 Trifolium pratense HOM05D005994 ORTHO05D007322 2.1e-44 182.2 101 83.2
Lj6g0002817 Lotus japonicus HOM05D005994 ORTHO05D007322 2.8e-44 181.8 101 85.1
Lalb_Chr03g0035721 Lupinus albus HOM05D005994 ORTHO05D007322 2.8e-44 181.8 100 86.0
Prupe.4G007400 Prunus persica HOM05D005994 ORTHO05D007322 2.8e-44 181.8 100 86.0
Haze_06972 Corylus avellana HOM05D005994 ORTHO05D007322 3.6e-44 181.4 100 86.0
FAN25G0933 Fragaria x ananassa HOM05D005994 ORTHO05D007322 3.6e-44 181.4 100 85.0
Peaxi162Scf00955g00216 Petunia axillaris HOM05D005994 ORTHO05D007322 3.6e-44 181.4 100 85.0
Phvul.006G141600 Phaseolus vulgaris HOM05D005994 ORTHO05D007322 3.6e-44 181.4 101 86.1
Rhsim06G0226700 Rhododendron simsii HOM05D005994 ORTHO05D007322 3.6e-44 181.4 100 86.0
RcHm_v2.0_Chr5g0000881 Rosa chinensis HOM05D005994 ORTHO05D007322 3.6e-44 181.4 100 85.0
Ah.04g166430 Amaranthus hybridus HOM05D000063 ORTHO05D000906 4.7e-44 181.0 94 91.5
MSTRG.13010 Avicennia marina HOM05D005994 ORTHO05D007322 4.7e-44 181.0 100 85.0
Ciclev10016738m.g Citrus clementina HOM05D005994 ORTHO05D007322 4.7e-44 181.0 126 73.8
Sopen07g033490 Solanum pennellii HOM05D005994 ORTHO05D007322 4.7e-44 181.0 96 88.5
SGA_v2.0_scaffold168G38531 Striga asiatica HOM05D005994 ORTHO05D007322 4.7e-44 181.0 100 86.0
Nitab4.5_0001750g0060 Nicotiana tabacum HOM05D005994 ORTHO05D007322 6.2e-44 180.6 100 84.0
Actinidia05033 Actinidia chinensis HOM05D005994 ORTHO05D007322 8.1e-44 180.3 100 84.0
vmacro11561 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 8.1e-44 180.3 100 85.0
ATR0564G257 Amborella trichopoda HOM05D005994 ORTHO05D007322 1.1e-43 179.9 100 86.0
Aqoxy4G02214 Aquilegia oxysepala HOM05D005994 ORTHO05D007322 1.1e-43 179.9 101 83.2
Solyc07g065275.1 Solanum lycopersicum HOM05D005994 ORTHO05D007322 1.1e-43 179.9 100 85.0
AUR62040659 Chenopodium quinoa HOM05D005994 ORTHO05D007322 1.4e-43 179.5 101 87.1
CsaV3_1G017030 Cucumis sativus L. HOM05D005994 ORTHO05D007322 1.4e-43 179.5 94 91.5
CsaV3_UNG053450 Cucumis sativus L. HOM05D005994 ORTHO05D007322 1.4e-43 179.5 94 91.5
ECA246G1213 Erigeron canadensis HOM05D005994 ORTHO05D007322 1.4e-43 179.5 100 83.0
FAN21G1761 Fragaria x ananassa HOM05D005994 ORTHO05D007322 1.4e-43 179.5 100 84.0
Oeu005968.1 Olea europaea HOM05D005994 ORTHO05D007322 1.4e-43 179.5 100 85.0
Os08g0431500 Oryza sativa ssp. japonica HOM05D005994 ORTHO05D007322 1.4e-43 179.5 99 86.9
Eucgr.D00619 Eucalyptus grandis HOM05D005994 ORTHO05D007322 1.8e-43 179.1 99 85.9
Oeu005493.1 Olea europaea HOM05D005994 ORTHO05D007322 1.8e-43 179.1 100 84.0
Lalb_Chr19g0129971 Lupinus albus HOM05D005994 ORTHO05D007322 2.4e-43 178.7 100 84.0
QL05p068624 Quercus lobata HOM05D005994 ORTHO05D007322 2.4e-43 178.7 100 84.0
QL05p068978 Quercus lobata HOM05D005994 ORTHO05D007322 2.4e-43 178.7 100 84.0
Actinidia00094 Actinidia chinensis HOM05D005994 ORTHO05D007322 3.1e-43 178.3 100 84.0
CiPaw.10G079600 Carya illinoinensis HOM05D005994 ORTHO05D007322 3.1e-43 178.3 95 88.4
Nitab4.5_0000461g0100 Nicotiana tabacum HOM05D005994 ORTHO05D007322 3.1e-43 178.3 99 83.8
PGSC0003DMG400022186 Solanum tuberosum HOM05D005994 ORTHO05D007322 3.1e-43 178.3 96 88.5
MD10G1336200 Malus domestica HOM05D005994 ORTHO05D007322 4.0e-43 177.9 100 84.0
Medtr2g026500 Medicago truncatula HOM05D005994 ORTHO05D007322 5.2e-43 177.6 101 81.2
vmacro09668 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 5.2e-43 177.6 100 82.0
Cfa000074 Carpinus fangiana HOM05D005994 ORTHO05D007322 1.2e-42 176.4 100 84.0
Ca_00743_v3 Cicer arietinum L. HOM05D005994 ORTHO05D007322 1.2e-42 176.4 101 83.2
Zm00001eb179550 Zea mays HOM05D005994 ORTHO05D007322 1.2e-42 176.4 101 83.2
DCAR_013214 Daucus carota HOM05D005994 ORTHO05D007322 1.5e-42 176.0 100 82.0
Potri.016G009600 Populus trichocarpa HOM05D005994 ORTHO05D007322 1.5e-42 176.0 101 84.2
CAN.G337.28 Capsicum annuum HOM05D005994 ORTHO05D007322 3.4e-42 174.9 96 86.5
CDE12G0176 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 4.4e-42 174.5 100 82.0
PSO063G2191 Papaver somniferum HOM05D005994 ORTHO05D007322 5.8e-42 174.1 100 82.0
FvH4_3g00660 Fragaria vesca HOM05D005994 ORTHO05D007322 9.9e-42 173.3 94 86.2
Sabra16G0013400 Salix brachista HOM05D005994 ORTHO05D007322 2.2e-41 172.2 95 86.3
Psat1g178480 Pisum sativum HOM05D005994 ORTHO05D007322 2.9e-41 171.8 95 84.2
Lsat_1_v5_gn_5_8041 Lactuca sativa HOM05D000063 ORTHO05D000906 3.8e-41 171.4 94 84.0
PSO832G1566 Papaver somniferum HOM05D005994 ORTHO05D007322 4.9e-41 171.0 100 81.0
CDE01G0018 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 8.4e-41 170.2 100 81.0
MBI04_g07210_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 1.1e-40 169.9 94 85.1
HPP92_013264 Vanilla planifolia HOM05D005994 ORTHO05D007322 9.2e-40 166.8 99 78.8
Peaxi162Scf00285g00824 Petunia axillaris HOM05D005994 ORTHO05D007322 3.1e-35 151.8 104 73.1
Atru.chr1.2350 Acer truncatum HOM05D005994 ORTHO05D007322 3.4e-34 148.3 102 74.5
MBI04_g36325_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 3.5e-31 138.3 100 71.0
SEGI_25373 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 5.6e-29 131.0 79 77.2
Mapoly0008s0024 Marchantia polymorpha HOM05D005994 ORTHO05D007322 3.8e-25 118.2 93 60.2
Pp3c6_28950 Physcomitrium patens HOM05D005994 ORTHO05D007322 1.9e-24 115.9 93 57.0
SEGI_29999 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 6.0e-23 110.9 91 57.1
AagrBONN_evm.TU.Sc2ySwM_368.698 Anthoceros agrestis HOM05D005994 ORTHO05D007322 1.5e-21 106.3 93 51.6
AagrBONN_evm.TU.Sc2ySwM_117.3129 Anthoceros agrestis HOM05D005994 ORTHO05D007322 4.3e-21 104.8 92 54.3
CBR_g41406 Chara braunii HOM05D005994 ORTHO05D007322 5.6e-21 104.4 92 53.3
MCO11G626 Micromonas commoda HOM05D005994 ORTHO05D007322 3.7e-20 101.7 91 57.1
Cpa.g.sc3096.1 Carica papaya HOM05D005994 ORTHO05D007322 4.8e-20 101.3 60 80.0
Medtr2g097750 Medicago truncatula HOM05D005994 ORTHO05D007322 2.0e-18 95.9 59 74.6
TAR626G0394 Trochodendron aralioides HOM05D005994 ORTHO05D007322 2.9e-17 92.0 51 82.4
Nn5g27130 Nelumbo nucifera HOM05D005994 ORTHO05D007322 8.4e-17 90.5 52 78.8
SMO223G0003 Selaginella moellendorffii HOM05D005994 ORTHO05D007322 4.2e-16 88.2 89 49.4
HanXRQChr17g0564261 Helianthus annuus HOM05D005994 ORTHO05D007322 6.0e-15 84.3 48 81.2
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 3.0e-14 82.0 51 70.6
Dinv10313 Davidia involucrata HOM05D005994 ORTHO05D007322 1.1e-13 80.1 94 48.9
Nitab4.5_0005540g0030 Nicotiana tabacum HOM05D005994 ORTHO05D007322 4.3e-13 78.2 52 69.2
Zm00001eb041720 Zea mays HOM05D005994 ORTHO05D007322 7.4e-13 77.4 55 67.3
TAR627G0003 Trochodendron aralioides HOM05D005994 ORTHO05D007322 1.7e-09 66.2 43 72.1


User provided reference genes

Program Settings