Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00178 Brassica carinata HOM05D007475 ORTHO05D009529 5.4e-93 344.4 179 100.0
BcaNung00179 Brassica carinata HOM05D007475 ORTHO05D009529 5.4e-93 344.4 179 100.0
BolC1t02563H Brassica oleracea HOM05D007475 ORTHO05D009529 7.3e-90 334.0 179 96.6
BcaC09g50364 Brassica carinata HOM05D007475 ORTHO05D009529 9.5e-90 333.6 179 96.6
C01p26200 Brassica napus HOM05D007475 ORTHO05D009529 2.8e-89 332.0 179 96.1
A01p20870 Brassica napus HOM05D007475 ORTHO05D009529 2.6e-87 325.5 180 95.0
BraA01t02006Z Brassica rapa HOM05D007475 ORTHO05D009529 2.6e-87 325.5 180 95.0
BraA01t01784Z Brassica rapa HOM05D007475 ORTHO05D009529 9.9e-87 323.6 181 91.7
A01p18280 Brassica napus HOM05D007475 ORTHO05D009529 2.2e-86 322.4 181 91.2
A01p18300 Brassica napus HOM05D007475 ORTHO05D009529 6.4e-86 320.9 181 91.2
C01p23300 Brassica napus HOM05D007475 ORTHO05D009529 3.2e-85 318.5 184 89.7
BcaC09g49369 Brassica carinata HOM05D007475 ORTHO05D009529 5.4e-85 317.8 181 90.6
BcaC09g50609 Brassica carinata HOM05D007475 ORTHO05D009529 5.4e-85 317.8 181 90.6
C01p23280 Brassica napus HOM05D007475 ORTHO05D009529 5.4e-85 317.8 181 90.6
C01p37410 Brassica napus HOM05D007475 ORTHO05D009529 5.4e-85 317.8 181 90.6
BolC1t03708H Brassica oleracea HOM05D007475 ORTHO05D009529 5.4e-85 317.8 181 90.6
BcaC09g50606 Brassica carinata HOM05D007475 ORTHO05D009529 7.1e-85 317.4 184 89.1
BolC1t02264H Brassica oleracea HOM05D007475 ORTHO05D009529 1.2e-84 316.6 184 87.5
BolC1t02266H Brassica oleracea HOM05D007475 ORTHO05D009529 3.5e-84 315.1 184 87.0
BolC1t02261H Brassica oleracea HOM05D007475 ORTHO05D009529 4.6e-84 314.7 181 89.5
BcaNung03055 Brassica carinata HOM05D007475 ORTHO05D009529 7.8e-84 313.9 184 89.1
A01p18310 Brassica napus HOM05D007475 ORTHO05D009529 1.0e-83 313.5 181 90.1
A01p18330 Brassica napus HOM05D007475 ORTHO05D009529 3.9e-83 311.6 184 89.1
BraA01t01783Z Brassica rapa HOM05D007475 ORTHO05D009529 3.9e-83 311.6 184 89.1
BraA01t01785Z Brassica rapa HOM05D007475 ORTHO05D009529 3.9e-83 311.6 184 89.1
A01p18340 Brassica napus HOM05D007475 ORTHO05D009529 5.6e-82 307.8 183 89.6
BraA01t01786Z Brassica rapa HOM05D007475 ORTHO05D009529 7.3e-82 307.4 180 87.2
BcaB01g05180 Brassica carinata HOM05D007475 ORTHO05D009529 1.3e-81 306.6 185 88.1
C03p10150 Brassica napus HOM05D007475 ORTHO05D009529 1.3e-81 306.6 185 88.1
BolC3t13500H Brassica oleracea HOM05D007475 ORTHO05D009529 1.3e-81 306.6 185 88.1
BraA01t01782Z Brassica rapa HOM05D007475 ORTHO05D009529 1.3e-81 306.6 206 79.6
BraA03t10193Z Brassica rapa HOM05D007475 ORTHO05D009529 1.3e-81 306.6 185 88.1
BcaNung03058 Brassica carinata HOM05D007475 ORTHO05D009529 2.4e-80 302.4 199 80.4
C01p23290 Brassica napus HOM05D007475 ORTHO05D009529 1.2e-79 300.1 181 85.6
BolC1t02262H Brassica oleracea HOM05D007475 ORTHO05D009529 1.2e-79 300.1 181 85.6
BcaC09g50602 Brassica carinata HOM05D007475 ORTHO05D009529 2.6e-79 298.9 183 88.0
BcaNung03054 Brassica carinata HOM05D007475 ORTHO05D009529 7.1e-77 290.8 199 76.9
A03p08700 Brassica napus HOM05D007475 ORTHO05D009529 1.8e-64 249.6 134 92.5
A03p57110 Brassica napus HOM05D007475 ORTHO05D009529 5.5e-61 238.0 175 70.3
BcaB03g12530 Brassica carinata HOM05D007475 ORTHO05D009529 1.0e-59 233.8 179 68.7
Thhalv10026791m.g Eutrema salsugineum HOM05D007475 ORTHO05D009529 1.3e-57 226.9 183 67.2
BcaC07g38274 Brassica carinata HOM05D007475 ORTHO05D009529 4.6e-52 208.4 178 61.8
C08p10230 Brassica napus HOM05D007475 ORTHO05D009529 4.6e-52 208.4 178 61.8
BraA08t34007Z Brassica rapa HOM05D007475 ORTHO05D009529 1.0e-51 207.2 178 61.8
Carub.0007s1368 Capsella rubella HOM05D007475 ORTHO05D009529 3.0e-51 205.7 180 60.6
AL7G25640 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 8.7e-51 204.1 174 63.2
AL7G25650 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 1.5e-50 203.4 174 63.2
A08p20510 Brassica napus HOM05D007475 ORTHO05D009529 3.7e-49 198.7 178 60.7
AL7G25660 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 4.8e-49 198.4 178 60.7
BraA03t14781Z Brassica rapa HOM05D007475 ORTHO05D009529 1.1e-48 197.2 178 60.7
AT4G27140 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 6.9e-48 194.5 169 63.3
AT4G27150 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 1.2e-47 193.7 175 60.0
BcaC09g50612 Brassica carinata HOM05D007475 ORTHO05D009529 1.2e-47 193.7 113 89.4
AT4G27160 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 5.9e-47 191.4 175 61.1
AT4G27170 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 7.7e-47 191.0 180 60.0
BcaC09g50610 Brassica carinata HOM05D007475 ORTHO05D009529 7.7e-47 191.0 113 88.5
CARHR058020 Cardamine hirsuta HOM05D007475 ORTHO05D009529 6.5e-46 188.0 185 60.0
CARHR289420 Cardamine hirsuta HOM05D007475 ORTHO05D009529 8.5e-46 187.6 173 60.7
Carub.0007s1369 Capsella rubella HOM05D007475 ORTHO05D009529 1.1e-45 187.2 178 59.0
Carub.0007s1367 Capsella rubella HOM05D007475 ORTHO05D009529 4.2e-45 185.3 178 57.3
Carub.0007s1370 Capsella rubella HOM05D007475 ORTHO05D009529 7.4e-42 174.5 170 56.5
A03p57140 Brassica napus HOM05D007475 ORTHO05D009529 1.3e-41 173.7 170 55.9
Sp7g25120 Schrenkiella parvula HOM05D007475 ORTHO05D009529 2.2e-41 172.9 182 59.3
C07p55330 Brassica napus HOM05D007475 ORTHO05D009529 3.7e-41 172.2 170 55.3
BolC7t46014H Brassica oleracea HOM05D007475 ORTHO05D009529 3.7e-41 172.2 170 55.3
CARHR289410 Cardamine hirsuta HOM05D007475 ORTHO05D009529 6.3e-41 171.4 171 57.3
Aa31LG5G10270 Aethionema arabicum HOM05D007475 ORTHO05D009529 1.1e-40 170.6 179 53.1
Carub.0008s0615 Capsella rubella HOM05D007475 ORTHO05D009529 2.0e-39 166.4 170 56.5
Aa31LG5G10280 Aethionema arabicum HOM05D007475 ORTHO05D009529 1.3e-38 163.7 174 51.7
CARHR234800 Cardamine hirsuta HOM05D007475 ORTHO05D009529 4.2e-37 158.7 134 67.2
BcaC06g32708 Brassica carinata HOM05D007475 ORTHO05D009529 1.6e-36 156.8 170 54.7
Sp6g16690 Schrenkiella parvula HOM05D007475 ORTHO05D009529 9.1e-32 141.0 173 49.7
THA.LOC104822213 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.5e-31 139.0 170 48.8
AL8G30160 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 8.5e-30 134.4 170 46.5
AT5G54740 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 1.9e-29 133.3 170 47.1
THA.LOC104799881 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 6.1e-28 128.3 170 46.5
Aa31LG3G10660 Aethionema arabicum HOM05D007475 ORTHO05D009529 1.4e-27 127.1 160 44.4
THA.LOC104817656 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.4e-27 127.1 169 46.2
THA.LOC104822214 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.4e-27 127.1 169 46.2
THA.LOC104822215 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.4e-27 127.1 169 46.2
THA.LOC104799882 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.9e-27 125.6 170 45.3
Thhalv10015934m.g Eutrema salsugineum HOM05D007475 ORTHO05D009529 8.8e-27 124.4 170 44.1
THA.LOC104817654 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.8e-25 119.4 172 42.4
THA.LOC104813415 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.1e-24 115.9 169 42.0
BcaC09g50613 Brassica carinata HOM05D007475 ORTHO05D009529 9.1e-24 114.4 62 91.9
BcaNung00181 Brassica carinata HOM05D007475 ORTHO05D009529 2.6e-23 112.8 111 57.7
BcaC09g50611 Brassica carinata HOM05D007475 ORTHO05D009529 2.9e-22 109.4 62 88.7
THA.LOC104817655 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 8.5e-22 107.8 169 40.8
BcaB08g35832 Brassica carinata HOM05D007475 ORTHO05D009529 9.4e-21 104.4 132 50.8
Sp7g25110 Schrenkiella parvula HOM05D007475 ORTHO05D009529 4.7e-20 102.1 75 69.3
THA.LOC104809798 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.4e-16 89.7 129 41.1
Cpa.g.sc10.244 Carica papaya HOM05D007475 ORTHO05D009529 7.0e-16 88.2 170 37.1
BolC8t48701H Brassica oleracea HOM05D007475 ORTHO05D009529 1.0e-14 84.3 95 49.5
Ciclev10009848m.g Citrus clementina HOM05D007475 ORTHO05D005877 1.9e-13 80.1 167 32.9
Cpa.g.sc10.251 Carica papaya HOM05D007475 ORTHO05D009529 9.4e-13 77.8 172 34.3
Cpa.g.sc10.239 Carica papaya HOM05D007475 ORTHO05D009529 1.2e-12 77.4 171 32.7
Cpa.g.sc10.243 Carica papaya HOM05D007475 ORTHO05D009529 1.6e-12 77.0 169 34.9
Cpa.g.sc10.249 Carica papaya HOM05D007475 ORTHO05D009529 1.6e-12 77.0 169 32.5
Ciclev10009789m.g Citrus clementina HOM05D007475 ORTHO05D009529 1.5e-10 70.5 170 31.2
Cpa.g.sc97.59 Carica papaya HOM05D007475 ORTHO05D009529 4.4e-10 68.9 168 32.7
TWI39G0980 Tripterygium wilfordii HOM05D006536 ORTHO05D005877 1.6e-07 60.5 158 28.5
Manes.15G075900 Manihot esculenta HOM05D007475 ORTHO05D005877 2.0e-07 60.1 163 33.1
Sopen08g028810 Solanum pennellii HOM05D006536 ORTHO05D005877 8.6e-06 54.7 116 33.6


User provided reference genes

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