Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50366 Brassica carinata HOM05D007337 ORTHO05D004972 4.9e-145 517.7 244 100.0
BcaNung00176 Brassica carinata HOM05D007337 ORTHO05D004972 4.9e-145 517.7 244 100.0
BcaNung00177 Brassica carinata HOM05D007337 ORTHO05D004972 1.6e-116 422.9 250 82.4
BcaC09g50365 Brassica carinata HOM05D007337 ORTHO05D004972 2.7e-111 405.6 253 79.1
BraA01t02004Z Brassica rapa HOM05D007337 ORTHO05D004972 3.9e-110 401.7 254 78.7
BolC1t02562H Brassica oleracea HOM05D007337 ORTHO05D004972 6.6e-110 401.0 254 78.7
A01p20860 Brassica napus HOM05D007337 ORTHO05D004972 8.7e-110 400.6 252 78.2
C01p26190 Brassica napus HOM05D007337 ORTHO05D004972 4.8e-108 394.8 282 70.9
Carub.0007s2493 Capsella rubella HOM05D007337 ORTHO05D004972 1.3e-84 317.0 252 65.1
AT4G16545 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.4e-83 313.5 252 63.9
Thhalv10026831m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.3e-81 307.0 251 62.9
BcaC06g33493 Brassica carinata HOM05D007337 ORTHO05D004972 3.2e-80 302.4 242 62.0
A03p49980 Brassica napus HOM05D007337 ORTHO05D004972 3.2e-80 302.4 253 60.5
BraA03t14091Z Brassica rapa HOM05D007337 ORTHO05D004972 4.2e-80 302.0 253 60.5
AL1G32140 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.2e-79 300.4 263 58.2
BcaC07g37998 Brassica carinata HOM05D007337 ORTHO05D004972 1.2e-79 300.4 249 61.4
BcaNung02865 Brassica carinata HOM05D007337 ORTHO05D004972 4.6e-79 298.5 252 60.3
BolC8t48380H Brassica oleracea HOM05D007337 ORTHO05D004972 5.1e-78 295.0 252 60.3
Thhalv10000293m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 3.3e-77 292.4 250 60.4
A08p12570 Brassica napus HOM05D007337 ORTHO05D004972 5.7e-77 291.6 252 59.5
BraA08t33248Z Brassica rapa HOM05D007337 ORTHO05D004972 5.7e-77 291.6 252 59.5
Thhalv10026050m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 3.1e-75 285.8 247 60.3
AT2G03020 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 4.1e-75 285.4 240 62.1
Aa31LG2G12670 Aethionema arabicum HOM05D007337 ORTHO05D004972 2.6e-74 282.7 245 58.0
THA.LOC104815492 Tarenaya hassleriana HOM05D007337 ORTHO05D004972 8.5e-73 277.7 241 58.9
Sp7g15150 Schrenkiella parvula HOM05D007337 ORTHO05D004972 5.5e-72 275.0 241 59.8
AL7G38320 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 7.9e-71 271.2 269 55.0
Sp7g15140 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.0e-70 270.8 243 58.8
Thhalv10026211m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 5.1e-70 268.5 221 60.6
BraA01t02003Z Brassica rapa HOM05D007337 ORTHO05D004972 1.1e-69 267.3 241 55.6
Carub.0007s2489 Capsella rubella HOM05D007337 ORTHO05D004972 5.7e-69 265.0 264 54.5
BcaC09g50370 Brassica carinata HOM05D007337 ORTHO05D004972 2.2e-68 263.1 241 55.2
BolC1t02561H Brassica oleracea HOM05D007337 ORTHO05D004972 2.2e-68 263.1 241 55.2
A01p20850 Brassica napus HOM05D007337 ORTHO05D004972 1.4e-67 260.4 241 56.0
C01p26180 Brassica napus HOM05D007337 ORTHO05D004972 4.1e-67 258.8 241 56.0
Carub.0007s2491 Capsella rubella HOM05D007337 ORTHO05D004972 9.1e-67 257.7 265 53.2
BcaC09g50368 Brassica carinata HOM05D007337 ORTHO05D004972 5.0e-65 251.9 242 52.9
BcaNung00175 Brassica carinata HOM05D007337 ORTHO05D004972 5.0e-65 251.9 242 52.9
BcaC03g13098 Brassica carinata HOM05D007337 ORTHO05D004972 1.9e-64 250.0 240 55.8
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 5.5e-64 248.4 244 58.2
BcaC06g33497 Brassica carinata HOM05D007337 ORTHO05D004972 8.0e-63 244.6 242 58.3
C03p31540 Brassica napus HOM05D007337 ORTHO05D004972 1.0e-62 244.2 247 53.4
CARHR223020 Cardamine hirsuta HOM05D007337 ORTHO05D004972 5.2e-62 241.9 270 51.1
BcaC06g33495 Brassica carinata HOM05D007337 ORTHO05D004972 7.4e-61 238.0 242 55.8
BcaNung02862 Brassica carinata HOM05D007337 ORTHO05D004972 9.7e-61 237.7 239 56.1
Sp7g15130 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.3e-60 237.3 242 52.5
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 6.3e-60 235.0 242 57.0
BcaC09g50367 Brassica carinata HOM05D007337 ORTHO05D004972 5.3e-59 231.9 187 63.1
BcaC01g04975 Brassica carinata HOM05D007337 ORTHO05D004972 1.6e-58 230.3 240 52.1
AL7G38340 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 5.0e-57 225.3 239 51.9
BolC7t45327H Brassica oleracea HOM05D007337 ORTHO05D004972 1.4e-54 217.2 231 56.3
BolC3t15498H Brassica oleracea HOM05D007337 ORTHO05D004972 1.8e-54 216.9 226 52.7
BcaNung02864 Brassica carinata HOM05D007337 ORTHO05D004972 3.0e-54 216.1 268 47.0
A03p49990 Brassica napus HOM05D007337 ORTHO05D004972 8.8e-54 214.5 247 47.8
Sp7g15120 Schrenkiella parvula HOM05D007337 ORTHO05D004972 3.3e-53 212.6 244 47.5
AL7G38310 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 9.7e-53 211.1 254 52.0
AL7G38280 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.3e-52 210.7 269 45.0
CARHR223030 Cardamine hirsuta HOM05D007337 ORTHO05D004972 4.1e-51 205.7 271 47.2
BcaC06g33494 Brassica carinata HOM05D007337 ORTHO05D004972 5.3e-51 205.3 262 44.7
Carub.0007s2487 Capsella rubella HOM05D007337 ORTHO05D004972 1.2e-50 204.1 268 45.9
Sp7g15160 Schrenkiella parvula HOM05D007337 ORTHO05D004972 4.5e-50 202.2 269 43.5
AT4G16550 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 5.9e-50 201.8 244 46.3
C02p33330 Brassica napus HOM05D007337 ORTHO05D004972 5.9e-50 201.8 252 45.6
Carub.0007s2488 Capsella rubella HOM05D007337 ORTHO05D004972 2.2e-49 199.9 241 46.1
A02p20510 Brassica napus HOM05D007337 ORTHO05D004972 2.9e-49 199.5 252 45.2
BolC2t05997H Brassica oleracea HOM05D007337 ORTHO05D004972 1.9e-48 196.8 183 57.4
AL7G38300 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 9.4e-48 194.5 274 41.6
BolC2t09369H Brassica oleracea HOM05D007337 ORTHO05D004972 1.6e-47 193.7 276 42.8
BcaC03g15651 Brassica carinata HOM05D007337 ORTHO05D004972 2.7e-47 193.0 271 42.8
BolC7t45324H Brassica oleracea HOM05D007337 ORTHO05D004972 3.1e-43 179.5 247 44.5
Thhalv10026955m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 3.1e-43 179.5 277 39.7
AT4G16560 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 4.1e-43 179.1 289 38.1
A03p49960 Brassica napus HOM05D007337 ORTHO05D004972 2.5e-40 169.9 226 45.6
BraA03t14088Z Brassica rapa HOM05D007337 ORTHO05D004972 2.5e-40 169.9 226 45.6
BraA03t14089Z Brassica rapa HOM05D007337 ORTHO05D004972 7.2e-40 168.3 248 41.9
BcaC06g33489 Brassica carinata HOM05D007337 ORTHO05D004972 4.7e-39 165.6 243 41.2
A03p49970 Brassica napus HOM05D007337 ORTHO05D004972 1.8e-38 163.7 245 41.2
BcaC06g33490 Brassica carinata HOM05D007337 ORTHO05D004972 6.8e-38 161.8 209 46.9
C07p48000 Brassica napus HOM05D007337 ORTHO05D004972 5.7e-37 158.7 270 38.5
C07p48020 Brassica napus HOM05D007337 ORTHO05D004972 3.7e-36 156.0 135 57.0
BcaC06g33478 Brassica carinata HOM05D007337 ORTHO05D004972 4.9e-36 155.6 246 41.5
C07p47780 Brassica napus HOM05D007337 ORTHO05D004972 4.9e-36 155.6 245 41.2
BolC7t45326H Brassica oleracea HOM05D007337 ORTHO05D004972 4.9e-36 155.6 131 56.5
BolC7t45302H Brassica oleracea HOM05D007337 ORTHO05D004972 2.4e-35 153.3 246 40.7
Carub.0007s2492 Capsella rubella HOM05D007337 ORTHO05D004972 4.5e-34 149.1 101 74.3
CARHR222970 Cardamine hirsuta HOM05D007337 ORTHO05D004972 3.8e-33 146.0 110 60.9
BraA03t14092Z Brassica rapa HOM05D007337 ORTHO05D004972 1.6e-31 140.6 112 66.1
CARHR215530 Cardamine hirsuta HOM05D007337 ORTHO05D004972 1.4e-30 137.5 85 77.6
C07p47990 Brassica napus HOM05D007337 ORTHO05D004972 2.3e-30 136.7 243 37.4
BcaC06g31366 Brassica carinata HOM05D008086 ORTHO05D004972 3.1e-30 136.3 222 37.4
C07p31290 Brassica napus HOM05D008086 ORTHO05D004972 3.1e-30 136.3 241 33.6
AT4G16540 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.5e-29 134.0 116 57.8
BcaC06g34235 Brassica carinata HOM05D008086 ORTHO05D004972 1.5e-29 134.0 240 33.3
BraA06t27366Z Brassica rapa HOM05D008086 ORTHO05D004972 2.0e-29 133.7 223 38.1
BolC7t43666H Brassica oleracea HOM05D008086 ORTHO05D004972 4.4e-29 132.5 243 33.7
BcaC06g34237 Brassica carinata HOM05D008086 ORTHO05D004972 5.8e-29 132.1 255 33.3
C07p31230 Brassica napus HOM05D008086 ORTHO05D004972 5.8e-29 132.1 229 36.7
A06p44950 Brassica napus HOM05D008086 ORTHO05D004972 7.5e-29 131.7 222 37.8
BolC7t43664H Brassica oleracea HOM05D008086 ORTHO05D004972 9.8e-29 131.3 229 36.7
BcaC06g31364 Brassica carinata HOM05D008086 ORTHO05D004972 2.2e-28 130.2 241 33.6
C07p31250 Brassica napus HOM05D008086 ORTHO05D004972 2.2e-28 130.2 243 33.7
CARHR173760 Cardamine hirsuta HOM05D008086 ORTHO05D004972 3.2e-27 126.3 210 34.8
THA.LOC104798375 Tarenaya hassleriana HOM05D008086 ORTHO05D004972 3.2e-27 126.3 212 34.9
QL12p012450 Quercus lobata HOM05D007337 ORTHO05D004972 9.2e-27 124.8 245 34.3
A06p44930 Brassica napus HOM05D008086 ORTHO05D004972 1.6e-26 124.0 213 35.2
BraA06t27364Z Brassica rapa HOM05D008086 ORTHO05D004972 1.6e-26 124.0 213 35.2
AL8G10360 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 2.0e-26 123.6 241 34.0
AL8G10380 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 2.0e-26 123.6 216 35.6
Thhalv10001213m.g Eutrema salsugineum HOM05D008086 ORTHO05D004972 2.7e-26 123.2 208 33.7
BcaC06g31356 Brassica carinata HOM05D008086 ORTHO05D004972 1.0e-25 121.3 257 31.1
Carub.0008s0020 Capsella rubella HOM05D008086 ORTHO05D004972 1.3e-25 120.9 245 32.2
CARHR173730 Cardamine hirsuta HOM05D008086 ORTHO05D004972 1.3e-25 120.9 216 31.9
BcaNung00180 Brassica carinata HOM05D007337 ORTHO05D004972 1.7e-25 120.6 62 93.5
AT4G16555 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 6.6e-25 118.6 128 51.6
A02p30530 Brassica napus HOM05D008086 ORTHO05D004972 6.6e-25 118.6 213 35.7
CARHR174690 Cardamine hirsuta HOM05D008086 ORTHO05D004972 4.3e-24 115.9 213 33.3
BcaC03g16909 Brassica carinata HOM05D008086 ORTHO05D004972 5.6e-24 115.5 215 36.7
BolC2t10843H Brassica oleracea HOM05D008086 ORTHO05D004972 1.2e-23 114.4 212 36.3
Aa31LG9G5430 Aethionema arabicum HOM05D008086 ORTHO05D004972 1.6e-23 114.0 223 33.2
BcaC03g17198 Brassica carinata HOM05D008086 ORTHO05D004972 2.8e-23 113.2 220 34.1
C02p51250 Brassica napus HOM05D008086 ORTHO05D004972 2.8e-23 113.2 220 34.1
BolC2t11215H Brassica oleracea HOM05D008086 ORTHO05D004972 2.8e-23 113.2 220 34.1
BcaC03g16869 Brassica carinata HOM05D008086 ORTHO05D004972 5.2e-22 109.0 219 32.0
BolC7t45322H Brassica oleracea HOM05D007337 ORTHO05D004972 8.9e-22 108.2 117 48.7
Thecc.03G253000 Theobroma cacao HOM05D008086 ORTHO05D004972 5.8e-21 105.5 104 49.0
BcaC04g19776 Brassica carinata HOM05D008086 ORTHO05D004972 7.5e-21 105.1 216 30.6
C09p51830 Brassica napus HOM05D008086 ORTHO05D004972 7.5e-21 105.1 216 30.6
BcaC06g31429 Brassica carinata HOM05D008086 ORTHO05D004972 9.8e-21 104.8 217 30.4
BcaNung02867 Brassica carinata HOM05D007337 ORTHO05D004972 9.8e-21 104.8 95 53.7
BolC9t58045H Brassica oleracea HOM05D008086 ORTHO05D004972 9.8e-21 104.8 216 30.1
CARHR183270 Cardamine hirsuta HOM05D008086 ORTHO05D004972 1.3e-20 104.4 213 32.9
BcaC06g34302 Brassica carinata HOM05D008086 ORTHO05D004972 1.7e-20 104.0 217 29.0
C07p30570 Brassica napus HOM05D008086 ORTHO05D004972 1.7e-20 104.0 219 29.2
BolC2t10802H Brassica oleracea HOM05D008086 ORTHO05D004972 2.2e-20 103.6 216 33.3
BcaC06g31340 Brassica carinata HOM05D008086 ORTHO05D004972 2.9e-20 103.2 219 29.7
A10p16630 Brassica napus HOM05D008086 ORTHO05D004972 4.9e-20 102.4 215 31.2
BolC1t05406H Brassica oleracea HOM05D008086 ORTHO05D004972 4.9e-20 102.4 217 29.5
C07p30540 Brassica napus HOM05D008086 ORTHO05D004972 6.4e-20 102.1 190 31.6
BraA06t27411Z Brassica rapa HOM05D008086 ORTHO05D004972 6.4e-20 102.1 212 30.2
A01p41900 Brassica napus HOM05D008086 ORTHO05D004972 8.3e-20 101.7 218 30.7
CARHR173740 Cardamine hirsuta HOM05D008086 ORTHO05D004972 1.9e-19 100.5 217 30.0
CARHR223010 Cardamine hirsuta HOM05D007337 ORTHO05D004972 9.2e-19 98.2 76 59.2
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 2.1e-18 97.1 218 29.8
BraA02t08071Z Brassica rapa HOM05D008086 ORTHO05D004972 2.1e-18 97.1 218 32.1
AT5G47590 Arabidopsis thaliana HOM05D008086 ORTHO05D004972 4.6e-18 95.9 109 44.0
BolC4t21835H Brassica oleracea HOM05D007337 ORTHO05D004972 4.6e-18 95.9 248 32.3
BolC4t21837H Brassica oleracea HOM05D007337 ORTHO05D004972 4.6e-18 95.9 248 32.3
BolC4t21838H Brassica oleracea HOM05D007337 ORTHO05D004972 4.6e-18 95.9 248 32.3
C02p48110 Brassica napus HOM05D008086 ORTHO05D004972 1.7e-17 94.0 196 34.2
BraA02t08074Z Brassica rapa HOM05D008086 ORTHO05D004972 1.1e-16 91.3 110 42.7
BcaB07g30809 Brassica carinata HOM05D008086 ORTHO05D004972 3.3e-16 89.7 195 32.3
A02p30570 Brassica napus HOM05D008086 ORTHO05D004972 1.2e-15 87.8 110 41.8
BcaC06g34304 Brassica carinata HOM05D008086 ORTHO05D004972 2.8e-15 86.7 194 30.4
C02p47660 Brassica napus HOM05D008086 ORTHO05D004972 1.8e-14 84.0 202 29.7
A06p45430 Brassica napus HOM05D008086 ORTHO05D004972 2.3e-14 83.6 200 28.0
BcaNung07056 Brassica carinata HOM05D008086 ORTHO05D004972 1.2e-13 81.3 195 27.7
BraA02t08035Z Brassica rapa HOM05D008086 ORTHO05D004972 1.2e-13 81.3 221 28.1
BcaC03g16910 Brassica carinata HOM05D008086 ORTHO05D004972 3.2e-11 73.2 87 44.8
Rhsim09G0039000 Rhododendron simsii HOM05D007337 ORTHO05D000958 6.6e-09 65.5 98 36.7
PGSC0003DMG400004807 Solanum tuberosum HOM05D001099 ORTHO05D010560 4.3e-08 62.8 100 33.0
AUR62018020 Chenopodium quinoa HOM05D025645 ORTHO05D015279 1.6e-07 60.8 117 35.9
BraA02t08072Z Brassica rapa HOM05D008086 ORTHO05D004972 2.1e-07 60.5 132 31.1
COL.COLO4_37190 Corchorus olitorius HOM05D007337 ORTHO05D010560 2.1e-07 60.5 240 24.2
CAN.G1218.24 Capsicum annuum HOM05D001099 ORTHO05D000958 2.8e-07 60.1 100 31.0
Solyc08g078710.3 Solanum lycopersicum HOM05D001099 ORTHO05D010560 4.7e-07 59.3 139 25.9
Actinidia02125 Actinidia chinensis HOM05D001099 ORTHO05D000958 6.2e-07 58.9 98 33.7
A02p30190 Brassica napus HOM05D008086 ORTHO05D004972 6.2e-07 58.9 53 49.1
BolC7t45323H Brassica oleracea HOM05D007337 ORTHO05D004972 8.1e-07 58.5 86 39.5
A02p30540 Brassica napus HOM05D008086 ORTHO05D004972 1.1e-06 58.2 125 31.2
Nn6g33979 Nelumbo nucifera HOM05D001099 ORTHO05D000958 1.1e-06 58.2 111 31.5
Sopen08g027190 Solanum pennellii HOM05D001099 ORTHO05D010560 1.1e-06 58.2 98 31.6
C07p47770 Brassica napus HOM05D007337 ORTHO05D004972 2.4e-06 57.0 45 53.3
QL12p012439 Quercus lobata HOM05D001099 ORTHO05D000958 4.0e-06 56.2 96 34.4
Dinv21631 Davidia involucrata HOM05D001099 ORTHO05D010560 5.2e-06 55.8 104 33.7
Nitab4.5_0000312g0140 Nicotiana tabacum HOM05D001099 ORTHO05D010560 6.8e-06 55.5 98 30.6


User provided reference genes

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