Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00167 Brassica carinata HOM05D003437 ORTHO05D004070 5.9e-89 330.9 172 100.0
A01p20740 Brassica napus HOM05D003437 ORTHO05D004070 8.3e-83 310.5 172 94.2
BraA01t01998Z Brassica rapa HOM05D003437 ORTHO05D004070 8.3e-83 310.5 172 94.2
C01p26090 Brassica napus HOM05D003437 ORTHO05D004070 5.4e-82 307.8 172 93.0
BolC1t02554H Brassica oleracea HOM05D003437 ORTHO05D004070 6.0e-81 304.3 172 92.4
BcaC09g50386 Brassica carinata HOM05D003437 ORTHO05D004070 5.0e-80 301.2 172 92.4
Thhalv10027002m.g Eutrema salsugineum HOM05D003437 ORTHO05D004070 2.0e-76 289.3 176 85.8
AT4G16600 Arabidopsis thaliana HOM05D003437 ORTHO05D004070 1.1e-74 283.5 176 83.5
Sp7g15220 Schrenkiella parvula HOM05D003437 ORTHO05D004070 1.2e-73 280.0 176 83.5
CARHR223100 Cardamine hirsuta HOM05D003437 ORTHO05D004070 6.0e-73 277.7 174 83.3
AL7G38160 Arabidopsis lyrata HOM05D003437 ORTHO05D004070 3.3e-71 271.9 176 80.7
Carub.0007s2480 Capsella rubella HOM05D003437 ORTHO05D004070 7.3e-71 270.8 177 78.0
Sp4g17980 Schrenkiella parvula HOM05D003437 ORTHO05D004070 1.6e-65 253.1 176 73.9
Thhalv10016563m.g Eutrema salsugineum HOM05D003437 ORTHO05D004070 2.3e-64 249.2 176 72.2
AL4G31800 Arabidopsis lyrata HOM05D003437 ORTHO05D004070 8.6e-64 247.3 176 73.9
Carub.0004s1744 Capsella rubella HOM05D003437 ORTHO05D004070 8.6e-64 247.3 176 72.7
CARHR129950 Cardamine hirsuta HOM05D003437 ORTHO05D004070 8.6e-64 247.3 176 71.0
BcaB02g09398 Brassica carinata HOM05D003437 ORTHO05D004070 1.9e-63 246.1 176 72.2
AT2G35710 Arabidopsis thaliana HOM05D003437 ORTHO05D004070 2.5e-63 245.7 176 72.7
A05p10000 Brassica napus HOM05D003437 ORTHO05D004070 2.5e-63 245.7 176 71.0
BraA05t19939Z Brassica rapa HOM05D003437 ORTHO05D004070 2.5e-63 245.7 176 71.0
BraA04t18214Z Brassica rapa HOM05D003437 ORTHO05D004070 3.3e-63 245.4 176 71.0
Aa31LG2G12720 Aethionema arabicum HOM05D003437 ORTHO05D004070 7.3e-63 244.2 176 70.5
BcaC02g07678 Brassica carinata HOM05D003437 ORTHO05D004070 7.3e-63 244.2 176 70.5
BolC4t27944H Brassica oleracea HOM05D003437 ORTHO05D004070 7.3e-63 244.2 176 70.5
BcaC02g11694 Brassica carinata HOM05D003437 ORTHO05D004070 1.6e-62 243.0 176 70.5
A04p27160 Brassica napus HOM05D003437 ORTHO05D004070 1.6e-62 243.0 176 70.5
C04p12280 Brassica napus HOM05D003437 ORTHO05D004070 1.6e-62 243.0 176 70.5
BolC4t22874H Brassica oleracea HOM05D003437 ORTHO05D004070 1.6e-62 243.0 176 70.5
C04p64670 Brassica napus HOM05D003437 ORTHO05D004070 2.1e-62 242.7 176 70.5
BcaB06g28863 Brassica carinata HOM05D003437 ORTHO05D004070 1.2e-60 236.9 176 68.8
Aa31LG9G12190 Aethionema arabicum HOM05D003437 ORTHO05D004070 6.4e-59 231.1 176 67.6
THA.LOC104814476 Tarenaya hassleriana HOM05D003437 ORTHO05D004070 7.1e-58 227.6 176 65.9
THA.LOC104812777 Tarenaya hassleriana HOM05D003437 ORTHO05D004070 1.9e-55 219.5 177 67.2
CSS0020750 Camellia sinensis var. sinensis HOM05D003437 ORTHO05D004070 2.1e-54 216.1 176 65.3
Cfa012717 Carpinus fangiana HOM05D003437 ORTHO05D004070 6.2e-54 214.5 176 63.1
Migut.A00946 Erythranthe guttata HOM05D003437 ORTHO05D004070 8.1e-54 214.2 176 60.8
MSTRG.25525 Avicennia marina HOM05D003437 ORTHO05D004070 1.8e-53 213.0 176 61.4
Hma1.2p1_1172F.1_g263610 Hydrangea macrophylla HOM05D003437 ORTHO05D004070 2.4e-53 212.6 176 60.8
THA.LOC104815495 Tarenaya hassleriana HOM05D003437 ORTHO05D004070 3.1e-53 212.2 172 64.5
vmacro14084 Vaccinium macrocarpon HOM05D003437 ORTHO05D004070 3.1e-53 212.2 174 62.1
Rhsim07G0108400 Rhododendron simsii HOM05D003437 ORTHO05D004070 5.3e-53 211.5 174 62.1
CSS0029742 Camellia sinensis var. sinensis HOM05D003437 ORTHO05D004070 1.2e-52 210.3 173 62.4
CSS0034933 Camellia sinensis var. sinensis HOM05D003437 ORTHO05D004070 1.2e-52 210.3 173 62.4
Haze_07915 Corylus avellana HOM05D003437 ORTHO05D004070 1.2e-52 210.3 176 61.9
Manes.02G039400 Manihot esculenta HOM05D003437 ORTHO05D004070 2.0e-52 209.5 176 62.5
Dinv21637 Davidia involucrata HOM05D003437 ORTHO05D004070 3.4e-52 208.8 176 61.4
Eucgr.D02078 Eucalyptus grandis HOM05D003437 ORTHO05D004070 7.6e-52 207.6 176 60.8
QL12p012159 Quercus lobata HOM05D003437 ORTHO05D004070 1.3e-51 206.8 175 57.1
Dinv39146 Davidia involucrata HOM05D003437 ORTHO05D004070 2.9e-51 205.7 176 61.4
Cc08_g12440 Coffea canephora HOM05D003437 ORTHO05D004070 8.4e-51 204.1 176 59.7
Lj2g0015856 Lotus japonicus HOM05D003437 ORTHO05D004070 8.4e-51 204.1 176 60.8
Atru.chr9.1314 Acer truncatum HOM05D003437 ORTHO05D004070 1.4e-50 203.4 176 58.5
TWI81G0303 Tripterygium wilfordii HOM05D003437 ORTHO05D004070 7.1e-50 201.1 176 58.5
CiPaw.12G052900 Carya illinoinensis HOM05D003437 ORTHO05D004070 9.3e-50 200.7 176 56.8
Potri.001G158000 Populus trichocarpa HOM05D003437 ORTHO05D004070 1.2e-49 200.3 175 60.0
Oeu006979.1 Olea europaea HOM05D003437 ORTHO05D004070 1.6e-49 199.9 176 57.4
PGR031G3334 Punica granatum HOM05D003437 ORTHO05D004070 1.6e-49 199.9 177 58.2
TWI60G0877 Tripterygium wilfordii HOM05D003437 ORTHO05D004070 1.6e-49 199.9 176 58.5
vmacro00199 Vaccinium macrocarpon HOM05D003437 ORTHO05D004070 1.6e-49 199.9 176 58.0
MSTRG.12097 Avicennia marina HOM05D003437 ORTHO05D004070 2.7e-49 199.1 175 57.1
Lj8A262T38 Lonicera japonica HOM05D003437 ORTHO05D004070 2.7e-49 199.1 176 58.5
Sabra01G0133500 Salix brachista HOM05D003437 ORTHO05D004070 4.6e-49 198.4 175 59.4
Sabra03G0047200 Salix brachista HOM05D003437 ORTHO05D004070 4.6e-49 198.4 172 60.5
Actinidia14429 Actinidia chinensis HOM05D003437 ORTHO05D004070 7.9e-49 197.6 176 56.8
VMungo1215G3028 Vigna mungo HOM05D003437 ORTHO05D004070 1.0e-48 197.2 177 60.5
Ciclev10019980m.g Citrus clementina HOM05D003437 ORTHO05D004070 1.3e-48 196.8 176 56.8
SGA_v2.0_scaffold120G32885 Striga asiatica HOM05D003437 ORTHO05D004070 1.3e-48 196.8 176 56.8
TPR.G7346 Trifolium pratense HOM05D003437 ORTHO05D004070 1.8e-48 196.4 176 58.5
TAR629G2039 Trochodendron aralioides HOM05D003437 ORTHO05D004070 1.8e-48 196.4 173 59.0
Ca_21965_v3 Cicer arietinum L. HOM05D003437 ORTHO05D004070 3.0e-48 195.7 173 60.1
Potri.003G076800 Populus trichocarpa HOM05D003437 ORTHO05D004070 3.0e-48 195.7 172 60.5
Sc01g0008450 Simmondsia chinensis HOM05D003437 ORTHO05D004070 3.0e-48 195.7 177 59.9
CiPaw.11G079100 Carya illinoinensis HOM05D003437 ORTHO05D004070 3.9e-48 195.3 176 56.8
Medtr4g100950 Medicago truncatula HOM05D003437 ORTHO05D004070 6.7e-48 194.5 176 58.0
Glyma.01G209600 Glycine max HOM05D003437 ORTHO05D004070 8.7e-48 194.1 177 58.2
Lalb_Chr05g0221271 Lupinus albus HOM05D003437 ORTHO05D004070 8.7e-48 194.1 176 59.7
Phvul.003G220400 Phaseolus vulgaris HOM05D003437 ORTHO05D004070 8.7e-48 194.1 176 58.5
Lalb_Chr05g0214481 Lupinus albus HOM05D003437 ORTHO05D004070 1.1e-47 193.7 176 58.5
GSVIVG01006161001 Vitis vinifera HOM05D003437 ORTHO05D004070 1.1e-47 193.7 174 59.2
Glyma.11G032600 Glycine max HOM05D003437 ORTHO05D004070 1.5e-47 193.4 174 59.2
Nitab4.5_0005960g0010 Nicotiana tabacum HOM05D003437 ORTHO05D004070 2.5e-47 192.6 177 56.5
Nitab4.5_0001076g0110 Nicotiana tabacum HOM05D003437 ORTHO05D004070 3.3e-47 192.2 177 56.5
Oeu020147.1 Olea europaea HOM05D003437 ORTHO05D004070 4.3e-47 191.8 176 57.4
arahy.Tifrunner.gnm1.ann1.L44UVB Arachis hypogaea HOM05D003437 ORTHO05D004070 5.6e-47 191.4 176 58.5
Nitab4.5_0000312g0110 Nicotiana tabacum HOM05D003437 ORTHO05D004070 5.6e-47 191.4 177 55.9
Phvul.002G063000 Phaseolus vulgaris HOM05D003437 ORTHO05D004070 7.4e-47 191.0 177 59.9
Medtr5g012590 Medicago truncatula HOM05D003437 ORTHO05D004070 9.6e-47 190.7 176 55.7
arahy.Tifrunner.gnm1.ann1.IP6Y6A Arachis hypogaea HOM05D003437 ORTHO05D004070 1.6e-46 189.9 176 58.0
CAN.G1367.8 Capsicum annuum HOM05D003437 ORTHO05D004070 1.6e-46 189.9 177 56.5
Lalb_Chr09g0330131 Lupinus albus HOM05D003437 ORTHO05D004070 1.6e-46 189.9 176 58.0
Lj4g0025080 Lotus japonicus HOM05D003437 ORTHO05D004070 2.1e-46 189.5 176 57.4
Psat2g178320 Pisum sativum HOM05D003437 ORTHO05D004070 2.1e-46 189.5 176 57.4
AUR62042795 Chenopodium quinoa HOM05D003437 ORTHO05D004070 2.8e-46 189.1 177 57.6
Duzib068G1097 Durio zibethinus HOM05D003437 ORTHO05D004070 3.7e-46 188.7 176 55.1
Glyma.05G059300 Glycine max HOM05D003437 ORTHO05D004070 4.8e-46 188.3 176 58.0
Nitab4.5_0000618g0030 Nicotiana tabacum HOM05D003437 ORTHO05D004070 4.8e-46 188.3 177 54.8
Glyma.17G141600 Glycine max HOM05D003437 ORTHO05D004070 6.2e-46 188.0 176 58.0
Os04g0553800 Oryza sativa ssp. japonica HOM05D003437 ORTHO05D004070 6.2e-46 188.0 177 58.2
VMungo0251G1996 Vigna mungo HOM05D003437 ORTHO05D004070 8.1e-46 187.6 177 57.1
Peaxi162Scf00174g00025 Petunia axillaris HOM05D003437 ORTHO05D004070 1.1e-45 187.2 177 56.5
Hund11596 Selenicereus undatus HOM05D003437 ORTHO05D004070 1.1e-45 187.2 177 59.3
Psat4g072160 Pisum sativum HOM05D003437 ORTHO05D004070 1.4e-45 186.8 176 56.2
Lalb_Chr16g0379581 Lupinus albus HOM05D003437 ORTHO05D004070 1.8e-45 186.4 176 57.4
Nn6g33961 Nelumbo nucifera HOM05D003437 ORTHO05D004070 1.8e-45 186.4 176 55.7
PSO017G2532 Papaver somniferum HOM05D003437 ORTHO05D004070 1.8e-45 186.4 176 56.2
PSO170G5518 Papaver somniferum HOM05D003437 ORTHO05D004070 1.8e-45 186.4 176 56.2
Ca_24576_v3 Cicer arietinum L. HOM05D003437 ORTHO05D004070 3.1e-45 185.7 172 57.6
COL.COLO4_37179 Corchorus olitorius HOM05D003437 ORTHO05D004070 3.1e-45 185.7 178 55.6
TAR636G0838 Trochodendron aralioides HOM05D003437 ORTHO05D004070 3.1e-45 185.7 173 56.1
Zm00001eb074520 Zea mays HOM05D003437 ORTHO05D004070 4.0e-45 185.3 177 56.5
Thecc.03G251600 Theobroma cacao HOM05D003437 ORTHO05D004070 6.9e-45 184.5 176 55.1
Prupe.5G069400 Prunus persica HOM05D003437 ORTHO05D004070 9.0e-45 184.1 163 58.3
SalBow6G4064 Salvia bowleyana HOM05D003437 ORTHO05D004070 9.0e-45 184.1 176 55.1
Solyc06g060710.4 Solanum lycopersicum HOM05D003437 ORTHO05D004070 9.0e-45 184.1 174 55.2
PGSC0003DMG400004758 Solanum tuberosum HOM05D003437 ORTHO05D004070 9.0e-45 184.1 176 54.0
PGSC0003DMG400011872 Solanum tuberosum HOM05D003437 ORTHO05D004070 9.0e-45 184.1 174 55.2
TPR.G25920 Trifolium pratense HOM05D003437 ORTHO05D004070 9.0e-45 184.1 173 58.4
AUR62007516 Chenopodium quinoa HOM05D003437 ORTHO05D004070 1.2e-44 183.7 177 55.4
HanXRQChr17g0549291 Helianthus annuus HOM05D003437 ORTHO05D004070 1.2e-44 183.7 177 55.9
Zm00001eb429610 Zea mays HOM05D003437 ORTHO05D004070 1.5e-44 183.3 177 55.9
ATR0317G058 Amborella trichopoda HOM05D003437 ORTHO05D004070 2.0e-44 183.0 176 53.4
MD06G1058200 Malus domestica HOM05D003437 ORTHO05D004070 2.0e-44 183.0 163 56.4
Sopen06g020830 Solanum pennellii HOM05D003437 ORTHO05D004070 2.0e-44 183.0 174 54.6
Sopen08g027130 Solanum pennellii HOM05D003437 ORTHO05D004070 2.6e-44 182.6 176 53.4
Duzib084G0678 Durio zibethinus HOM05D003437 ORTHO05D004070 3.4e-44 182.2 176 53.4
Solyc08g078650.3 Solanum lycopersicum HOM05D003437 ORTHO05D004070 4.5e-44 181.8 176 53.4
CDE02G3542 Ceratophyllum demersum HOM05D003437 ORTHO05D004070 5.8e-44 181.4 176 53.4
CDE11G0502 Ceratophyllum demersum HOM05D003437 ORTHO05D004070 7.6e-44 181.0 176 52.8
FAN13G2103 Fragaria x ananassa HOM05D003437 ORTHO05D004070 9.9e-44 180.6 161 57.1
Peaxi162Scf02065g00021 Petunia axillaris HOM05D003437 ORTHO05D004070 9.9e-44 180.6 166 57.2
HPP92_021036 Vanilla planifolia HOM05D003437 ORTHO05D004070 9.9e-44 180.6 177 53.1
EL10Ac5g13070 Beta vulgaris HOM05D003437 ORTHO05D004070 1.7e-43 179.9 177 53.7
FAN08G2158 Fragaria x ananassa HOM05D003437 ORTHO05D004070 2.2e-43 179.5 161 57.1
FvH4_5g18860 Fragaria vesca HOM05D003437 ORTHO05D004070 2.9e-43 179.1 161 57.1
FAN04G0564 Fragaria x ananassa HOM05D003437 ORTHO05D004070 2.9e-43 179.1 161 57.1
FAN18G0225 Fragaria x ananassa HOM05D003437 ORTHO05D004070 2.9e-43 179.1 161 57.1
FAN18G1917 Fragaria x ananassa HOM05D003437 ORTHO05D004070 2.9e-43 179.1 161 57.1
CANSAT21G1509 Cannabis sativa HOM05D003437 ORTHO05D004070 3.8e-43 178.7 171 56.7
Duzib136G0005 Durio zibethinus HOM05D003437 ORTHO05D004070 3.8e-43 178.7 176 53.4
Duzib205G0280 Durio zibethinus HOM05D003437 ORTHO05D004070 3.8e-43 178.7 176 53.4
HPP92_027429 Vanilla planifolia HOM05D003437 ORTHO05D004070 3.8e-43 178.7 174 53.4
Zm00001eb391530 Zea mays HOM05D003437 ORTHO05D004070 3.8e-43 178.7 177 52.0
Zm00001eb023520 Zea mays HOM05D003437 ORTHO05D004070 4.9e-43 178.3 177 50.8
Aqoxy7G00748 Aquilegia oxysepala HOM05D003437 ORTHO05D004070 1.4e-42 176.8 175 54.3
Os10g0555100 Oryza sativa ssp. japonica HOM05D003437 ORTHO05D004070 2.4e-42 176.0 177 52.0
CAN.G62.44 Capsicum annuum HOM05D003437 ORTHO05D004070 3.2e-42 175.6 159 57.2
Gohir.A12G217200 Gossypium hirsutum HOM05D003437 ORTHO05D004070 3.2e-42 175.6 176 52.3
HPP92_003451 Vanilla planifolia HOM05D003437 ORTHO05D004070 4.2e-42 175.3 177 52.0
RcHm_v2.0_Chr7g0203241 Rosa chinensis HOM05D003437 ORTHO05D004070 5.5e-42 174.9 161 55.9
Gorai.008G235400 Gossypium raimondii HOM05D003437 ORTHO05D004070 7.1e-42 174.5 176 51.7
SGA_v2.0_scaffold146G36150 Striga asiatica HOM05D003437 ORTHO05D004070 7.1e-42 174.5 164 53.0
Hund14536 Selenicereus undatus HOM05D003437 ORTHO05D004070 1.2e-41 173.7 177 53.7
Gohir.D12G219700 Gossypium hirsutum HOM05D003437 ORTHO05D004070 2.7e-41 172.6 176 51.1
Ah.02g116730 Amaranthus hybridus HOM05D003437 ORTHO05D004070 1.0e-40 170.6 178 52.8
DCAR_027774 Daucus carota HOM05D003437 ORTHO05D004070 1.9e-39 166.4 176 48.9
Gorai.004G198800 Gossypium raimondii HOM05D003437 ORTHO05D004070 7.4e-39 164.5 163 53.4
Gohir.D08G188766 Gossypium hirsutum HOM05D003437 ORTHO05D004070 3.7e-38 162.2 163 53.4
ECA232G3118 Erigeron canadensis HOM05D003437 ORTHO05D004070 5.3e-37 158.3 152 55.3
Ah.12g056820 Amaranthus hybridus HOM05D003437 ORTHO05D004070 8.4e-35 151.0 141 56.7
Gohir.A08G170566 Gossypium hirsutum HOM05D003437 ORTHO05D004070 2.5e-34 149.4 159 50.9
ClCG10G002700 Citrullus lanatus HOM05D003437 ORTHO05D004070 4.6e-33 145.2 174 47.7
Sed0009249 Sechium edule HOM05D003437 ORTHO05D004070 1.0e-32 144.1 173 49.1
Lsat_1_v5_gn_3_138880 Lactuca sativa HOM05D003437 ORTHO05D004070 3.0e-32 142.5 190 48.9
MELO3C013941.2 Cucumis melo HOM05D003437 ORTHO05D004070 9.7e-31 137.5 173 46.8
CsaV3_3G002730 Cucumis sativus L. HOM05D003437 ORTHO05D004070 2.8e-30 136.0 150 50.7
unitig_21.g20536 Utricularia gibba HOM05D003437 ORTHO05D004070 2.9e-27 125.9 151 46.4
SEGI_08661 Sequoiadendron giganteum HOM05D003437 ORTHO05D004070 5.0e-27 125.2 180 41.7
SEGI_32290 Sequoiadendron giganteum HOM05D003437 ORTHO05D004070 6.5e-27 124.8 180 42.2
SEGI_02778 Sequoiadendron giganteum HOM05D003437 ORTHO05D004070 1.9e-26 123.2 178 37.6
Lj6A70T56 Lonicera japonica HOM05D003437 ORTHO05D004070 7.9e-25 117.9 86 70.9
Mapoly0066s0014 Marchantia polymorpha HOM05D003437 ORTHO05D004070 3.9e-24 115.5 170 37.6
HPP92_028332 Vanilla planifolia HOM05D003437 ORTHO05D004070 5.3e-21 105.1 99 56.6
Actinidia02134 Actinidia chinensis HOM05D003437 ORTHO05D004070 2.9e-19 99.4 79 62.0
SMO367G1194 Selaginella moellendorffii HOM05D003437 ORTHO05D004070 3.8e-19 99.0 169 36.1
Pp3c3_18090 Physcomitrium patens HOM05D003437 ORTHO05D004070 1.2e-17 94.0 186 32.8
Pp3c26_7880 Physcomitrium patens HOM05D003437 ORTHO05D004070 5.1e-16 88.6 182 30.2
Pp3c13_12560 Physcomitrium patens HOM05D003437 ORTHO05D004070 2.6e-15 86.3 186 31.2
Pp3c9_13380 Physcomitrium patens HOM05D003437 ORTHO05D004070 3.8e-11 72.4 98 36.7


User provided reference genes

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