Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 6.5e-293 1010.0 510 100.0
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 1.6e-278 962.2 511 94.5
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 1.6e-278 962.2 511 94.5
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 1.0e-274 949.5 511 93.2
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 5.2e-274 947.2 507 94.3
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 2.0e-273 945.3 511 93.0
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 6.8e-266 920.2 510 88.2
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 7.8e-254 880.2 509 84.1
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 2.4e-247 858.6 510 83.1
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 2.3e-245 852.0 509 82.1
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 8.4e-240 833.6 509 81.5
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 1.1e-220 770.0 508 75.0
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 2.1e-219 765.8 508 73.2
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 4.6e-206 721.5 513 71.5
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 3.5e-177 625.5 506 62.6
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 4.5e-177 625.2 509 59.9
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 3.2e-175 619.0 508 62.0
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 3.2e-175 619.0 507 60.6
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 8.0e-174 614.4 507 60.0
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 4.0e-173 612.1 512 62.5
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 4.0e-173 612.1 510 61.2
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 5.2e-173 611.7 509 61.1
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 5.7e-172 608.2 469 62.3
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 9.8e-172 607.4 510 59.0
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 1.3e-171 607.1 509 58.7
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 2.2e-171 606.3 515 58.1
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 2.2e-171 606.3 504 60.3
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 2.4e-170 602.8 467 64.2
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 5.4e-170 601.7 503 61.2
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 9.1e-170 600.9 496 60.5
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 9.1e-170 600.9 504 59.7
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 1.2e-169 600.5 504 59.9
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 4.5e-169 598.6 492 62.0
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 1.1e-167 594.0 508 60.0
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 3.6e-166 589.0 509 57.2
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 1.0e-165 587.4 491 61.9
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 1.2e-164 583.9 499 59.7
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 4.4e-164 582.0 429 65.3
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 1.7e-163 580.1 504 59.1
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 9.2e-162 574.3 498 60.8
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.2e-161 573.9 495 60.4
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 2.7e-161 572.8 505 58.0
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 4.5e-161 572.0 429 66.4
COL.COLO4_37119 Corchorus olitorius HOM05D005741 ORTHO05D007240 1.3e-160 570.5 405 66.7
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.9e-159 566.6 429 66.0
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 4.3e-159 565.5 429 65.7
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.2e-158 563.9 495 59.6
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 3.6e-158 562.4 440 62.5
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 8.0e-158 561.2 490 57.1
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 1.0e-157 560.8 462 59.3
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 1.4e-157 560.5 489 57.9
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 3.0e-157 559.3 491 59.1
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 4.0e-157 558.9 483 59.2
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 4.0e-157 558.9 502 57.8
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 5.2e-157 558.5 490 58.0
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 5.2e-157 558.5 502 58.6
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 8.9e-157 557.8 484 59.1
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 8.9e-157 557.8 502 58.2
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 2.0e-156 556.6 494 58.5
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 4.4e-156 555.4 487 58.9
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 5.7e-156 555.1 501 56.5
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 7.5e-156 554.7 494 57.5
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 1.3e-155 553.9 429 64.1
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 1.7e-155 553.5 481 58.6
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 2.2e-155 553.1 496 57.7
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 4.1e-154 548.9 424 63.4
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 2.0e-153 546.6 494 57.9
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 2.0e-153 546.6 479 57.6
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 3.5e-153 545.8 464 59.1
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 8.6e-152 541.2 535 53.6
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 7.3e-151 538.1 429 62.0
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 7.3e-151 538.1 473 57.9
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 7.3e-151 538.1 495 57.8
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 1.2e-150 537.3 492 54.3
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 1.6e-150 537.0 440 58.4
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 6.2e-150 535.0 486 56.0
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 2.3e-149 533.1 492 55.7
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 8.9e-149 531.2 469 55.9
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 2.0e-148 530.0 494 55.9
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 5.8e-148 528.5 469 55.2
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 1.3e-147 527.3 489 55.6
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 2.2e-147 526.6 495 55.2
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 6.4e-147 525.0 499 55.5
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 6.4e-147 525.0 509 53.6
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 3.2e-146 522.7 512 54.1
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 2.7e-145 519.6 486 55.3
TAR629G0196 Trochodendron aralioides HOM05D005741 ORTHO05D007240 2.3e-141 506.5 405 62.2
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 1.2e-140 504.2 505 51.5
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 3.4e-140 502.7 499 52.9
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 1.3e-139 500.7 464 56.2
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 2.9e-139 499.6 515 52.6
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 6.4e-139 498.4 502 52.0
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 1.6e-137 493.8 518 50.8
Gohir.A03G006700 Gossypium hirsutum HOM05D005741 ORTHO05D007240 7.3e-135 485.0 386 63.2
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 9.5e-135 484.6 481 53.0
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 2.1e-134 483.4 488 50.6
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 6.8e-133 478.4 473 53.1
AUR62042169 Chenopodium quinoa HOM05D005741 ORTHO05D007240 4.9e-131 472.2 403 58.1
AUR62022412 Chenopodium quinoa HOM05D005741 ORTHO05D007240 1.1e-130 471.1 403 57.8
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 1.1e-127 461.1 469 53.1
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 6.2e-126 455.3 469 52.7
ECA233G5769 Erigeron canadensis HOM05D000263 ORTHO05D000213 1.1e-125 454.5 412 55.6
TAR365G0013 Trochodendron aralioides HOM05D005741 ORTHO05D007240 5.4e-122 442.2 347 63.1
CSS0035552 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.7e-120 437.2 343 64.4
Aa31LG6G180 Aethionema arabicum HOM05D005741 ORTHO05D007240 3.0e-120 436.4 321 68.5
Dinv03497 Davidia involucrata HOM05D005741 ORTHO05D007240 1.1e-119 434.5 348 60.9
Hma1.2p1_1136F.1_g260550 Hydrangea macrophylla HOM05D005741 ORTHO05D007240 1.6e-118 430.6 349 59.6
Oeu036348.1 Olea europaea HOM05D005741 ORTHO05D007240 2.2e-115 420.2 348 58.3
Cc11_g11020 Coffea canephora HOM05D005741 ORTHO05D007240 2.9e-99 366.7 291 61.5
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 1.0e-91 341.7 526 39.7
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 4.7e-81 306.2 426 41.3
Dinv39172 Davidia involucrata HOM05D005741 ORTHO05D007240 1.7e-78 297.7 223 64.6
QL05p056282 Quercus lobata HOM05D005741 ORTHO05D007240 2.9e-75 287.0 405 42.0
QL05p056380 Quercus lobata HOM05D005741 ORTHO05D007240 5.3e-69 266.2 254 54.7
QL05p056241 Quercus lobata HOM05D005741 ORTHO05D007240 2.2e-67 260.8 202 65.8
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 6.5e-67 259.2 539 32.8
MD06G1054000 Malus domestica HOM05D005741 ORTHO05D007240 8.5e-67 258.8 205 62.4
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 2.6e-63 247.3 423 37.6
Glyma.19G032167 Glycine max HOM05D005741 ORTHO05D007240 7.0e-53 212.6 186 55.9
CSS0043083 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.3e-48 197.6 167 59.3
Sed0012710 Sechium edule HOM05D005741 ORTHO05D007240 2.0e-47 194.5 334 38.3
Mapoly0048s0017 Marchantia polymorpha HOM05D005741 ORTHO05D007240 5.4e-45 186.4 509 29.3
Glyma.19G032233 Glycine max HOM05D005741 ORTHO05D007240 4.9e-38 163.3 160 54.4
Actinidia14404 Actinidia chinensis HOM05D005741 ORTHO05D007240 9.5e-34 149.1 339 31.9
Pp3c6_17590 Physcomitrium patens HOM05D005741 ORTHO05D007240 6.2e-33 146.4 240 35.4
vmacro00011 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 6.8e-32 142.9 276 36.2
vmacro00009 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 3.4e-31 140.6 199 41.2
CSS0012087 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.7e-30 138.3 116 59.5
CSS0007358 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.2e-30 137.9 117 59.8
CSS0008948 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.1e-29 135.6 109 61.5
Aa31LG6G170 Aethionema arabicum HOM05D005741 ORTHO05D007240 3.9e-27 127.1 111 58.6
Pp3c6_17579 Physcomitrium patens HOM05D005741 ORTHO05D007240 4.1e-21 107.1 157 44.6
Oeu057691.1 Olea europaea HOM05D005741 ORTHO05D007240 1.6e-17 95.1 75 62.7
Hma1.2p1_2773F.1_g328260 Hydrangea macrophylla HOM05D005741 ORTHO05D228475 5.8e-15 86.7 84 50.0
AL7G37230 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 9.9e-15 85.9 51 80.4


User provided reference genes

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