Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 2.6e-89 332.0 166 100.0
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 6.0e-78 294.3 166 91.6
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 1.7e-77 292.7 166 91.6
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 5.0e-77 291.2 166 91.0
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 1.9e-76 289.3 166 90.4
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 9.5e-76 287.0 166 89.2
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 9.8e-73 276.9 167 87.4
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 8.3e-72 273.9 166 86.1
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 1.7e-64 249.6 167 79.0
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 2.9e-64 248.8 166 76.5
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 4.9e-64 248.1 166 78.3
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.9e-63 246.1 166 77.7
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 1.8e-50 203.0 173 67.1
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 4.9e-48 194.9 160 67.5
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 8.4e-48 194.1 158 67.1
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 3.2e-47 192.2 157 66.2
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 4.6e-46 188.3 157 66.2
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 4.6e-46 188.3 157 66.2
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 4.6e-46 188.3 157 65.6
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 7.8e-46 187.6 159 66.0
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 2.3e-45 186.0 158 66.5
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 6.6e-45 184.5 158 65.8
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 9.6e-44 180.6 166 61.4
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 3.1e-42 175.6 154 63.0
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 9.0e-42 174.1 154 62.3
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 9.0e-42 174.1 154 62.3
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 3.4e-41 172.2 153 61.4
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 2.1e-38 162.9 154 60.4
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 2.7e-38 162.5 176 52.3
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 6.0e-38 161.4 153 59.5
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 6.0e-38 161.4 163 53.4
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.0e-37 160.6 167 53.3
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.0e-37 160.6 162 52.5
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 5.1e-37 158.3 158 55.7
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 8.7e-37 157.5 121 70.2
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 1.3e-35 153.7 161 50.9
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.6e-35 153.3 166 57.2
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 2.8e-35 152.5 169 52.1
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 3.7e-35 152.1 161 50.9
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 3.7e-35 152.1 169 52.7
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 6.2e-35 151.4 170 50.6
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 1.1e-34 150.6 167 49.1
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 1.4e-34 150.2 170 51.2
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 2.4e-34 149.4 167 48.5
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 3.1e-34 149.1 170 52.9
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 5.3e-34 148.3 167 52.1
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 6.9e-34 147.9 176 50.6
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 1.5e-33 146.7 166 48.8
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 1.5e-33 146.7 168 51.8
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.5e-33 146.7 168 52.4
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 2.0e-33 146.4 166 47.0
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 4.5e-33 145.2 170 49.4
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 4.5e-33 145.2 166 48.2
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 7.6e-33 144.4 166 48.2
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 1.0e-32 144.1 162 51.9
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 1.3e-32 143.7 167 49.7
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 1.3e-32 143.7 167 49.7
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 6.5e-32 141.4 171 48.5
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 8.4e-32 141.0 167 48.5
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 8.4e-32 141.0 167 48.5
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 8.4e-32 141.0 166 47.0
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 8.4e-32 141.0 169 46.2
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.5e-31 139.4 166 46.4
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 3.2e-31 139.0 164 47.6
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 4.2e-31 138.7 167 49.1
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 5.5e-31 138.3 166 50.0
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 1.6e-30 136.7 166 46.4
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.1e-30 136.3 166 45.8
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 2.7e-30 136.0 202 43.6
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 3.5e-30 135.6 168 43.5
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 4.6e-30 135.2 164 46.3
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 6.0e-30 134.8 168 45.8
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 1.3e-29 133.7 168 47.0
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.8e-29 133.3 165 46.7
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.3e-29 132.9 166 45.2
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 2.3e-29 132.9 174 44.3
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 3.0e-29 132.5 173 46.2
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 3.0e-29 132.5 165 46.7
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 3.9e-29 132.1 168 46.4
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 3.9e-29 132.1 167 45.5
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 5.1e-29 131.7 167 48.5
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 5.1e-29 131.7 168 45.8
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 6.7e-29 131.3 168 50.0
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 8.7e-29 131.0 167 46.1
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.1e-28 130.6 168 48.8
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 1.1e-28 130.6 165 46.7
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 1.1e-28 130.6 162 45.7
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 1.1e-28 130.6 166 44.6
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 1.3e-27 127.1 162 45.7
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.1e-27 126.3 167 45.5
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 8.2e-27 124.4 166 45.2
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 1.1e-26 124.0 166 44.0
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.4e-26 123.6 168 46.4
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 2.4e-26 122.9 81 77.8
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 4.0e-26 122.1 164 45.7
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 5.3e-26 121.7 166 45.8
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 5.3e-26 121.7 276 33.7
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 6.9e-26 121.3 171 45.0
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 1.2e-25 120.6 223 35.9
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.5e-25 120.2 164 45.7
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 2.0e-25 119.8 170 44.1
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 2.0e-25 119.8 155 43.9
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 2.6e-25 119.4 167 43.7
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 2.6e-25 119.4 166 42.2
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 2.6e-25 119.4 166 42.2
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 5.8e-25 118.2 173 41.6
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 1.0e-24 117.5 196 38.8
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 1.3e-24 117.1 160 41.2
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.7e-24 116.7 169 45.0
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 1.7e-24 116.7 168 44.0
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.7e-24 116.7 166 42.2
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 2.2e-24 116.3 162 42.0
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 2.2e-24 116.3 162 44.4
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 3.8e-24 115.5 166 44.6
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 5.0e-24 115.2 165 42.4
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 5.0e-24 115.2 164 43.9
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 8.4e-24 114.4 166 40.4
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.1e-23 114.0 165 41.2
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 1.1e-23 114.0 166 44.0
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 1.9e-23 113.2 166 44.0
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 1.9e-23 113.2 165 43.6
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 4.2e-23 112.1 197 37.1
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 9.3e-23 110.9 251 33.9
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 9.3e-23 110.9 159 42.8
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 1.6e-22 110.2 164 41.5
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 2.1e-22 109.8 171 44.4
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 2.7e-22 109.4 142 45.8
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 3.5e-22 109.0 149 42.3
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 3.5e-22 109.0 111 48.6
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.3e-21 107.1 113 53.1
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 5.1e-21 105.1 166 39.2
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 1.5e-20 103.6 226 33.6
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 1.9e-20 103.2 168 40.5
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 2.5e-20 102.8 210 36.2
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 4.3e-20 102.1 162 40.7
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 7.4e-20 101.3 184 37.0
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 1.6e-19 100.1 167 42.5
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 8.2e-19 97.8 170 40.0
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 4.1e-18 95.5 165 39.4
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 1.5e-17 93.6 174 36.2
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 5.5e-15 85.1 83 50.6
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 9.4e-15 84.3 156 35.3
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 1.2e-14 84.0 88 47.7
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 6.1e-14 81.6 171 35.1
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 5.1e-13 78.6 79 53.2
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 3.3e-12 75.9 78 47.4
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 5.7e-12 75.1 122 38.5
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 7.4e-12 74.7 87 43.7
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 9.7e-12 74.3 80 50.0
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 9.7e-12 74.3 76 50.0
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 1.3e-11 73.9 88 46.6
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 1.7e-11 73.6 87 43.7
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 4.1e-10 68.9 100 41.0
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 9.1e-10 67.8 148 37.2
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.5e-09 67.0 96 40.6
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 1.1e-07 60.8 151 33.1
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.2e-06 57.4 82 40.2


User provided reference genes

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