Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 5.2e-51 204.1 107 100.0
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 9.2e-40 166.8 107 86.9
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 2.1e-39 165.6 107 86.9
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 1.1e-37 159.8 107 85.0
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 5.6e-37 157.5 107 82.2
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 3.4e-34 148.3 107 76.6
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 3.4e-34 148.3 108 79.6
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 6.0e-31 137.5 107 70.1
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 3.0e-30 135.2 106 72.6
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 1.3e-28 129.8 106 69.8
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 2.8e-28 128.6 104 68.3
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.1e-27 126.7 104 68.3
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 1.1e-27 126.7 90 80.0
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 3.4e-26 121.7 104 67.3
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 3.2e-24 115.2 106 65.1
A03p65180 Brassica napus HOM05D007568 ORTHO05D009779 1.2e-23 113.2 75 85.3
A07p04740 Brassica napus HOM05D004264 ORTHO05D004680 1.6e-23 112.8 75 85.3
BraA07t28261Z Brassica rapa HOM05D004264 ORTHO05D004680 1.6e-23 112.8 75 85.3
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 1.6e-23 112.8 103 65.0
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 3.5e-23 111.7 106 61.3
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 3.5e-23 111.7 106 61.3
BolC9t57329H Brassica oleracea HOM05D004264 ORTHO05D004680 1.0e-22 110.2 75 81.3
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 3.0e-22 108.6 106 60.4
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 5.6e-21 104.4 104 51.9
A02p28890 Brassica napus HOM05D004264 ORTHO05D004680 7.4e-21 104.0 75 77.3
BraA07t28331Z Brassica rapa HOM05D004264 ORTHO05D004680 7.4e-21 104.0 77 74.0
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 1.6e-20 102.8 101 54.5
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 3.7e-20 101.7 106 57.5
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 4.0e-19 98.2 104 50.0
A06p35970 Brassica napus HOM05D004264 ORTHO05D004680 9.0e-19 97.1 105 59.0
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.3e-17 93.2 96 52.1
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 3.8e-17 91.7 99 52.5
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 4.2e-16 88.2 92 59.8
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 4.2e-16 88.2 92 59.8
A05p35200 Brassica napus HOM05D004264 ORTHO05D004680 4.2e-16 88.2 50 96.0
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 4.2e-16 88.2 109 49.5
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 8.7e-14 80.5 109 44.0
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 4.3e-13 78.2 110 43.6
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 9.6e-13 77.0 101 45.5
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 2.1e-12 75.9 105 41.9
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 3.7e-12 75.1 101 40.6
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 3.7e-12 75.1 105 42.9
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 6.2e-12 74.3 110 43.6
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 8.2e-12 73.9 98 42.9
C09p21940 Brassica napus HOM05D004264 ORTHO05D004680 1.8e-11 72.8 42 95.2
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 2.4e-11 72.4 104 41.3
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 2.4e-11 72.4 110 43.6
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 1.2e-10 70.1 103 38.8
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 1.5e-10 69.7 108 38.0
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 2.0e-10 69.3 109 42.2
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 2.0e-10 69.3 109 41.3
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 2.0e-10 69.3 109 41.3
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 2.6e-10 68.9 101 38.6
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 4.5e-10 68.2 109 36.7
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 7.6e-10 67.4 110 37.3
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.7e-09 66.2 110 40.0
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 2.2e-09 65.9 109 38.5
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 4.9e-09 64.7 103 35.9
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 6.5e-09 64.3 110 39.1
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 6.5e-09 64.3 109 39.4
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.4e-08 63.2 110 39.1
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 1.4e-08 63.2 102 34.3
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 1.9e-08 62.8 102 39.2
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.9e-08 62.8 106 39.6
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 1.9e-08 62.8 107 36.4
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 4.2e-08 61.6 109 35.8
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 4.2e-08 61.6 109 39.4
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 5.5e-08 61.2 109 35.8
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 7.1e-08 60.8 104 38.5
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 9.3e-08 60.5 102 38.2
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 9.3e-08 60.5 110 38.2
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 9.3e-08 60.5 109 34.9
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 1.2e-07 60.1 99 37.4
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 1.2e-07 60.1 109 36.7
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 1.2e-07 60.1 109 37.6
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 1.6e-07 59.7 109 34.9
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 2.1e-07 59.3 106 37.7
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.7e-07 58.9 103 37.9
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 2.7e-07 58.9 102 39.2
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 3.5e-07 58.5 109 35.8
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 4.6e-07 58.2 97 38.1
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 4.6e-07 58.2 101 35.6
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 6.0e-07 57.8 103 36.9
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 6.0e-07 57.8 103 36.9
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 6.0e-07 57.8 103 36.9
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 6.0e-07 57.8 110 38.2
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 7.9e-07 57.4 110 35.5
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.8e-06 56.2 109 34.9
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 2.3e-06 55.8 109 35.8
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 2.3e-06 55.8 110 38.2
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 2.3e-06 55.8 110 35.5
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 2.3e-06 55.8 102 33.3
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 3.0e-06 55.5 101 32.7
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 3.0e-06 55.5 101 33.7
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 6.7e-06 54.3 104 32.7
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 6.7e-06 54.3 75 38.7
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 6.7e-06 54.3 110 33.6
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 8.7e-06 53.9 109 35.8
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 8.7e-06 53.9 102 34.3


User provided reference genes

Program Settings