Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52248 Brassica carinata HOM05D002082 ORTHO05D002130 3.1e-102 375.2 197 100.0
BolC4t24685H Brassica oleracea HOM05D002082 ORTHO05D002130 8.0e-90 334.0 191 93.7
C04p31360 Brassica napus HOM05D002082 ORTHO05D002130 1.8e-89 332.8 191 93.2
BcaC02g10221 Brassica carinata HOM05D002082 ORTHO05D002130 7.0e-86 320.9 191 90.6
A04p01130 Brassica napus HOM05D002082 ORTHO05D002130 3.1e-81 305.4 191 85.3
Sp5g02020 Schrenkiella parvula HOM05D002082 ORTHO05D002130 3.5e-69 265.4 197 75.6
BraA04t15829Z Brassica rapa HOM05D002082 ORTHO05D002130 2.3e-68 262.7 194 76.3
Thhalv10005809m.g Eutrema salsugineum HOM05D002082 ORTHO05D002130 9.6e-67 257.3 198 75.3
CARHR171720 Cardamine hirsuta HOM05D002082 ORTHO05D002130 1.4e-57 226.9 187 71.7
BcaNung07022 Brassica carinata HOM05D002082 ORTHO05D002130 1.2e-56 223.8 197 69.5
BcaC07g40635 Brassica carinata HOM05D002082 ORTHO05D002130 2.0e-56 223.0 194 69.6
C08p36240 Brassica napus HOM05D002082 ORTHO05D002130 2.0e-56 223.0 194 69.6
BolC8t51206H Brassica oleracea HOM05D002082 ORTHO05D002130 2.0e-56 223.0 194 69.6
AL5G43660 Arabidopsis lyrata HOM05D002082 ORTHO05D002130 2.5e-51 206.1 187 67.4
Carub.0005s2805 Capsella rubella HOM05D002082 ORTHO05D002130 1.4e-49 200.3 197 62.9
AT3G61380 Arabidopsis thaliana HOM05D002082 ORTHO05D002130 1.1e-46 190.7 188 61.7
A09p53430 Brassica napus HOM05D002082 ORTHO05D002130 3.0e-44 182.6 194 60.3
BraA09t40769Z Brassica rapa HOM05D002082 ORTHO05D002130 3.0e-44 182.6 194 60.3
Aa31LG10G15550 Aethionema arabicum HOM05D002082 ORTHO05D002130 1.5e-43 180.3 195 57.4
AL4G45110 Arabidopsis lyrata HOM05D002082 ORTHO05D002130 3.8e-39 165.6 188 55.9
Thhalv10001338m.g Eutrema salsugineum HOM05D002082 ORTHO05D002130 1.9e-38 163.3 190 55.3
AT2G45900 Arabidopsis thaliana HOM05D002082 ORTHO05D002130 7.9e-37 157.9 188 53.7
A05p05870 Brassica napus HOM05D002082 ORTHO05D002130 7.9e-37 157.9 188 50.5
BraA05t19551Z Brassica rapa HOM05D002082 ORTHO05D002130 1.8e-36 156.8 183 51.9
Sp4g27970 Schrenkiella parvula HOM05D002082 ORTHO05D002130 5.1e-36 155.2 189 52.9
C04p06810 Brassica napus HOM05D002082 ORTHO05D002130 8.7e-36 154.5 190 50.5
BolC4t22303H Brassica oleracea HOM05D002082 ORTHO05D002130 8.7e-36 154.5 161 55.9
THA.LOC104802034 Tarenaya hassleriana HOM05D002082 ORTHO05D002130 8.7e-36 154.5 163 54.6
CARHR141180 Cardamine hirsuta HOM05D002082 ORTHO05D002130 1.9e-35 153.3 188 52.1
Carub.0004s2860 Capsella rubella HOM05D002082 ORTHO05D002130 2.8e-34 149.4 188 51.6
Aa31LG1G27340 Aethionema arabicum HOM05D002082 ORTHO05D002130 1.8e-28 130.2 211 43.1
A04p34120 Brassica napus HOM05D002082 ORTHO05D002130 3.0e-28 129.4 182 48.4
BraA04t18873Z Brassica rapa HOM05D002082 ORTHO05D002130 3.0e-28 129.4 183 47.5
C04p71920 Brassica napus HOM05D002082 ORTHO05D002130 8.8e-28 127.9 183 46.4
BolC4t28690H Brassica oleracea HOM05D002082 ORTHO05D002130 2.2e-26 123.2 183 45.4
BcaC02g07066 Brassica carinata HOM05D002082 ORTHO05D002130 1.1e-25 120.9 182 46.2
BcaC02g12169 Brassica carinata HOM05D002082 ORTHO05D002130 1.5e-24 117.1 168 46.4
Thecc.04G199500 Theobroma cacao HOM05D002082 ORTHO05D002130 1.3e-18 97.4 188 41.5
Atru.chr5.499 Acer truncatum HOM05D002082 ORTHO05D002130 3.7e-18 95.9 177 39.5
Gohir.D02G113800 Gossypium hirsutum HOM05D002082 ORTHO05D002130 3.7e-18 95.9 176 40.9
COL.COLO4_20185 Corchorus olitorius HOM05D002082 ORTHO05D002130 8.2e-18 94.7 185 42.2
Duzib212G0601 Durio zibethinus HOM05D002082 ORTHO05D002130 1.4e-17 94.0 179 40.2
Gohir.D09G199500 Gossypium hirsutum HOM05D002082 ORTHO05D002130 1.8e-17 93.6 185 40.0
Gorai.006G223200 Gossypium raimondii HOM05D002082 ORTHO05D002130 1.8e-17 93.6 185 40.0
CANSAT56G1625 Cannabis sativa HOM05D002082 ORTHO05D002130 5.3e-17 92.0 188 38.8
MD07G1136900 Malus domestica HOM05D002082 ORTHO05D002130 1.2e-16 90.9 178 34.3
Gorai.005G129500 Gossypium raimondii HOM05D002082 ORTHO05D002130 1.5e-16 90.5 176 39.8
Cfa003924 Carpinus fangiana HOM05D002082 ORTHO05D002130 2.0e-16 90.1 174 37.9
Gohir.A09G205900 Gossypium hirsutum HOM05D002082 ORTHO05D002130 3.5e-16 89.4 176 39.8
Gohir.A03G095500 Gossypium hirsutum HOM05D002082 ORTHO05D002130 1.3e-15 87.4 176 39.2
THA.LOC104825840 Tarenaya hassleriana HOM05D002082 ORTHO05D002130 1.3e-15 87.4 193 37.8
Prupe.2G170700 Prunus persica HOM05D002082 ORTHO05D002130 5.0e-15 85.5 172 38.4
Haze_15507 Corylus avellana HOM05D002082 ORTHO05D002130 8.5e-15 84.7 175 38.9
MD01G1060800 Malus domestica HOM05D002082 ORTHO05D002130 8.5e-15 84.7 175 34.9
Duzib268G0073 Durio zibethinus HOM05D002082 ORTHO05D002130 1.5e-14 84.0 177 39.0
CiPaw.01G061400 Carya illinoinensis HOM05D002082 ORTHO05D002130 1.9e-14 83.6 192 37.0
ECA236G0021 Erigeron canadensis HOM05D002082 ORTHO05D002130 2.5e-14 83.2 199 35.7
Sp6g00480 Schrenkiella parvula HOM05D002082 ORTHO05D002130 2.5e-14 83.2 165 35.8
BcaB01g02250 Brassica carinata HOM05D002082 ORTHO05D002130 4.2e-14 82.4 178 36.0
AT4G00440 Arabidopsis thaliana HOM05D002082 ORTHO05D002130 5.5e-14 82.0 160 38.1
Potri.014G084600 Populus trichocarpa HOM05D002082 ORTHO05D002130 5.5e-14 82.0 173 33.5
Gohir.A02G020600 Gossypium hirsutum HOM05D002082 ORTHO05D002130 7.2e-14 81.6 193 35.2
Gohir.A08G013780 Gossypium hirsutum HOM05D002082 ORTHO05D002130 7.2e-14 81.6 193 35.2
Potri.002G160000 Populus trichocarpa HOM05D002082 ORTHO05D002130 7.2e-14 81.6 141 36.2
TWI14G1346 Tripterygium wilfordii HOM05D002082 ORTHO05D002130 1.2e-13 80.9 190 36.3
CiPaw.02G031000 Carya illinoinensis HOM05D002082 ORTHO05D002130 2.1e-13 80.1 169 36.1
FAN10G2676 Fragaria x ananassa HOM05D002082 ORTHO05D002130 2.7e-13 79.7 181 34.8
HanXRQChr16g0522751 Helianthus annuus HOM05D002082 ORTHO05D002130 2.7e-13 79.7 149 38.9
Sabra02G0127000 Salix brachista HOM05D002082 ORTHO05D002130 2.7e-13 79.7 112 40.2
FAN10G2557 Fragaria x ananassa HOM05D002082 ORTHO05D002130 3.6e-13 79.3 185 34.6
THA.LOC104801437 Tarenaya hassleriana HOM05D002082 ORTHO05D002130 4.7e-13 79.0 191 34.0
Thhalv10028418m.g Eutrema salsugineum HOM05D002082 ORTHO05D002130 6.1e-13 78.6 178 35.4
FAN03G3385 Fragaria x ananassa HOM05D002082 ORTHO05D002130 6.1e-13 78.6 181 34.3
Gohir.D02G024600 Gossypium hirsutum HOM05D002082 ORTHO05D002130 6.1e-13 78.6 193 35.2
Gorai.005G030500 Gossypium raimondii HOM05D002082 ORTHO05D002130 8.0e-13 78.2 193 34.7
CARHR248540 Cardamine hirsuta HOM05D002082 ORTHO05D002130 1.0e-12 77.8 178 39.3
Eucgr.D02291 Eucalyptus grandis HOM05D002082 ORTHO05D002130 1.4e-12 77.4 191 34.6
FvH4_7g14290 Fragaria vesca HOM05D002082 ORTHO05D002130 1.8e-12 77.0 181 34.3
FAN06G2330 Fragaria x ananassa HOM05D002082 ORTHO05D002130 1.8e-12 77.0 181 34.3
FAN06G4139 Fragaria x ananassa HOM05D002082 ORTHO05D002130 1.8e-12 77.0 181 34.3
AL6G53020 Arabidopsis lyrata HOM05D002082 ORTHO05D002130 3.0e-12 76.3 180 35.6
Aa31LG5G540 Aethionema arabicum HOM05D002082 ORTHO05D002130 3.9e-12 75.9 183 35.5
BcaC04g24170 Brassica carinata HOM05D002082 ORTHO05D002130 3.9e-12 75.9 167 32.3
BcaC04g24174 Brassica carinata HOM05D002082 ORTHO05D002130 3.9e-12 75.9 167 32.3
C09p00380 Brassica napus HOM05D002082 ORTHO05D002130 3.9e-12 75.9 167 32.3
FAN01G1477 Fragaria x ananassa HOM05D002082 ORTHO05D002130 3.9e-12 75.9 181 33.7
Carub.0006s3682 Capsella rubella HOM05D002082 ORTHO05D002130 6.7e-12 75.1 116 37.9
Ciclev10018716m.g Citrus clementina HOM05D002082 ORTHO05D002130 1.1e-11 74.3 176 36.4
A09p00480 Brassica napus HOM05D002082 ORTHO05D002130 1.5e-11 73.9 143 35.7
Sabra14G0061400 Salix brachista HOM05D002082 ORTHO05D002130 1.5e-11 73.9 179 32.4
RcHm_v2.0_Chr1g0355281 Rosa chinensis HOM05D002082 ORTHO05D002130 3.3e-11 72.8 192 33.9
TPR.G10305 Trifolium pratense HOM05D002082 ORTHO05D002130 4.4e-11 72.4 137 37.2
BcaB01g02165 Brassica carinata HOM05D002082 ORTHO05D002130 7.4e-11 71.6 153 37.3
Rhsim07G0014800 Rhododendron simsii HOM05D002082 ORTHO05D002130 9.7e-11 71.2 175 34.9
BolC9t52973H Brassica oleracea HOM05D002082 ORTHO05D002130 1.3e-10 70.9 176 33.0
MELO3C006109.2 Cucumis melo HOM05D002082 ORTHO05D002130 1.7e-10 70.5 129 37.2
BraA09t35712Z Brassica rapa HOM05D002082 ORTHO05D002130 2.8e-10 69.7 176 32.4
DCAR_006930 Daucus carota HOM05D002082 ORTHO05D002130 2.8e-10 69.7 179 32.4
Dinv43817 Davidia involucrata HOM05D002082 ORTHO05D002130 2.8e-10 69.7 182 36.3
Glyma.18G233100 Glycine max HOM05D002082 ORTHO05D002130 3.7e-10 69.3 159 32.7
BcaC01g06880 Brassica carinata HOM05D002082 ORTHO05D002130 6.3e-10 68.6 145 32.4
TWI23G1246 Tripterygium wilfordii HOM05D002082 ORTHO05D002130 6.3e-10 68.6 152 34.2
TAR636G0944 Trochodendron aralioides HOM05D002082 ORTHO05D002130 6.3e-10 68.6 135 37.8
Actinidia33420 Actinidia chinensis HOM05D002082 ORTHO05D002130 8.2e-10 68.2 156 35.9
Actinidia10009 Actinidia chinensis HOM05D002082 ORTHO05D002130 1.1e-09 67.8 163 35.6
CsaV3_3G008900 Cucumis sativus L. HOM05D002082 ORTHO05D002130 1.1e-09 67.8 126 37.3
Lsat_1_v5_gn_4_36100 Lactuca sativa HOM05D002082 ORTHO05D002130 1.4e-09 67.4 176 34.7
PGR031G0369 Punica granatum HOM05D002082 ORTHO05D002130 1.4e-09 67.4 155 34.8
C03p39220 Brassica napus HOM05D002082 ORTHO05D002130 1.8e-09 67.0 144 31.9
BolC3t16193H Brassica oleracea HOM05D002082 ORTHO05D002130 1.8e-09 67.0 144 31.9
Nitab4.5_0000583g0100 Nicotiana tabacum HOM05D002082 ORTHO05D002130 1.8e-09 67.0 184 35.9
A03p32190 Brassica napus HOM05D002082 ORTHO05D002130 2.4e-09 66.6 144 31.9
Lsat_1_v5_gn_3_137221 Lactuca sativa HOM05D002082 ORTHO05D002130 2.4e-09 66.6 92 42.4
Ca_07921_v3 Cicer arietinum L. HOM05D002082 ORTHO05D002130 3.1e-09 66.2 181 31.5
Lj7A512T28 Lonicera japonica HOM05D002082 ORTHO05D002130 3.1e-09 66.2 174 35.6
QL08p048793 Quercus lobata HOM05D002082 ORTHO05D002130 3.1e-09 66.2 170 31.2
MSTRG.20834 Avicennia marina HOM05D002082 ORTHO05D002130 4.1e-09 65.9 126 38.1
ClCG05G001520 Citrullus lanatus HOM05D002082 ORTHO05D002130 4.1e-09 65.9 126 37.3
Manes.01G256600 Manihot esculenta HOM05D002082 ORTHO05D002130 4.1e-09 65.9 182 34.1
MSTRG.17269 Avicennia marina HOM05D002082 ORTHO05D002130 5.3e-09 65.5 189 31.7
vmacro20942 Vaccinium macrocarpon HOM05D002082 ORTHO05D002130 5.3e-09 65.5 166 34.9
ECA234G4153 Erigeron canadensis HOM05D002082 ORTHO05D002130 7.0e-09 65.1 180 34.4
Psat4g155680 Pisum sativum HOM05D002082 ORTHO05D002130 7.0e-09 65.1 168 32.7
PGSC0003DMG400000172 Solanum tuberosum HOM05D002082 ORTHO05D002130 7.0e-09 65.1 195 31.8
BraA03t12389Z Brassica rapa HOM05D002082 ORTHO05D002130 9.1e-09 64.7 145 33.8
Cpa.g.sc11.4 Carica papaya HOM05D002082 ORTHO05D002130 1.2e-08 64.3 73 42.5
Medtr7g077740 Medicago truncatula HOM05D002082 ORTHO05D002130 1.2e-08 64.3 159 32.7
Medtr8g030750 Medicago truncatula HOM05D002082 ORTHO05D002130 1.2e-08 64.3 193 29.5
Phvul.008G062300 Phaseolus vulgaris HOM05D002082 ORTHO05D002130 1.6e-08 63.9 151 33.1
Psat3g108320 Pisum sativum HOM05D002082 ORTHO05D002130 1.6e-08 63.9 162 32.1
Lj3g0021962 Lotus japonicus HOM05D002082 ORTHO05D002130 2.0e-08 63.5 180 30.6
CSS0011549 Camellia sinensis var. sinensis HOM05D002082 ORTHO05D002130 2.6e-08 63.2 152 34.2
arahy.Tifrunner.gnm1.ann1.7UV203 Arachis hypogaea HOM05D002082 ORTHO05D002130 3.5e-08 62.8 132 37.9
arahy.Tifrunner.gnm1.ann1.XE9T79 Arachis hypogaea HOM05D002082 ORTHO05D002130 3.5e-08 62.8 132 37.9
Lsat_1_v5_gn_7_4721 Lactuca sativa HOM05D002082 ORTHO05D002130 3.5e-08 62.8 192 33.3
Manes.05G034100 Manihot esculenta HOM05D002082 ORTHO05D002130 3.5e-08 62.8 182 33.0
Actinidia20902 Actinidia chinensis HOM05D002082 ORTHO05D002130 4.5e-08 62.4 176 34.7
TAR375G0315 Trochodendron aralioides HOM05D002082 ORTHO05D002130 4.5e-08 62.4 161 33.5
Aqoxy7G00305 Aquilegia oxysepala HOM05D002082 ORTHO05D002130 5.9e-08 62.0 127 33.1
Oeu053748.1 Olea europaea HOM05D002082 ORTHO05D002130 5.9e-08 62.0 172 31.4
Hund16922 Selenicereus undatus HOM05D002082 ORTHO05D002130 5.9e-08 62.0 136 36.8
Solyc01g094640.4 Solanum lycopersicum HOM05D002082 ORTHO05D002130 5.9e-08 62.0 196 31.6
Glyma.09G259200 Glycine max HOM05D002082 ORTHO05D002130 7.7e-08 61.6 161 31.1
TAR629G0527 Trochodendron aralioides HOM05D002082 ORTHO05D002130 7.7e-08 61.6 153 35.3
Lalb_Chr04g0256961 Lupinus albus HOM05D002082 ORTHO05D002130 1.0e-07 61.2 181 29.8
Sopen01g038450 Solanum pennellii HOM05D002082 ORTHO05D002130 1.0e-07 61.2 195 30.8
EL10Ac1g00415 Beta vulgaris HOM05D002082 ORTHO05D002130 1.7e-07 60.5 161 31.1
AUR62004359 Chenopodium quinoa HOM05D002082 ORTHO05D002130 1.7e-07 60.5 180 28.9
Cc02_g38040 Coffea canephora HOM05D002082 ORTHO05D002130 1.7e-07 60.5 198 34.3
HanXRQChr04g0121091 Helianthus annuus HOM05D002082 ORTHO05D002130 1.7e-07 60.5 142 33.1
Peaxi162Scf00020g00328 Petunia axillaris HOM05D002082 ORTHO05D002130 1.7e-07 60.5 129 36.4
arahy.Tifrunner.gnm1.ann1.H5386A Arachis hypogaea HOM05D002082 ORTHO05D002130 2.9e-07 59.7 183 32.8
Manes.06G173066 Manihot esculenta HOM05D002082 ORTHO05D002130 2.9e-07 59.7 181 31.5
SGA_v2.0_scaffold95G28833 Striga asiatica HOM05D002082 ORTHO05D002130 2.9e-07 59.7 92 41.3
Dinv37634 Davidia involucrata HOM05D002082 ORTHO05D002130 3.8e-07 59.3 151 31.8
Manes.05G044766 Manihot esculenta HOM05D002082 ORTHO05D002130 3.8e-07 59.3 181 32.0
ECA240G1561 Erigeron canadensis HOM05D000062 ORTHO05D002130 5.0e-07 58.9 178 31.5
Nitab4.5_0006762g0010 Nicotiana tabacum HOM05D002082 ORTHO05D002130 5.0e-07 58.9 210 31.9
DCAR_015992 Daucus carota HOM05D002082 ORTHO05D002130 6.5e-07 58.5 175 29.7
Actinidia12703 Actinidia chinensis HOM05D002082 ORTHO05D002130 1.1e-06 57.8 149 33.6
HanXRQChr06g0170011 Helianthus annuus HOM05D002082 ORTHO05D002130 1.1e-06 57.8 94 40.4
vmacro13276 Vaccinium macrocarpon HOM05D002082 ORTHO05D002130 1.5e-06 57.4 175 31.4
AUR62022567 Chenopodium quinoa HOM05D002082 ORTHO05D002130 1.9e-06 57.0 190 28.9
CSS0003251 Camellia sinensis var. sinensis HOM05D002082 ORTHO05D002130 2.5e-06 56.6 164 34.1
Manes.05G044799 Manihot esculenta HOM05D002082 ORTHO05D002130 2.5e-06 56.6 174 32.8
Sed0023491 Sechium edule HOM05D002082 ORTHO05D002130 2.5e-06 56.6 185 30.8
Migut.B01756 Erythranthe guttata HOM05D002082 ORTHO05D002130 3.2e-06 56.2 188 30.3
PSO478G2816 Papaver somniferum HOM05D002082 ORTHO05D002130 4.2e-06 55.8 186 30.1
PGR042G0971 Punica granatum HOM05D002082 ORTHO05D002130 4.2e-06 55.8 92 41.3
COL.COLO4_34473 Corchorus olitorius HOM05D002082 ORTHO05D002130 5.5e-06 55.5 150 32.7
Migut.A00735 Erythranthe guttata HOM05D002082 ORTHO05D002130 5.5e-06 55.5 107 34.6
Gohir.A12G229800 Gossypium hirsutum HOM05D002082 ORTHO05D002130 9.4e-06 54.7 126 34.1
Lsat_1_v5_gn_6_6641 Lactuca sativa HOM05D002082 ORTHO05D002130 9.4e-06 54.7 177 29.4


User provided reference genes

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