Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 4.1e-234 814.3 401 100.0
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 4.0e-213 744.6 387 95.9
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 2.7e-209 731.9 379 95.3
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 3.3e-191 671.8 382 87.7
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 5.7e-191 671.0 382 88.0
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 3.5e-185 651.7 394 84.3
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 1.2e-153 547.0 402 72.9
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 9.8e-135 484.2 442 61.3
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 6.4e-134 481.5 423 62.6
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 1.7e-131 473.4 441 60.8
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 2.7e-124 449.5 446 56.5
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 5.1e-115 418.7 453 53.6
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 1.5e-90 337.4 386 49.7
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 1.4e-88 330.9 459 43.1
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 2.0e-87 327.0 436 43.8
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 5.8e-87 325.5 398 47.7
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 1.7e-86 323.9 447 43.6
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 2.9e-86 323.2 438 45.4
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 1.9e-85 320.5 419 45.3
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 1.9e-85 320.5 441 43.1
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 2.4e-85 320.1 431 44.1
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 5.5e-85 318.9 431 43.9
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 7.1e-85 318.5 427 45.7
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 1.2e-84 317.8 471 42.7
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 6.0e-84 315.5 428 47.0
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 2.3e-83 313.5 372 47.8
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 3.0e-83 313.2 442 42.8
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 6.7e-83 312.0 395 46.1
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 1.5e-82 310.8 444 43.2
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 2.5e-82 310.1 435 42.8
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 5.6e-82 308.9 456 41.2
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 5.6e-82 308.9 448 43.1
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 9.6e-82 308.1 448 42.0
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 1.3e-81 307.8 435 43.2
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 2.8e-81 306.6 453 43.0
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 3.7e-81 306.2 452 42.5
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 8.1e-81 305.1 432 44.4
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 1.4e-80 304.3 444 43.7
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 2.4e-80 303.5 415 43.1
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.4e-80 303.5 434 44.2
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 3.1e-80 303.1 436 43.6
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 3.4e-79 299.7 417 43.4
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 4.5e-79 299.3 465 39.8
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 7.6e-79 298.5 445 42.7
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 7.6e-79 298.5 436 45.0
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 2.2e-78 297.0 434 43.3
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 1.1e-77 294.7 429 43.4
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 1.1e-77 294.7 429 43.4
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 1.9e-77 293.9 434 42.2
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 2.5e-77 293.5 454 41.6
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.6e-76 290.8 427 43.3
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 3.5e-76 289.7 393 44.0
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 1.3e-75 287.7 446 40.1
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 1.3e-75 287.7 425 40.7
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 1.8e-75 287.3 480 38.1
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 5.7e-74 282.3 458 40.2
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 3.7e-73 279.6 442 39.8
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 1.8e-72 277.3 407 41.8
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 2.4e-72 276.9 434 41.9
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 4.1e-72 276.2 452 39.2
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 4.1e-72 276.2 427 40.7
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 3.4e-71 273.1 459 39.4
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 4.5e-71 272.7 447 40.9
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 1.0e-70 271.6 431 39.2
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 1.3e-70 271.2 444 41.7
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 2.2e-70 270.4 431 39.0
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 2.2e-70 270.4 438 40.9
Carub.0007s1617 Capsella rubella HOM05D005804 ORTHO05D006849 3.8e-70 269.6 160 78.1
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 3.8e-70 269.6 476 38.4
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 9.3e-69 265.0 428 40.9
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 9.3e-69 265.0 433 39.0
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 6.1e-68 262.3 426 39.2
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 7.9e-68 261.9 392 40.8
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 1.3e-67 261.2 432 39.1
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 2.5e-66 256.9 413 39.2
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 4.3e-66 256.1 461 37.7
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 3.7e-65 253.1 424 38.7
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 6.3e-65 252.3 404 40.8
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 9.1e-64 248.4 388 38.7
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 2.0e-63 247.3 474 35.9
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 3.8e-62 243.0 435 39.1
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 3.0e-59 233.4 411 36.5
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 2.0e-55 220.7 243 54.3
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 5.9e-55 219.2 265 48.7
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 6.5e-54 215.7 562 29.4
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 6.5e-54 215.7 449 35.4
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 2.1e-52 210.7 244 48.0
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 2.1e-52 210.7 429 35.2
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 1.4e-51 208.0 196 53.1
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 2.3e-51 207.2 410 34.9
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 3.3e-50 203.4 224 48.7
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 2.2e-49 200.7 222 48.2
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 1.0e-46 191.8 462 30.5
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 3.8e-46 189.9 142 58.5
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 1.5e-45 188.0 174 59.2
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 4.7e-44 183.0 132 59.1
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 8.0e-44 182.2 441 33.1
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 5.2e-43 179.5 321 38.9
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 2.6e-42 177.2 371 34.5
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 3.3e-42 176.8 137 59.9
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 5.0e-38 162.9 321 37.4
Lalb_Chr08g0237181 Lupinus albus HOM05D005804 ORTHO05D006849 1.1e-37 161.8 130 57.7
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 9.4e-37 158.7 485 27.6
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 4.7e-36 156.4 326 37.7
ATR0178G019 Amborella trichopoda HOM05D005804 ORTHO05D006849 1.4e-35 154.8 125 58.4
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 1.8e-35 154.5 189 42.9
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 1.8e-35 154.5 189 42.9
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 2.4e-32 144.1 185 45.4
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 2.0e-31 141.0 196 39.3
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 5.5e-29 132.9 175 48.0
SGA_v2.0_scaffold110G31174 Striga asiatica HOM05D052586 ORTHO05D006849 3.6e-28 130.2 117 47.0
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.4e-27 128.3 162 46.9
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 1.4e-27 128.3 162 46.3
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 4.0e-27 126.7 162 46.9
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 3.4e-26 123.6 163 45.4
SEGI_07598 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 7.5e-26 122.5 134 41.8
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 1.3e-25 121.7 144 47.9
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 6.3e-25 119.4 163 46.0
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 8.3e-25 119.0 149 45.6
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 4.3e-21 106.7 119 49.6
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 9.5e-21 105.5 160 41.2
Mapoly0096s0044 Marchantia polymorpha HOM05D005804 ORTHO05D006849 1.2e-20 105.1 140 34.3
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 2.8e-20 104.0 157 42.7
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 1.8e-19 101.3 154 42.2
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 9.8e-18 95.5 134 44.0
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 3.7e-17 93.6 103 47.6
SalBow2G1912 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.8e-16 91.3 92 48.9
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 2.3e-14 84.3 268 32.1
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 6.6e-14 82.8 169 34.3
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 1.1e-11 75.5 147 38.8
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 8.3e-09 65.9 49 61.2
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 1.1e-08 65.5 138 35.5
Actinidia36808 Actinidia chinensis HOM05D005804 ORTHO05D006849 7.8e-07 59.3 71 40.8
CSS0025658 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 1.7e-06 58.2 163 28.8


User provided reference genes

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