Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 1.8e-60 235.7 116 100.0
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 2.1e-29 132.5 63 100.0
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 2.1e-29 132.5 71 91.5
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 2.0e-27 125.9 87 75.9
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 4.1e-25 118.2 61 95.1
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 4.1e-25 118.2 61 95.1
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 4.1e-25 118.2 66 86.4
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 7.0e-25 117.5 66 86.4
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 9.1e-25 117.1 66 84.8
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 1.6e-24 116.3 66 84.8
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 4.5e-24 114.8 64 89.1
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.0e-23 113.6 64 87.5
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.0e-23 113.6 64 87.5
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 1.7e-23 112.8 65 83.1
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 6.5e-23 110.9 61 86.9
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 1.9e-22 109.4 61 85.2
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 1.9e-22 109.4 65 81.5
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 3.2e-22 108.6 61 83.6
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 8.0e-21 104.0 61 86.9
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 2.3e-20 102.4 61 85.2
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 4.0e-20 101.7 61 80.3
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 2.0e-19 99.4 70 67.1
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 5.7e-19 97.8 65 72.3
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 1.3e-18 96.7 78 64.1
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 2.8e-18 95.5 61 75.4
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 3.7e-18 95.1 61 75.4
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 3.7e-18 95.1 65 69.2
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 3.7e-18 95.1 64 73.4
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 8.3e-18 94.0 60 75.0
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 8.3e-18 94.0 61 75.4
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 1.1e-17 93.6 65 70.8
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 1.4e-17 93.2 65 70.8
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 1.4e-17 93.2 65 70.8
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 1.4e-17 93.2 61 72.1
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 1.8e-17 92.8 61 72.1
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 1.8e-17 92.8 65 67.7
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 3.1e-17 92.0 64 73.4
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 3.1e-17 92.0 61 75.4
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 4.1e-17 91.7 61 73.8
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 4.1e-17 91.7 61 70.5
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 5.3e-17 91.3 64 73.4
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 5.3e-17 91.3 65 70.8
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 5.3e-17 91.3 78 60.3
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 5.3e-17 91.3 61 67.2
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 5.3e-17 91.3 61 72.1
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 7.0e-17 90.9 76 65.8
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 7.0e-17 90.9 61 73.8
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 7.0e-17 90.9 61 70.5
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 9.1e-17 90.5 59 76.3
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 9.1e-17 90.5 61 73.8
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 9.1e-17 90.5 61 70.5
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 1.2e-16 90.1 60 70.0
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 1.2e-16 90.1 65 70.8
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 1.6e-16 89.7 61 72.1
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 1.6e-16 89.7 65 70.8
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 1.6e-16 89.7 63 71.4
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 1.6e-16 89.7 61 73.8
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 2.7e-16 89.0 60 71.7
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 3.5e-16 88.6 70 60.0
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 3.5e-16 88.6 64 67.2
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 5.9e-16 87.8 61 73.8
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 5.9e-16 87.8 59 69.5
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.7e-16 87.4 61 70.5
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 1.0e-15 87.0 64 67.2
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.3e-15 86.7 61 68.9
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 1.3e-15 86.7 60 70.0
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 1.3e-15 86.7 87 52.9
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 1.7e-15 86.3 65 63.1
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.7e-15 86.3 64 68.8
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 2.2e-15 85.9 61 68.9
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 2.2e-15 85.9 61 68.9
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 2.2e-15 85.9 63 69.8
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 2.2e-15 85.9 61 68.9
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 2.2e-15 85.9 70 61.4
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 2.2e-15 85.9 70 61.4
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 2.2e-15 85.9 60 73.3
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 2.9e-15 85.5 65 67.7
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 2.9e-15 85.5 61 68.9
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 3.8e-15 85.1 64 67.2
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 3.8e-15 85.1 65 63.1
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 5.0e-15 84.7 61 68.9
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 6.5e-15 84.3 60 65.0
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 6.5e-15 84.3 70 60.0
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 8.5e-15 84.0 65 63.1
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 8.5e-15 84.0 63 65.1
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 8.5e-15 84.0 60 66.7
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 1.1e-14 83.6 61 68.9
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 1.1e-14 83.6 60 66.7
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 1.9e-14 82.8 60 66.7
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 2.5e-14 82.4 65 66.2
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 2.5e-14 82.4 60 66.7
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 5.5e-14 81.3 41 90.2
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 9.4e-14 80.5 60 65.0
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 9.4e-14 80.5 69 60.9
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 1.2e-13 80.1 62 61.3
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.6e-13 79.7 60 63.3
BcaC09g49648 Brassica carinata HOM05D008686 ORTHO05D010632 1.4e-12 76.6 84 52.4
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 1.4e-12 76.6 40 90.0
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 1.8e-12 76.3 62 58.1
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 4.0e-12 75.1 39 89.7
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 5.2e-12 74.7 60 63.3
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 1.5e-11 73.2 72 52.8
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 3.4e-11 72.0 51 68.6
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 7.5e-11 70.9 61 62.3
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 7.5e-11 70.9 69 50.7
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 9.8e-11 70.5 65 53.8
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 9.8e-11 70.5 65 53.8
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 9.8e-11 70.5 65 53.8
BcaC08g44776 Brassica carinata HOM05D008686 ORTHO05D010632 1.7e-10 69.7 84 47.6
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 6.3e-10 67.8 39 82.1
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 8.3e-10 67.4 61 55.7
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 3.1e-09 65.5 50 64.0
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 5.4e-09 64.7 59 59.3
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.2e-08 63.5 46 65.2
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.2e-08 63.5 46 65.2
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.2e-08 63.5 46 65.2
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 1.0e-07 60.5 62 54.8
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 1.0e-07 60.5 59 52.5
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 1.1e-06 57.0 39 66.7
BcaC04g18968 Brassica carinata HOM05D008686 ORTHO05D010632 3.3e-06 55.5 39 69.2


User provided reference genes

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