Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 1.9e-141 505.8 238 100.0
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 1.1e-72 277.3 158 86.7
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 2.6e-50 203.0 149 67.1
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.3e-49 200.7 153 64.7
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 1.7e-49 200.3 154 62.3
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 8.3e-49 198.0 151 63.6
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 1.4e-48 197.2 153 61.4
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 6.0e-47 191.8 153 61.4
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 6.6e-46 188.3 153 63.4
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 2.5e-45 186.4 153 61.4
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 4.3e-45 185.7 137 68.6
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 1.2e-44 184.1 137 67.9
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 4.7e-44 182.2 162 59.3
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 6.2e-44 181.8 135 68.1
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 1.1e-43 181.0 147 60.5
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.1e-43 181.0 147 60.5
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 4.0e-43 179.1 136 68.4
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 6.8e-43 178.3 138 64.5
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 6.8e-43 178.3 114 77.2
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 8.9e-43 177.9 137 64.2
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 8.9e-43 177.9 153 55.6
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.2e-42 177.6 136 66.2
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 1.5e-42 177.2 137 64.2
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 2.0e-42 176.8 135 62.2
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 2.6e-42 176.4 137 63.5
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 5.8e-42 175.3 154 59.7
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 1.3e-41 174.1 143 59.4
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 1.7e-41 173.7 101 85.1
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 2.2e-41 173.3 153 58.8
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 8.3e-41 171.4 135 63.0
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 3.2e-40 169.5 154 53.9
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 4.1e-40 169.1 132 65.9
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 5.4e-40 168.7 137 59.9
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 5.4e-40 168.7 138 58.0
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 1.2e-39 167.5 137 61.3
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 2.1e-39 166.8 132 64.4
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 3.5e-39 166.0 135 57.8
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 4.6e-39 165.6 129 67.4
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 3.9e-38 162.5 107 75.7
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 8.6e-38 161.4 155 55.5
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 1.1e-37 161.0 135 57.0
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 1.5e-37 160.6 153 56.2
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 1.9e-37 160.2 134 60.4
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 1.9e-37 160.2 137 58.4
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 1.9e-37 160.2 135 56.3
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 3.3e-37 159.5 134 61.9
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 4.7e-36 155.6 135 55.6
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 6.2e-36 155.2 144 54.9
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.8e-35 153.7 132 58.3
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 2.4e-35 153.3 133 59.4
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 3.1e-35 152.9 132 58.3
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 5.2e-35 152.1 138 53.6
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 1.2e-34 151.0 134 57.5
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 1.2e-34 151.0 134 57.5
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 1.5e-34 150.6 132 59.8
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 2.0e-34 150.2 143 56.6
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 9.9e-34 147.9 172 47.1
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 3.8e-33 146.0 133 56.4
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 3.8e-33 146.0 107 65.4
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 6.4e-33 145.2 119 62.2
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 6.4e-33 145.2 153 52.3
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 1.1e-32 144.4 153 51.6
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 1.9e-32 143.7 129 56.6
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 2.4e-32 143.3 87 81.6
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 3.2e-32 142.9 95 74.7
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 9.2e-32 141.4 153 51.0
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 2.7e-31 139.8 154 51.3
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 3.5e-31 139.4 124 58.1
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 6.0e-31 138.7 87 78.2
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 2.3e-30 136.7 153 49.7
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 2.3e-30 136.7 129 58.1
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 3.0e-30 136.3 87 77.0
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 3.0e-30 136.3 88 76.1
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 3.0e-30 136.3 120 57.5
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 3.9e-30 136.0 133 55.6
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 5.1e-30 135.6 87 77.0
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 5.1e-30 135.6 137 51.1
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 8.7e-30 134.8 86 77.9
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 1.9e-29 133.7 86 77.9
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 4.3e-29 132.5 86 76.7
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 4.3e-29 132.5 86 76.7
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 5.6e-29 132.1 127 55.9
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 2.1e-28 130.2 74 87.8
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 2.1e-28 130.2 74 87.8
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 6.2e-28 128.6 114 60.5
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 8.1e-28 128.3 153 48.4
C01p09900 Brassica napus HOM05D006034 ORTHO05D007535 1.1e-27 127.9 119 59.7
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 1.8e-27 127.1 114 59.6
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 1.8e-27 127.1 135 48.9
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 6.9e-27 125.2 131 52.7
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 1.5e-26 124.0 145 48.3
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.5e-26 124.0 86 67.4
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 2.6e-26 123.2 158 47.5
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 4.4e-26 122.5 132 48.5
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 5.8e-26 122.1 129 49.6
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 9.9e-26 121.3 109 55.0
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 9.9e-26 121.3 120 53.3
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 3.2e-24 116.3 153 43.8
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 3.2e-24 116.3 93 61.3
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 5.4e-24 115.5 153 43.8
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 1.2e-23 114.4 86 67.4
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 1.9e-21 107.1 87 58.6
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 4.3e-21 105.9 113 54.0
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 7.3e-21 105.1 83 65.1
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 3.6e-20 102.8 66 69.7
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 3.1e-19 99.8 96 50.0
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 2.6e-18 96.7 70 68.6
BraA01t00799Z Brassica rapa HOM05D006034 ORTHO05D007535 3.4e-18 96.3 63 76.2
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 3.2e-16 89.7 143 37.8
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 2.1e-15 87.0 74 55.4
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 1.8e-14 84.0 171 33.9
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 3.0e-14 83.2 79 54.4
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 4.8e-12 75.9 171 34.5
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 2.9e-09 66.6 79 49.4
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 4.9e-09 65.9 88 43.2
BolC1t00952H Brassica oleracea HOM05D006034 ORTHO05D041974 1.9e-08 63.9 87 43.7
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 4.2e-08 62.8 50 54.0
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 9.3e-08 61.6 74 43.2
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 1.6e-07 60.8 69 53.6
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 1.0e-06 58.2 79 41.8


User provided reference genes

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