Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52208 Brassica carinata HOM05D002666 ORTHO05D004769 2.9e-44 181.4 86 100.0
BcaC09g52206 Brassica carinata HOM05D002666 ORTHO05D004769 4.8e-39 164.1 77 100.0
C01p09860 Brassica napus HOM05D002666 ORTHO05D004769 4.8e-39 164.1 77 100.0
BolC1t00948H Brassica oleracea HOM05D002666 ORTHO05D004769 4.8e-39 164.1 77 100.0
BraA01t00797Z Brassica rapa HOM05D002666 ORTHO05D004769 5.3e-38 160.6 77 97.4
C01p09920 Brassica napus HOM05D002666 ORTHO05D004769 2.2e-36 155.2 77 93.5
BolC1t00954H Brassica oleracea HOM05D002666 ORTHO05D004769 2.2e-36 155.2 77 93.5
BcaC09g52209 Brassica carinata HOM05D002666 ORTHO05D004769 5.0e-36 154.1 80 91.2
C01p09850 Brassica napus HOM05D002666 ORTHO05D004769 5.0e-36 154.1 80 91.2
BolC1t00947H Brassica oleracea HOM05D002666 ORTHO05D004769 5.0e-36 154.1 80 91.2
BcaC09g52215 Brassica carinata HOM05D002666 ORTHO05D004769 1.9e-35 152.1 80 90.0
C01p09810 Brassica napus HOM05D002666 ORTHO05D004769 1.9e-35 152.1 80 90.0
BraA01t00796Z Brassica rapa HOM05D002666 ORTHO05D004769 3.2e-35 151.4 80 87.5
A01p08490 Brassica napus HOM05D002666 ORTHO05D004769 9.4e-35 149.8 80 86.2
BolC1t00942H Brassica oleracea HOM05D002666 ORTHO05D004769 1.6e-34 149.1 80 88.8
Carub.0007s1098 Capsella rubella HOM05D002666 ORTHO05D004769 7.2e-19 97.1 68 66.2
AT4G29550 Arabidopsis thaliana HOM05D002666 ORTHO05D004769 8.0e-18 93.6 68 63.2
AL7G22830 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 1.4e-17 92.8 68 64.7
AL7G22800 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 5.7e-16 87.4 66 65.2
BcaC09g52207 Brassica carinata HOM05D002666 ORTHO05D004769 4.8e-15 84.3 49 79.6
BcaC01g00038 Brassica carinata HOM05D002706 ORTHO05D003253 1.4e-14 82.8 73 53.4
BolC3t19754H Brassica oleracea HOM05D002706 ORTHO05D003253 4.1e-14 81.3 71 53.5
BcaC01g00518 Brassica carinata HOM05D002666 ORTHO05D004769 5.4e-14 80.9 71 52.1
A08p20500 Brassica napus HOM05D002666 ORTHO05D004769 5.4e-14 80.9 71 52.1
A08p24450 Brassica napus HOM05D002666 ORTHO05D004769 5.4e-14 80.9 71 52.1
BolC3t20342H Brassica oleracea HOM05D002666 ORTHO05D004769 5.4e-14 80.9 71 52.1
BraA08t34119Z Brassica rapa HOM05D002666 ORTHO05D004769 5.4e-14 80.9 71 52.1
BraA08t34123Z Brassica rapa HOM05D002666 ORTHO05D004769 5.4e-14 80.9 71 52.1
BraA08t34400Z Brassica rapa HOM05D002666 ORTHO05D004769 5.4e-14 80.9 71 52.1
Carub.0006s2550 Capsella rubella HOM05D002666 ORTHO05D004769 5.4e-14 80.9 77 51.9
A08p21690 Brassica napus HOM05D002666 ORTHO05D004769 7.0e-14 80.5 71 52.1
A08p21700 Brassica napus HOM05D002666 ORTHO05D004769 7.0e-14 80.5 71 50.7
BraA08t34120Z Brassica rapa HOM05D002666 ORTHO05D004769 7.0e-14 80.5 71 52.1
A08p11010 Brassica napus HOM05D002666 ORTHO05D004769 2.7e-13 78.6 71 50.7
AL7G22850 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 5.9e-13 77.4 77 51.9
AL8G27040 Arabidopsis lyrata HOM05D002666 ORTHO05D011316 5.9e-13 77.4 68 54.4
CARHR272930 Cardamine hirsuta HOM05D002666 ORTHO05D004769 5.9e-13 77.4 69 53.6
BcaNung00436 Brassica carinata HOM05D002666 ORTHO05D004769 1.7e-12 75.9 74 48.6
A03p58500 Brassica napus HOM05D002666 ORTHO05D004769 1.5e-11 72.8 68 50.0
A03p58520 Brassica napus HOM05D002666 ORTHO05D004769 1.5e-11 72.8 68 50.0
BraA03t14911Z Brassica rapa HOM05D002666 ORTHO05D004769 1.5e-11 72.8 68 50.0
C08p10150 Brassica napus HOM05D002666 ORTHO05D004769 1.9e-11 72.4 74 51.4
BolC8t48693H Brassica oleracea HOM05D002666 ORTHO05D004769 1.9e-11 72.4 74 51.4
AL7G23540 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 3.3e-11 71.6 70 50.0
BcaC07g38268 Brassica carinata HOM05D002666 ORTHO05D004769 4.2e-11 71.2 71 52.1
CARHR111260 Cardamine hirsuta HOM05D002666 ORTHO05D004769 5.5e-11 70.9 80 47.5
BcaNung01344 Brassica carinata HOM05D002666 ORTHO05D004769 7.2e-11 70.5 70 50.0
BcaNung01346 Brassica carinata HOM05D002666 ORTHO05D004769 7.2e-11 70.5 71 50.7
BcaNung02900 Brassica carinata HOM05D002666 ORTHO05D004769 9.5e-11 70.1 68 50.0
A08p19510 Brassica napus HOM05D002666 ORTHO05D004769 9.5e-11 70.1 83 45.8
C07p56520 Brassica napus HOM05D002666 ORTHO05D004769 9.5e-11 70.1 68 50.0
BolC7t46130H Brassica oleracea HOM05D002666 ORTHO05D004769 9.5e-11 70.1 68 50.0
BraA08t33912Z Brassica rapa HOM05D002666 ORTHO05D004769 9.5e-11 70.1 83 45.8
BcaC01g01196 Brassica carinata HOM05D002666 ORTHO05D004769 1.2e-10 69.7 83 44.6
A08p20570 Brassica napus HOM05D002666 ORTHO05D004769 1.6e-10 69.3 71 52.1
C04p31880 Brassica napus HOM05D002666 ORTHO05D004769 1.6e-10 69.3 66 53.0
BraA08t34013Z Brassica rapa HOM05D002666 ORTHO05D004769 1.6e-10 69.3 71 53.5
AL4G17220 Arabidopsis lyrata HOM05D002666 ORTHO05D015915 2.1e-10 68.9 67 52.2
BcaC01g01195 Brassica carinata HOM05D002666 ORTHO05D004769 2.1e-10 68.9 70 50.0
Thhalv10027377m.g Eutrema salsugineum HOM05D002666 ORTHO05D004769 2.8e-10 68.6 71 49.3
AL4G37990 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 3.6e-10 68.2 78 48.7
AL7G23510 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 3.6e-10 68.2 76 47.4
BcaB03g12623 Brassica carinata HOM05D002666 ORTHO05D004769 4.7e-10 67.8 70 48.6
C03p89040 Brassica napus HOM05D002666 ORTHO05D004769 4.7e-10 67.8 70 50.0
Carub.0004s2249 Capsella rubella HOM05D002666 ORTHO05D004769 6.1e-10 67.4 79 48.1
AL446U10010 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 8.0e-10 67.0 68 50.0
AL8G41050 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 8.0e-10 67.0 68 50.0
BcaNung03123 Brassica carinata HOM05D002666 ORTHO05D004769 8.0e-10 67.0 69 46.4
C01p07590 Brassica napus HOM05D002666 ORTHO05D004769 8.0e-10 67.0 69 46.4
BolC1t00739H Brassica oleracea HOM05D002666 ORTHO05D004769 8.0e-10 67.0 69 46.4
BcaNung03124 Brassica carinata HOM05D002666 ORTHO05D004769 1.0e-09 66.6 72 45.8
A01p06350 Brassica napus HOM05D002666 ORTHO05D004769 1.0e-09 66.6 69 47.8
A01p06820 Brassica napus HOM05D002666 ORTHO05D004769 1.0e-09 66.6 69 47.8
BraA01t00600Z Brassica rapa HOM05D002666 ORTHO05D004769 1.0e-09 66.6 69 47.8
BraA01t00634Z Brassica rapa HOM05D002666 ORTHO05D004769 1.0e-09 66.6 69 47.8
Thhalv10000285m.g Eutrema salsugineum HOM05D002666 ORTHO05D004769 1.0e-09 66.6 65 50.8
CARHR111270 Cardamine hirsuta HOM05D002666 ORTHO05D004769 1.4e-09 66.2 66 53.0
Sp5g20790 Schrenkiella parvula HOM05D002666 ORTHO05D004769 1.4e-09 66.2 68 47.1
Aa31LG4G17090 Aethionema arabicum HOM05D002666 ORTHO05D004769 1.8e-09 65.9 80 45.0
BcaC09g51773 Brassica carinata HOM05D002666 ORTHO05D004769 1.8e-09 65.9 66 54.5
BolC3t21215H Brassica oleracea HOM05D002666 ORTHO05D004769 1.8e-09 65.9 70 47.1
BcaC07g39854 Brassica carinata HOM05D002666 ORTHO05D004769 2.3e-09 65.5 67 50.7
BolC8t50673H Brassica oleracea HOM05D002666 ORTHO05D004769 2.3e-09 65.5 67 50.7
Carub.0002s0722 Capsella rubella HOM05D002666 ORTHO05D004769 2.3e-09 65.5 69 50.7
Carub.0005s1048 Capsella rubella HOM05D002666 ORTHO05D014834 2.3e-09 65.5 79 43.0
Aa31LG4G17100 Aethionema arabicum HOM05D002666 ORTHO05D004769 3.0e-09 65.1 79 44.3
A09p48260 Brassica napus HOM05D002666 ORTHO05D004769 3.0e-09 65.1 67 49.3
BraA09t40279Z Brassica rapa HOM05D002666 ORTHO05D004769 3.0e-09 65.1 67 49.3
AL4G25770 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 4.0e-09 64.7 63 52.4
Carub.0007s1095 Capsella rubella HOM05D002666 ORTHO05D012460 4.0e-09 64.7 69 52.2
AL5G23050 Arabidopsis lyrata HOM05D002666 ORTHO05D014834 5.2e-09 64.3 73 45.2
Carub.0004s2120 Capsella rubella HOM05D002666 ORTHO05D011316 5.2e-09 64.3 69 47.8
A01p08260 Brassica napus HOM05D002666 ORTHO05D004769 8.9e-09 63.5 66 51.5
C08p30530 Brassica napus HOM05D002666 ORTHO05D004769 8.9e-09 63.5 67 47.8
Carub.0008s0956 Capsella rubella HOM05D002666 ORTHO05D004769 8.9e-09 63.5 68 50.0
CARHR135310 Cardamine hirsuta HOM05D002666 ORTHO05D004769 8.9e-09 63.5 67 49.3
BcaC09g52197 Brassica carinata HOM05D002666 ORTHO05D004769 1.2e-08 63.2 66 53.0
C01p09250 Brassica napus HOM05D002666 ORTHO05D004769 1.2e-08 63.2 66 53.0
BolC1t00917H Brassica oleracea HOM05D002666 ORTHO05D004769 1.2e-08 63.2 66 53.0
Carub.0008s2459 Capsella rubella HOM05D002666 ORTHO05D004769 1.2e-08 63.2 68 50.0
CARHR289130 Cardamine hirsuta HOM05D002666 ORTHO05D004769 1.2e-08 63.2 71 47.9
BraA01t00771Z Brassica rapa HOM05D002666 ORTHO05D004769 1.5e-08 62.8 66 51.5
AL4G38020 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 2.0e-08 62.4 78 46.2
AL7G22510 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 2.0e-08 62.4 68 45.6
BcaC07g39850 Brassica carinata HOM05D002666 ORTHO05D004769 2.0e-08 62.4 67 47.8
BcaC09g52202 Brassica carinata HOM05D002666 ORTHO05D004769 2.0e-08 62.4 66 51.5
C08p30560 Brassica napus HOM05D002666 ORTHO05D004769 2.0e-08 62.4 67 47.8
BolC1t00908H Brassica oleracea HOM05D002666 ORTHO05D004769 2.0e-08 62.4 66 51.5
Carub.0004s2646 Capsella rubella HOM05D002666 ORTHO05D004769 3.4e-08 61.6 65 47.7
AL7G23520 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 4.4e-08 61.2 76 43.4
BcaB01g00108 Brassica carinata HOM05D002666 ORTHO05D004769 4.4e-08 61.2 67 49.3
Carub.0005s1046 Capsella rubella HOM05D002666 ORTHO05D014834 5.7e-08 60.8 80 42.5
AL7G44900 Arabidopsis lyrata HOM05D002666 ORTHO05D012460 7.5e-08 60.5 67 47.8
BcaC09g51769 Brassica carinata HOM05D002666 ORTHO05D004769 7.5e-08 60.5 66 50.0
A01p08210 Brassica napus HOM05D002666 ORTHO05D004769 7.5e-08 60.5 66 50.0
BraA01t00767Z Brassica rapa HOM05D002666 ORTHO05D004769 7.5e-08 60.5 66 50.0
Thhalv10024136m.g Eutrema salsugineum HOM05D002666 ORTHO05D004769 7.5e-08 60.5 65 49.2
Aa31LG2G16630 Aethionema arabicum HOM05D002666 ORTHO05D004769 9.8e-08 60.1 66 45.5
AL5G23090 Arabidopsis lyrata HOM05D002666 ORTHO05D014834 9.8e-08 60.1 72 44.4
A04p29060 Brassica napus HOM05D002666 ORTHO05D004769 9.8e-08 60.1 75 46.7
BraA01t00770Z Brassica rapa HOM05D002666 ORTHO05D004769 9.8e-08 60.1 65 50.8
BcaC09g52198 Brassica carinata HOM05D002666 ORTHO05D004769 1.7e-07 59.3 66 48.5
C01p09230 Brassica napus HOM05D002666 ORTHO05D004769 1.7e-07 59.3 66 48.5
C08p05230 Brassica napus HOM05D002666 ORTHO05D014834 1.7e-07 59.3 75 42.7
Aa31sc38G80 Aethionema arabicum HOM05D002666 ORTHO05D004769 2.2e-07 58.9 68 42.6
AT2G20620 Arabidopsis thaliana HOM05D002666 ORTHO05D004769 2.2e-07 58.9 68 48.5
BcaB04g17446 Brassica carinata HOM05D002666 ORTHO05D014834 2.2e-07 58.9 74 43.2
C01p09190 Brassica napus HOM05D002666 ORTHO05D012460 2.8e-07 58.5 69 42.0
BolC1t00911H Brassica oleracea HOM05D002666 ORTHO05D012460 2.8e-07 58.5 69 42.0
BcaB04g17448 Brassica carinata HOM05D002666 ORTHO05D014834 3.7e-07 58.2 77 45.5
CARHR135320 Cardamine hirsuta HOM05D002666 ORTHO05D004769 3.7e-07 58.2 78 43.6
BolC4t28134H Brassica oleracea HOM05D002666 ORTHO05D004769 8.3e-07 57.0 75 46.7
BcaC02g07340 Brassica carinata HOM05D002666 ORTHO05D004769 1.1e-06 56.6 79 45.6
Aa31LG8G17540 Aethionema arabicum HOM05D002666 ORTHO05D004769 1.4e-06 56.2 77 41.6
BcaC09g51774 Brassica carinata HOM05D000574 ORTHO05D004834 1.4e-06 56.2 70 41.4
BcaNung02898 Brassica carinata HOM05D002666 ORTHO05D004769 1.4e-06 56.2 74 40.5
BcaNung02899 Brassica carinata HOM05D002666 ORTHO05D004769 1.4e-06 56.2 74 40.5
BraA04t18378Z Brassica rapa HOM05D002666 ORTHO05D004769 1.4e-06 56.2 75 45.3
Aa31sc38G60 Aethionema arabicum HOM05D002666 ORTHO05D004769 1.8e-06 55.8 68 41.2
AL3G53700 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 1.8e-06 55.8 76 39.5
BcaC09g51926 Brassica carinata HOM05D002666 ORTHO05D004769 1.8e-06 55.8 69 42.0
Thhalv10027170m.g Eutrema salsugineum HOM05D002666 ORTHO05D012460 1.8e-06 55.8 71 39.4
C08p06010 Brassica napus HOM05D002666 ORTHO05D014834 2.4e-06 55.5 75 41.3
BolC8t47406H Brassica oleracea HOM05D002666 ORTHO05D014834 2.4e-06 55.5 75 41.3
BcaC07g37199 Brassica carinata HOM05D002666 ORTHO05D014834 4.1e-06 54.7 75 41.3
BraA01t00769Z Brassica rapa HOM05D002666 ORTHO05D012460 4.1e-06 54.7 77 40.3
Aa31LG2G19600 Aethionema arabicum HOM05D002666 ORTHO05D004769 5.4e-06 54.3 76 44.7
BcaC09g52201 Brassica carinata HOM05D002666 ORTHO05D012460 5.4e-06 54.3 79 38.0
BolC1t00912H Brassica oleracea HOM05D002666 ORTHO05D012460 5.4e-06 54.3 79 38.0
CARHR237650 Cardamine hirsuta HOM05D002666 ORTHO05D004769 5.4e-06 54.3 63 46.0
Aa31LG11G11580 Aethionema arabicum HOM05D002666 ORTHO05D004769 7.0e-06 53.9 63 44.4
BcaC09g52199 Brassica carinata HOM05D002666 ORTHO05D012460 7.0e-06 53.9 77 39.0
C01p09210 Brassica napus HOM05D002666 ORTHO05D012460 7.0e-06 53.9 77 39.0
BolC1t00914H Brassica oleracea HOM05D002666 ORTHO05D012460 7.0e-06 53.9 77 39.0
Carub.0007s2103 Capsella rubella HOM05D002666 ORTHO05D004769 7.0e-06 53.9 66 45.5
BcaC09g51770 Brassica carinata HOM05D002666 ORTHO05D012460 9.2e-06 53.5 76 39.5
BcaC09g51772 Brassica carinata HOM05D002666 ORTHO05D012460 9.2e-06 53.5 76 39.5
BraA02t07090Z Brassica rapa HOM05D002666 ORTHO05D011316 9.2e-06 53.5 70 42.9
Thhalv10027039m.g Eutrema salsugineum HOM05D002666 ORTHO05D012460 9.2e-06 53.5 74 35.1


User provided reference genes

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