Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52200 Brassica carinata HOM05D016251 ORTHO05D017520 1.9e-181 639.0 314 100.0
C01p09200 Brassica napus HOM05D016251 ORTHO05D017520 2.5e-178 628.6 310 100.0
A01p08230 Brassica napus HOM05D016251 ORTHO05D017520 3.0e-171 605.1 333 91.0
BraA01t00768Z Brassica rapa HOM05D016251 ORTHO05D017520 1.6e-153 546.2 294 92.9
BcaC09g51771 Brassica carinata HOM05D016251 ORTHO05D017520 8.2e-121 437.6 306 70.3
BolC1t00913H Brassica oleracea HOM05D016251 ORTHO05D017520 5.8e-66 255.4 126 100.0
CARHR237830 Cardamine hirsuta HOM05D008365 ORTHO05D017520 7.4e-53 211.8 314 40.1
Thhalv10000684m.g Eutrema salsugineum HOM05D008365 ORTHO05D017520 8.7e-38 161.8 221 40.3
Carub.0004s1487 Capsella rubella HOM05D008365 ORTHO05D011149 1.9e-24 117.5 221 34.4
BolC1t00910H Brassica oleracea HOM05D016251 ORTHO05D017520 4.6e-23 112.8 62 88.7
AL7G23550 Arabidopsis lyrata HOM05D008615 ORTHO05D021443 3.9e-22 109.8 224 30.8
AL4G38000 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 6.7e-22 109.0 282 28.4
AL6G29250 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 1.5e-21 107.8 240 32.1
AL6G29230 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 2.6e-21 107.1 240 31.7
AL4G38030 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 8.2e-20 102.1 282 26.6
C03p88560 Brassica napus HOM05D008365 ORTHO05D011149 3.1e-19 100.1 214 32.7
BcaNung01345 Brassica carinata HOM05D008615 ORTHO05D021443 5.3e-19 99.4 263 29.3
Carub.0004s1486 Capsella rubella HOM05D008365 ORTHO05D011149 5.3e-19 99.4 242 30.6
CARHR215270 Cardamine hirsuta HOM05D008365 ORTHO05D011149 1.2e-18 98.2 239 29.7
C01p09180 Brassica napus HOM05D002666 ORTHO05D012460 3.4e-18 96.7 50 92.0
AL7G22840 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 4.5e-18 96.3 271 31.4
AL7G22480 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 1.7e-17 94.4 241 29.0
Sp7g27580 Schrenkiella parvula HOM05D008365 ORTHO05D011149 1.7e-17 94.4 260 30.0
C03p88570 Brassica napus HOM05D008365 ORTHO05D011149 5.0e-17 92.8 193 32.6
AT4G29770 Arabidopsis thaliana HOM05D008365 ORTHO05D011149 8.5e-17 92.0 164 32.9
BcaC01g01143 Brassica carinata HOM05D008365 ORTHO05D011149 8.5e-17 92.0 274 28.5
Carub.0005s1047 Capsella rubella HOM05D008615 ORTHO05D021391 1.4e-16 91.3 305 25.2
A07p02810 Brassica napus HOM05D008365 ORTHO05D011149 1.9e-16 90.9 231 31.6
BraA07t28079Z Brassica rapa HOM05D008365 ORTHO05D011149 1.9e-16 90.9 231 31.6
BcaC09g51774 Brassica carinata HOM05D000574 ORTHO05D004834 2.5e-16 90.5 251 25.5
Carub.0001s4054 Capsella rubella HOM05D008365 ORTHO05D014862 2.5e-16 90.5 225 29.8
Carub.0008s0192 Capsella rubella HOM05D008365 ORTHO05D011149 5.5e-16 89.4 151 37.1
BcaB03g12656 Brassica carinata HOM05D008365 ORTHO05D011149 7.2e-16 89.0 239 28.5
A01p08200 Brassica napus HOM05D000574 ORTHO05D004834 9.4e-16 88.6 269 25.3
BraA01t00766Z Brassica rapa HOM05D000574 ORTHO05D004834 9.4e-16 88.6 269 25.3
AL5G23100 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 1.2e-15 88.2 236 24.6
Thhalv10026005m.g Eutrema salsugineum HOM05D008365 ORTHO05D011149 1.2e-15 88.2 249 28.9
BcaNung02965 Brassica carinata HOM05D008365 ORTHO05D011149 2.1e-15 87.4 166 36.7
Carub.0001s4052 Capsella rubella HOM05D008365 ORTHO05D014862 2.1e-15 87.4 224 30.4
BraA08t33873Z Brassica rapa HOM05D008365 ORTHO05D011149 3.6e-15 86.7 204 31.9
A08p19110 Brassica napus HOM05D008365 ORTHO05D011149 4.7e-15 86.3 151 33.1
CARHR063690 Cardamine hirsuta HOM05D008365 ORTHO05D014862 6.1e-15 85.9 224 32.1
AL7G22490 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 7.9e-15 85.5 153 35.3
AL1G61110 Arabidopsis lyrata HOM05D008365 ORTHO05D014862 1.8e-14 84.3 226 30.1
A03p58490 Brassica napus HOM05D008615 ORTHO05D021443 3.0e-14 83.6 174 33.3
CARHR163030 Cardamine hirsuta HOM05D008365 ORTHO05D014862 3.9e-14 83.2 229 30.6
AL7G22500 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 5.2e-14 82.8 244 27.9
A08p19120 Brassica napus HOM05D008365 ORTHO05D011149 5.2e-14 82.8 154 37.0
CARHR063260 Cardamine hirsuta HOM05D008365 ORTHO05D014862 1.1e-13 81.6 223 31.4
BraA08t33874Z Brassica rapa HOM05D008365 ORTHO05D011149 2.6e-13 80.5 258 28.7
CARHR063700 Cardamine hirsuta HOM05D008365 ORTHO05D014862 2.6e-13 80.5 192 32.3
AL1G54760 Arabidopsis lyrata HOM05D008365 ORTHO05D014862 4.4e-13 79.7 221 28.5
BcaC09g51862 Brassica carinata HOM05D008365 ORTHO05D011149 7.4e-13 79.0 191 34.0
BolC1t00807H Brassica oleracea HOM05D008365 ORTHO05D011149 7.4e-13 79.0 191 34.0
Thhalv10026918m.g Eutrema salsugineum HOM05D008615 ORTHO05D011779 1.3e-12 78.2 218 29.8
AT4G29760 Arabidopsis thaliana HOM05D008365 ORTHO05D011149 1.7e-12 77.8 152 32.2
AL1G59580 Arabidopsis lyrata HOM05D008365 ORTHO05D014862 2.2e-12 77.4 225 31.1
Thhalv10027444m.g Eutrema salsugineum HOM05D008365 ORTHO05D011149 2.2e-12 77.4 152 33.6
C04p31890 Brassica napus HOM05D008615 ORTHO05D011779 3.7e-12 76.6 195 27.2
A08p19130 Brassica napus HOM05D008365 ORTHO05D011149 4.8e-12 76.3 258 28.7
AL1G32050 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 1.4e-11 74.7 153 28.8
C03p88590 Brassica napus HOM05D008365 ORTHO05D011149 2.4e-11 73.9 258 27.9
AT1G48180 Arabidopsis thaliana HOM05D008365 ORTHO05D014862 4.1e-11 73.2 189 29.6
A01p07560 Brassica napus HOM05D008365 ORTHO05D011149 4.1e-11 73.2 203 31.5
BcaB03g12655 Brassica carinata HOM05D008365 ORTHO05D011149 7.0e-11 72.4 255 26.3
BcaC03g15654 Brassica carinata HOM05D008615 ORTHO05D027756 9.1e-11 72.0 209 24.4
BolC2t09371H Brassica oleracea HOM05D008615 ORTHO05D027756 9.1e-11 72.0 209 24.4
BraA01t00699Z Brassica rapa HOM05D008365 ORTHO05D011149 1.2e-10 71.6 146 38.4
CARHR263650 Cardamine hirsuta HOM05D008365 ORTHO05D014862 2.0e-10 70.9 193 29.5
Thhalv10011766m.g Eutrema salsugineum HOM05D008365 ORTHO05D011149 2.0e-10 70.9 122 39.3
CARHR251110 Cardamine hirsuta HOM05D008365 ORTHO05D011149 3.5e-10 70.1 120 35.0
A02p20530 Brassica napus HOM05D008615 ORTHO05D027756 5.9e-10 69.3 230 24.3
C02p33310 Brassica napus HOM05D008615 ORTHO05D027756 7.7e-10 68.9 211 23.7
C01p08200 Brassica napus HOM05D008365 ORTHO05D011149 3.8e-09 66.6 148 35.1
Thhalv10000455m.g Eutrema salsugineum HOM05D008615 ORTHO05D011779 8.5e-09 65.5 169 25.4
CARHR063300 Cardamine hirsuta HOM05D008365 ORTHO05D116364 4.2e-08 63.2 100 37.0
Carub.0007s2333 Capsella rubella HOM05D000344 ORTHO05D003292 5.5e-08 62.8 260 23.8
AT5G18040 Arabidopsis thaliana HOM05D008365 ORTHO05D081110 1.2e-07 61.6 81 40.7
CARHR237670 Cardamine hirsuta HOM05D008365 ORTHO05D011149 2.7e-07 60.5 121 33.9
BraA03t14910Z Brassica rapa HOM05D008615 ORTHO05D021443 6.1e-07 59.3 106 34.9
AL1G49360 Arabidopsis lyrata HOM05D011295 ORTHO05D014420 1.0e-06 58.5 178 29.2


User provided reference genes

Program Settings