Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52193 Brassica carinata HOM05D000463 ORTHO05D032562 1.2e-39 166.0 83 100.0
BolC1t00472H Brassica oleracea HOM05D000305 ORTHO05D032562 1.2e-39 166.0 83 100.0
C01p04880 Brassica napus HOM05D000305 ORTHO05D032562 4.6e-39 164.1 83 98.8
BcaB02g07558 Brassica carinata HOM05D000463 ORTHO05D004638 1.3e-36 156.0 82 91.5
C06p25040 Brassica napus HOM05D000463 ORTHO05D004638 1.3e-36 156.0 82 91.5
BolC6t37661H Brassica oleracea HOM05D000463 ORTHO05D004638 1.3e-36 156.0 82 91.5
BcaB02g07555 Brassica carinata HOM05D000463 ORTHO05D004638 3.7e-36 154.5 82 89.0
BcaC08g44889 Brassica carinata HOM05D000463 ORTHO05D004638 3.7e-36 154.5 82 89.0
A07p23830 Brassica napus HOM05D000463 ORTHO05D004638 3.7e-36 154.5 82 90.2
BraA07t30036Z Brassica rapa HOM05D000463 ORTHO05D004638 3.7e-36 154.5 82 90.2
BcaC04g22023 Brassica carinata HOM05D000463 ORTHO05D004638 1.1e-35 152.9 82 91.5
Carub.0005s2488 Capsella rubella HOM05D000463 ORTHO05D004638 6.9e-35 150.2 83 90.4
C09p24500 Brassica napus HOM05D000463 ORTHO05D004638 9.1e-35 149.8 82 90.2
AT3G58030 Arabidopsis thaliana HOM05D000463 ORTHO05D004638 2.6e-34 148.3 83 89.2
BolC9t55366H Brassica oleracea HOM05D000463 ORTHO05D004638 2.6e-34 148.3 82 89.0
AL5G39690 Arabidopsis lyrata HOM05D000463 ORTHO05D004638 5.9e-34 147.1 83 88.0
Thhalv10005986m.g Eutrema salsugineum HOM05D000463 ORTHO05D004638 1.3e-33 146.0 83 88.0
CARHR168350 Cardamine hirsuta HOM05D000463 ORTHO05D004638 2.9e-33 144.8 83 89.2
Sp5g04690 Schrenkiella parvula HOM05D000463 ORTHO05D004638 5.0e-33 144.1 83 88.0
C08p33590 Brassica napus HOM05D000463 ORTHO05D004638 2.1e-31 138.7 84 86.9
BolC8t50955H Brassica oleracea HOM05D000463 ORTHO05D004638 2.1e-31 138.7 84 86.9
BraA09t40531Z Brassica rapa HOM05D000463 ORTHO05D004638 6.1e-31 137.1 84 85.7
A09p50850 Brassica napus HOM05D000463 ORTHO05D004638 3.0e-30 134.8 84 84.5
Aa31LG10G12730 Aethionema arabicum HOM05D000463 ORTHO05D004638 2.8e-28 128.3 83 78.3
BcaB02g08281 Brassica carinata HOM05D000463 ORTHO05D004638 6.3e-28 127.1 85 80.0
BcaC07g40176 Brassica carinata HOM05D000463 ORTHO05D004638 6.3e-28 127.1 88 80.7
THA.LOC104802629 Tarenaya hassleriana HOM05D000463 ORTHO05D004638 2.1e-23 112.1 83 69.9
THA.LOC104824479 Tarenaya hassleriana HOM05D000463 ORTHO05D004638 1.0e-22 109.8 83 68.7
C04p34360 Brassica napus HOM05D000463 ORTHO05D004638 1.4e-22 109.4 86 73.3
BcaC02g09982 Brassica carinata HOM05D000463 ORTHO05D004638 5.2e-22 107.5 86 72.1
BolC4t24998H Brassica oleracea HOM05D000463 ORTHO05D004638 5.2e-22 107.5 86 72.1
THA.LOC104820181 Tarenaya hassleriana HOM05D000463 ORTHO05D004638 8.8e-22 106.7 82 68.3
Sp4g24260 Schrenkiella parvula HOM05D000463 ORTHO05D004638 7.5e-13 77.0 84 50.0
AT2G42030 Arabidopsis thaliana HOM05D000463 ORTHO05D004638 1.7e-12 75.9 83 47.0
AL4G40400 Arabidopsis lyrata HOM05D000463 ORTHO05D004638 2.2e-12 75.5 83 49.4
Potri.016G058300 Populus trichocarpa HOM05D000463 ORTHO05D004638 3.7e-12 74.7 83 51.8
Ciclev10011813m.g Citrus clementina HOM05D000463 ORTHO05D004638 8.3e-12 73.6 82 52.4
Manes.09G036300 Manihot esculenta HOM05D000463 ORTHO05D004638 1.4e-11 72.8 83 51.8
Psat3g068080 Pisum sativum HOM05D000463 ORTHO05D004638 3.1e-11 71.6 73 49.3
Sabra06G0148700 Salix brachista HOM05D000463 ORTHO05D004638 5.4e-11 70.9 81 55.6
Manes.08G043800 Manihot esculenta HOM05D000463 ORTHO05D004638 9.1e-11 70.1 83 49.4
Sed0011641 Sechium edule HOM05D000463 ORTHO05D004638 1.6e-10 69.3 83 49.4
Carub.0004s2436 Capsella rubella HOM05D000463 ORTHO05D004638 2.7e-10 68.6 83 47.0
Potri.006G193600 Populus trichocarpa HOM05D000463 ORTHO05D004638 5.9e-10 67.4 87 52.9
Ca_08529_v3 Cicer arietinum L. HOM05D000463 ORTHO05D004638 2.9e-09 65.1 67 50.7
Medtr7g093390 Medicago truncatula HOM05D000463 ORTHO05D004638 2.9e-09 65.1 67 50.7
Glyma.19G148900 Glycine max HOM05D000463 ORTHO05D004638 5.0e-09 64.3 52 59.6
TWI74G1471 Tripterygium wilfordii HOM05D000463 ORTHO05D004638 5.0e-09 64.3 82 46.3
ClCG10G017610 Citrullus lanatus HOM05D000463 ORTHO05D004638 8.5e-09 63.5 83 47.0
TPR.G18218 Trifolium pratense HOM05D000463 ORTHO05D004638 8.5e-09 63.5 63 52.4
TWI77G0981 Tripterygium wilfordii HOM05D000463 ORTHO05D004638 1.1e-08 63.2 82 46.3
Haze_20006 Corylus avellana HOM05D000463 ORTHO05D004638 1.9e-08 62.4 83 44.6
TWI53G0008 Tripterygium wilfordii HOM05D000463 ORTHO05D004638 1.9e-08 62.4 80 47.5
Cfa020154 Carpinus fangiana HOM05D000463 ORTHO05D004638 4.2e-08 61.2 83 47.0
Glyma.03G145700 Glycine max HOM05D000463 ORTHO05D004638 4.2e-08 61.2 48 60.4
Phvul.001G143400 Phaseolus vulgaris HOM05D000463 ORTHO05D004638 4.2e-08 61.2 48 60.4
CANSAT64G1101 Cannabis sativa HOM05D000463 ORTHO05D004638 7.2e-08 60.5 83 47.0
MELO3C009615.2 Cucumis melo HOM05D000463 ORTHO05D004638 9.4e-08 60.1 83 44.6
QL07p024138 Quercus lobata HOM05D000463 ORTHO05D004638 9.4e-08 60.1 82 48.8
VMungo1383G3187 Vigna mungo HOM05D000463 ORTHO05D004638 1.2e-07 59.7 48 58.3
Atru.chr8.1131 Acer truncatum HOM05D000463 ORTHO05D004638 2.1e-07 58.9 86 48.8
CiPaw.09G029500 Carya illinoinensis HOM05D000463 ORTHO05D004638 2.1e-07 58.9 82 41.5
Gorai.007G362400 Gossypium raimondii HOM05D000463 ORTHO05D004638 2.1e-07 58.9 80 45.0
CiPaw.10G025900 Carya illinoinensis HOM05D000463 ORTHO05D004638 2.7e-07 58.5 75 46.7
C03p28070 Brassica napus HOM05D000463 ORTHO05D004638 4.7e-07 57.8 78 43.6
BolC3t15176H Brassica oleracea HOM05D000463 ORTHO05D004638 4.7e-07 57.8 78 43.6
Cpa.g.sc85.55 Carica papaya HOM05D000463 ORTHO05D004638 4.7e-07 57.8 82 40.2
Duzib128G0738 Durio zibethinus HOM05D000463 ORTHO05D004638 6.1e-07 57.4 82 45.1
BraA04t16002Z Brassica rapa HOM05D000463 ORTHO05D004638 8.0e-07 57.0 37 75.7
Psat2g069760 Pisum sativum HOM05D000463 ORTHO05D004638 8.0e-07 57.0 73 41.1
Thecc.05G173700 Theobroma cacao HOM05D000463 ORTHO05D004638 8.0e-07 57.0 82 41.5
Sabra16G0061700 Salix brachista HOM05D000463 ORTHO05D004638 1.0e-06 56.6 83 45.8
COL.COLO4_29337 Corchorus olitorius HOM05D000463 ORTHO05D004638 1.4e-06 56.2 82 42.7
FvH4_6g22060 Fragaria vesca HOM05D000463 ORTHO05D004638 1.4e-06 56.2 82 42.7
FAN02G3128 Fragaria x ananassa HOM05D000463 ORTHO05D004638 1.4e-06 56.2 82 42.7
FAN05G5176 Fragaria x ananassa HOM05D000463 ORTHO05D004638 1.4e-06 56.2 82 42.7
FAN09G1798 Fragaria x ananassa HOM05D000463 ORTHO05D004638 1.4e-06 56.2 82 42.7
FAN09G4131 Fragaria x ananassa HOM05D000463 ORTHO05D004638 1.4e-06 56.2 82 42.7
FAN09G4568 Fragaria x ananassa HOM05D000463 ORTHO05D004638 1.4e-06 56.2 82 42.7
FAN14G0395 Fragaria x ananassa HOM05D000463 ORTHO05D004638 1.4e-06 56.2 82 42.7
CsaV3_3G038710 Cucumis sativus L. HOM05D000463 ORTHO05D004638 2.3e-06 55.5 83 42.2
Gohir.A11G314500 Gossypium hirsutum HOM05D000463 ORTHO05D004638 3.0e-06 55.1 80 43.8
Lalb_Chr15g0079031 Lupinus albus HOM05D000463 ORTHO05D004638 3.0e-06 55.1 53 54.7
Gohir.D11G331600 Gossypium hirsutum HOM05D000463 ORTHO05D004638 6.8e-06 53.9 80 43.8


User provided reference genes

Program Settings