Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52151 Brassica carinata HOM05D033794 ORTHO05D027401 2.9e-76 288.5 148 100.0
C01p05340 Brassica napus HOM05D033794 ORTHO05D027401 1.5e-35 153.3 121 72.7
BolC1t00514H Brassica oleracea HOM05D033794 ORTHO05D027401 5.2e-33 144.8 119 69.7
BcaC05g30547 Brassica carinata HOM05D000239 ORTHO05D001609 1.0e-20 104.0 222 37.4
BcaC09g47908 Brassica carinata HOM05D000239 ORTHO05D001609 5.1e-20 101.7 223 37.7
BNapus_Darmor_BZH_scaffold_118p00030 Brassica napus HOM05D003564 ORTHO05D001609 5.1e-20 101.7 223 37.7
BolC1t05598H Brassica oleracea HOM05D000239 ORTHO05D001609 5.1e-20 101.7 223 37.7
BraA01t04427Z Brassica rapa HOM05D000239 ORTHO05D001609 5.1e-20 101.7 223 37.7
Sp3g05550 Schrenkiella parvula HOM05D000239 ORTHO05D001609 6.6e-20 101.3 221 36.7
A05p41420 Brassica napus HOM05D000239 ORTHO05D001609 1.9e-19 99.8 205 38.0
BraA05t22863Z Brassica rapa HOM05D000239 ORTHO05D001609 5.6e-19 98.2 209 37.3
CARHR081160 Cardamine hirsuta HOM05D000239 ORTHO05D001609 1.6e-18 96.7 221 36.2
BolC5t34722H Brassica oleracea HOM05D000239 ORTHO05D001609 1.5e-16 90.1 210 35.2
Thhalv10020121m.g Eutrema salsugineum HOM05D000239 ORTHO05D001609 3.7e-15 85.5 222 33.3
AL3G17670 Arabidopsis lyrata HOM05D000239 ORTHO05D001609 1.9e-14 83.2 75 60.0
AT3G06620 Arabidopsis thaliana HOM05D000239 ORTHO05D001609 2.4e-14 82.8 75 60.0
Aa31LG5G17180 Aethionema arabicum HOM05D000239 ORTHO05D001609 1.2e-13 80.5 75 60.0
AL3G17690 Arabidopsis lyrata HOM05D000239 ORTHO05D001609 4.6e-13 78.6 219 32.4
AT3G06640 Arabidopsis thaliana HOM05D000239 ORTHO05D001609 3.0e-12 75.9 221 32.1
Carub.0003s0610 Capsella rubella HOM05D000239 ORTHO05D001609 3.9e-12 75.5 66 63.6
Thhalv10020142m.g Eutrema salsugineum HOM05D000239 ORTHO05D001609 2.8e-10 69.3 75 49.3
AT3G06630 Arabidopsis thaliana HOM05D000239 ORTHO05D001609 3.6e-10 68.9 204 30.4
CARHR081170 Cardamine hirsuta HOM05D000239 ORTHO05D001609 3.6e-10 68.9 75 48.0
Aa31LG11G8100 Aethionema arabicum HOM05D000239 ORTHO05D001609 4.7e-10 68.6 81 48.1
Sp3g05570 Schrenkiella parvula HOM05D000239 ORTHO05D001609 1.1e-09 67.4 97 44.3
THA.LOC104818882 Tarenaya hassleriana HOM05D000239 ORTHO05D001609 1.1e-09 67.4 209 31.6
A03p34750 Brassica napus HOM05D000239 ORTHO05D001609 3.1e-09 65.9 64 54.7
BraA03t12656Z Brassica rapa HOM05D000239 ORTHO05D001609 3.1e-09 65.9 64 54.7
CARHR182030 Cardamine hirsuta HOM05D000239 ORTHO05D001609 3.1e-09 65.9 99 43.4
AL3G17680 Arabidopsis lyrata HOM05D000239 ORTHO05D001609 4.0e-09 65.5 64 53.1
AL2G26690 Arabidopsis lyrata HOM05D000239 ORTHO05D001609 5.2e-09 65.1 81 46.9
C03p42290 Brassica napus HOM05D000239 ORTHO05D001609 5.2e-09 65.1 64 54.7
Carub.0002s1438 Capsella rubella HOM05D000239 ORTHO05D001609 5.2e-09 65.1 81 46.9
Carub.0003s0608 Capsella rubella HOM05D000239 ORTHO05D001609 5.2e-09 65.1 60 51.7
AT1G67890 Arabidopsis thaliana HOM05D000239 ORTHO05D001609 6.8e-09 64.7 81 46.9
C03p42270 Brassica napus HOM05D000239 ORTHO05D001609 6.8e-09 64.7 64 53.1
BolC5t34721H Brassica oleracea HOM05D000239 ORTHO05D001609 8.9e-09 64.3 75 46.7
C05p60630 Brassica napus HOM05D003564 ORTHO05D001609 1.2e-08 63.9 75 46.7
AL8G23210 Arabidopsis lyrata HOM05D000239 ORTHO05D001609 1.5e-08 63.5 97 42.3
BcaC09g47910 Brassica carinata HOM05D000239 ORTHO05D001609 1.5e-08 63.5 64 51.6
A05p41410 Brassica napus HOM05D000239 ORTHO05D001609 2.6e-08 62.8 75 46.7
BraA05t22862Z Brassica rapa HOM05D000239 ORTHO05D001609 2.6e-08 62.8 75 46.7
A09p04830 Brassica napus HOM05D000239 ORTHO05D001609 4.4e-08 62.0 64 54.7
BraA09t36120Z Brassica rapa HOM05D000239 ORTHO05D001609 4.4e-08 62.0 64 54.7
BcaC04g23739 Brassica carinata HOM05D000239 ORTHO05D001609 5.8e-08 61.6 64 54.7
C09p05210 Brassica napus HOM05D000239 ORTHO05D001609 5.8e-08 61.6 64 54.7
BolC9t53446H Brassica oleracea HOM05D000239 ORTHO05D001609 5.8e-08 61.6 64 54.7
Sp2g19790 Schrenkiella parvula HOM05D000239 ORTHO05D001609 5.8e-08 61.6 64 53.1
BcaB04g17074 Brassica carinata HOM05D000239 ORTHO05D027401 1.3e-07 60.5 46 65.2
BcaB04g19610 Brassica carinata HOM05D000239 ORTHO05D001609 1.7e-07 60.1 64 53.1
Carub.0008s0933 Capsella rubella HOM05D000239 ORTHO05D001609 2.2e-07 59.7 97 40.2
BNapus_Darmor_BZH_scaffold_118p00020 Brassica napus HOM05D000239 ORTHO05D001609 4.9e-07 58.5 44 70.5
BraA01t04426Z Brassica rapa HOM05D000239 ORTHO05D001609 6.4e-07 58.2 44 70.5
CAN.G484.63 Capsicum annuum HOM05D000239 ORTHO05D001609 1.1e-06 57.4 208 29.3
SpUn0021_0060 Schrenkiella parvula HOM05D000239 ORTHO05D001609 1.1e-06 57.4 219 29.2
CSS0021732 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D001609 1.4e-06 57.0 206 28.6
CSS0034961 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D001609 1.9e-06 56.6 209 27.8
Peaxi162Scf01160g00140 Petunia axillaris HOM05D000239 ORTHO05D001609 4.2e-06 55.5 207 28.5


User provided reference genes

Program Settings