Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 0.0e+00 1347.8 1003 100.0
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 0.0e+00 1186.8 1022 89.1
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 0.0e+00 1179.1 1004 92.4
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 0.0e+00 1176.0 1009 91.8
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 0.0e+00 1161.7 1003 91.1
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 0.0e+00 1161.0 1003 91.1
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 0.0e+00 1120.9 1012 87.3
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 0.0e+00 1107.8 1010 85.1
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 0.0e+00 1107.4 1013 85.0
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 0.0e+00 1107.0 1005 87.2
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 0.0e+00 1084.3 1010 86.1
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 0.0e+00 1080.9 1016 83.3
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 0.0e+00 1079.7 1020 85.1
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 1.6e-298 1029.6 1021 81.6
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 3.9e-289 998.4 1034 78.2
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 9.6e-248 860.9 1032 67.4
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 1.7e-236 823.5 938 72.0
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 2.7e-234 816.2 892 74.1
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 7.9e-234 814.7 930 71.2
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 6.3e-231 805.1 938 71.2
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 1.1e-230 804.3 930 71.1
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 1.7e-228 797.0 889 73.6
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 2.1e-226 790.0 887 72.6
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 2.1e-226 790.0 887 72.6
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 2.7e-226 789.6 887 72.3
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 1.2e-210 737.6 888 71.1
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 4.5e-205 719.2 1047 62.4
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 7.2e-203 711.8 915 68.2
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 9.8e-200 701.4 917 62.5
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 1.3e-199 701.0 917 62.3
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 8.3e-199 698.4 903 69.3
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 3.1e-198 696.4 1030 63.5
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 2.0e-197 693.7 1031 56.5
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.7e-197 693.3 917 66.1
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 1.0e-196 691.4 1034 64.5
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.7e-196 690.6 903 68.0
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.2e-195 686.0 909 67.7
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 4.7e-194 682.6 1019 58.7
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.3e-193 680.2 1034 60.1
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 4.0e-193 679.5 1023 63.1
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 4.4e-192 676.0 1039 60.2
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 4.4e-192 676.0 917 67.7
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.1e-190 671.4 1029 62.6
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 1.4e-190 671.0 1022 59.9
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 9.2e-190 668.3 909 68.0
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 5.0e-188 662.5 1015 60.4
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.1e-187 661.4 895 68.3
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 1.5e-187 661.0 1004 62.1
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.9e-187 660.6 1015 60.3
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 1.8e-185 654.1 917 67.5
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 2.3e-185 653.7 1035 54.9
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 3.1e-185 653.3 1034 51.4
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.5e-184 651.0 989 61.9
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 2.0e-184 650.6 930 58.5
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 7.5e-184 648.7 890 65.5
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 9.8e-184 648.3 1023 59.9
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 2.2e-183 647.1 1036 60.6
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 4.9e-183 646.0 896 67.6
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 4.9e-183 646.0 885 67.2
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 1.1e-182 644.8 886 67.9
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 5.4e-182 642.5 1116 53.9
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 1.6e-181 641.0 916 65.7
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 2.0e-181 640.6 898 61.0
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 2.3e-180 637.1 929 63.6
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 2.3e-180 637.1 806 72.5
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 6.6e-180 635.6 881 68.2
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 1.5e-179 634.4 1010 60.4
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 1.9e-179 634.0 897 66.0
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 4.3e-179 632.9 891 65.4
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 5.6e-179 632.5 1014 54.8
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.2e-178 631.3 890 63.5
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 1.6e-178 630.9 806 66.9
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.6e-178 630.9 1007 62.4
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.6e-178 630.9 803 72.0
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 2.1e-178 630.6 913 65.7
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.8e-178 630.2 947 62.3
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 3.6e-178 629.8 908 66.9
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 4.7e-178 629.4 888 64.4
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 1.4e-177 627.9 893 68.8
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 6.8e-177 625.5 917 65.2
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 7.5e-176 622.1 812 68.7
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 1.3e-175 621.3 884 64.8
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 2.2e-175 620.5 773 71.8
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 2.9e-175 620.2 922 60.1
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 2.9e-175 620.2 1002 56.9
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 8.3e-175 618.6 879 56.0
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.4e-174 617.8 890 66.2
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 1.9e-174 617.5 902 64.1
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.4e-174 617.1 890 66.2
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 3.2e-174 616.7 876 64.4
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 5.4e-174 615.9 890 64.0
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 9.2e-174 615.1 1008 54.8
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.6e-173 614.4 974 64.4
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.6e-173 614.4 892 57.0
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 2.1e-173 614.0 897 62.9
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 3.5e-173 613.2 821 66.9
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 4.6e-173 612.8 802 70.2
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 1.1e-171 608.2 913 62.1
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 9.5e-171 605.1 806 68.2
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 2.1e-170 604.0 799 70.3
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 8.1e-170 602.1 803 70.1
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.1e-169 601.7 888 64.9
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.8e-169 600.9 892 64.2
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 3.1e-169 600.1 879 64.7
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 4.0e-169 599.7 802 68.0
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 1.2e-168 598.2 881 64.4
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.2e-168 598.2 880 66.0
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 1.7e-167 594.3 804 63.3
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 2.9e-167 593.6 799 67.7
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 4.9e-167 592.8 804 63.3
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 8.3e-167 592.0 807 60.6
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 1.1e-166 591.7 896 59.3
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 2.4e-166 590.5 944 59.4
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 5.4e-166 589.3 807 64.1
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 2.7e-165 587.0 804 64.7
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 2.7e-165 587.0 859 65.7
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 4.6e-165 586.3 1015 55.2
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 1.9e-163 580.9 879 61.0
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 3.3e-163 580.1 795 68.9
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 5.2e-161 572.8 802 67.2
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 2.0e-160 570.9 802 69.5
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 5.8e-160 569.3 1020 54.5
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 3.8e-159 566.6 801 67.2
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.1e-158 565.1 1015 56.8
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.7e-156 557.8 782 66.9
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 3.0e-156 557.0 767 64.0
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 9.9e-152 542.0 802 56.9
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 6.4e-151 539.3 847 56.9
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 1.1e-150 538.5 891 53.8
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 5.4e-150 536.2 801 63.8
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 8.4e-143 512.3 1011 49.6
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.1e-139 501.9 850 61.2
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.1e-139 501.9 902 57.0
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 2.8e-138 497.3 685 76.1
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 2.6e-136 490.7 1001 49.4
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 7.1e-134 482.6 740 60.3
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 1.0e-132 478.8 797 63.6
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 2.8e-130 470.7 786 59.2
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 2.8e-130 470.7 850 57.5
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 9.0e-129 465.7 684 64.3
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 5.0e-127 459.9 809 60.3
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 1.8e-121 441.4 779 47.4
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 5.0e-111 406.8 727 57.8
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 9.4e-110 402.5 891 48.6
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.9e-108 397.1 840 46.7
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 8.2e-106 389.4 899 46.9
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 4.5e-104 383.6 649 71.3
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 1.2e-101 375.6 796 50.1
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.5e-99 368.6 822 54.9
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 3.0e-92 344.4 674 54.5
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.6e-88 332.0 906 44.8
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 7.2e-86 323.2 929 46.9
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 7.2e-86 323.2 294 58.2
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 2.0e-83 315.1 647 67.9
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 5.9e-80 303.5 747 47.5
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.5e-78 298.9 393 54.7
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 3.3e-78 297.7 436 62.8
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 4.2e-78 297.4 436 48.9
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 5.2e-76 290.4 421 50.4
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 8.6e-71 273.1 660 52.6
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 7.3e-70 270.0 605 58.8
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 1.6e-64 252.3 260 63.8
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 2.7e-64 251.5 489 41.9
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 2.5e-54 218.4 221 52.9
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 9.6e-46 189.9 135 69.6
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 8.1e-45 186.8 311 68.5
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 4.2e-41 174.5 207 45.4
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.8e-36 159.1 200 46.5
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 2.1e-29 135.6 88 76.1
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 2.6e-27 128.6 123 56.1
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 7.6e-27 127.1 71 83.1
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 2.9e-26 125.2 119 56.3
C01p05870 Brassica napus HOM05D000903 ORTHO05D000731 8.4e-26 123.6 135 63.0
BcaC01g01003 Brassica carinata HOM05D003722 ORTHO05D004589 6.5e-18 97.4 149 52.3
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 1.9e-14 85.9 226 79.6
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 4.5e-11 74.7 62 56.5
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 1.0e-10 73.6 189 31.7
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 8.4e-10 70.5 66 57.6


User provided reference genes

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