Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52123 Brassica carinata HOM05D006415 ORTHO05D008549 2.5e-37 158.3 82 100.0
BcaC09g52124 Brassica carinata HOM05D006415 ORTHO05D008549 1.6e-28 129.0 68 95.6
A01p05010 Brassica napus HOM05D006415 ORTHO05D008549 1.1e-24 116.3 68 85.3
BraA01t00483Z Brassica rapa HOM05D006415 ORTHO05D008549 1.1e-24 116.3 68 85.3
BcaC09g52125 Brassica carinata HOM05D006415 ORTHO05D008549 2.4e-24 115.2 68 83.8
C01p05460 Brassica napus HOM05D006415 ORTHO05D008549 2.4e-24 115.2 68 83.8
BolC1t00526H Brassica oleracea HOM05D006415 ORTHO05D008549 2.4e-24 115.2 68 83.8
Thhalv10025320m.g Eutrema salsugineum HOM05D006415 ORTHO05D008549 4.8e-20 100.9 68 73.5
AL7G18390 Arabidopsis lyrata HOM05D006415 ORTHO05D008549 1.1e-19 99.8 68 72.1
AT4G33160 Arabidopsis thaliana HOM05D006415 ORTHO05D008549 1.0e-17 93.2 68 66.2
Sp7g30910 Schrenkiella parvula HOM05D006415 ORTHO05D008549 8.4e-17 90.1 68 69.1
CARHR241190 Cardamine hirsuta HOM05D006415 ORTHO05D008549 2.5e-16 88.6 65 69.2
Carub.0007s0729 Capsella rubella HOM05D006415 ORTHO05D008549 1.3e-14 82.8 68 60.3
BcaNung02157 Brassica carinata HOM05D006415 ORTHO05D008549 1.5e-13 79.3 71 60.6
THA.LOC104803713 Tarenaya hassleriana HOM05D006415 ORTHO05D008549 1.4e-11 72.8 68 54.4
A03p61850 Brassica napus HOM05D006415 ORTHO05D008549 3.1e-11 71.6 63 63.5
BcaNung02156 Brassica carinata HOM05D006415 ORTHO05D008549 4.0e-11 71.2 63 63.5
C07p59530 Brassica napus HOM05D006415 ORTHO05D008549 4.0e-11 71.2 63 63.5
BolC7t46397H Brassica oleracea HOM05D006415 ORTHO05D008549 4.0e-11 71.2 63 63.5
Cc08_g07830 Coffea canephora HOM05D006415 ORTHO05D008549 4.0e-11 71.2 62 56.5
HPP92_028258 Vanilla planifolia HOM05D006415 ORTHO05D008549 2.0e-10 68.9 65 58.5
VMungo0647G0664 Vigna mungo HOM05D006415 ORTHO05D008549 2.0e-10 68.9 57 59.6
Glyma.14G105800 Glycine max HOM05D006415 ORTHO05D008549 3.4e-10 68.2 57 59.6
Manes.16G088100 Manihot esculenta HOM05D006415 ORTHO05D008549 3.4e-10 68.2 61 57.4
SalBow4G3237 Salvia bowleyana HOM05D006415 ORTHO05D008549 3.4e-10 68.2 47 68.1
MD08G1047200 Malus domestica HOM05D006415 ORTHO05D008549 4.5e-10 67.8 64 57.8
Migut.A00333 Erythranthe guttata HOM05D006415 ORTHO05D008549 5.8e-10 67.4 39 76.9
Prupe.1G401100 Prunus persica HOM05D006415 ORTHO05D008549 5.8e-10 67.4 63 58.7
Glyma.17G220600 Glycine max HOM05D006415 ORTHO05D008549 1.3e-09 66.2 57 59.6
Nitab4.5_0000508g0110 Nicotiana tabacum HOM05D006415 ORTHO05D008549 1.3e-09 66.2 59 57.6
TWI34G1185 Tripterygium wilfordii HOM05D006415 ORTHO05D008549 1.7e-09 65.9 63 52.4
Atru.chr7.1810 Acer truncatum HOM05D006415 ORTHO05D008549 2.2e-09 65.5 63 52.4
Ciclev10010172m.g Citrus clementina HOM05D006415 ORTHO05D008549 2.2e-09 65.5 65 53.8
Gohir.A05G037600 Gossypium hirsutum HOM05D006415 ORTHO05D008549 2.2e-09 65.5 63 55.6
Phvul.001G043800 Phaseolus vulgaris HOM05D006415 ORTHO05D008549 2.2e-09 65.5 57 57.9
Psat6g024360 Pisum sativum HOM05D006415 ORTHO05D008549 2.2e-09 65.5 57 57.9
CANSAT25G1574 Cannabis sativa HOM05D006415 ORTHO05D008549 3.8e-09 64.7 66 50.0
Cpa.g.sc82.23 Carica papaya HOM05D006415 ORTHO05D008549 3.8e-09 64.7 66 50.0
Oeu001617.1 Olea europaea HOM05D006415 ORTHO05D008549 3.8e-09 64.7 39 74.4
Solyc08g067300.1 Solanum lycopersicum HOM05D006415 ORTHO05D008549 5.0e-09 64.3 39 74.4
Sopen08g021230 Solanum pennellii HOM05D006415 ORTHO05D008549 5.0e-09 64.3 57 59.6
PGSC0003DMG400007376 Solanum tuberosum HOM05D006415 ORTHO05D008549 5.0e-09 64.3 57 57.9
TPR.G38916 Trifolium pratense HOM05D006415 ORTHO05D008549 5.0e-09 64.3 57 56.1
Ca_13084_v3 Cicer arietinum L. HOM05D006415 ORTHO05D008549 6.5e-09 63.9 39 71.8
Haze_18364 Corylus avellana HOM05D006415 ORTHO05D008549 6.5e-09 63.9 57 56.1
Lalb_Chr11g0063431 Lupinus albus HOM05D006415 ORTHO05D008549 6.5e-09 63.9 62 46.8
Peaxi162Scf00922g00001 Petunia axillaris HOM05D006415 ORTHO05D008549 6.5e-09 63.9 58 53.4
GSVIVG01035605001 Vitis vinifera HOM05D006415 ORTHO05D008549 8.4e-09 63.5 39 71.8
Duzib150G0932 Durio zibethinus HOM05D006415 ORTHO05D008549 1.1e-08 63.2 63 52.4
MD15G1046700 Malus domestica HOM05D006415 ORTHO05D008549 1.1e-08 63.2 64 54.7
Aqoxy7G00937 Aquilegia oxysepala HOM05D006415 ORTHO05D008549 1.4e-08 62.8 63 54.0
Cfa017844 Carpinus fangiana HOM05D006415 ORTHO05D008549 1.4e-08 62.8 57 56.1
COL.COLO4_21174 Corchorus olitorius HOM05D006415 ORTHO05D008549 1.4e-08 62.8 60 51.7
Gohir.D05G039100 Gossypium hirsutum HOM05D006415 ORTHO05D008549 1.4e-08 62.8 63 54.0
Gorai.009G039600 Gossypium raimondii HOM05D006415 ORTHO05D008549 1.4e-08 62.8 63 54.0
Manes.03G055400 Manihot esculenta HOM05D006415 ORTHO05D008549 1.4e-08 62.8 63 54.0
Medtr1g014700 Medicago truncatula HOM05D006415 ORTHO05D008549 1.4e-08 62.8 45 62.2
Thecc.09G066900 Theobroma cacao HOM05D006415 ORTHO05D008549 1.4e-08 62.8 44 63.6
Duzib168G1156 Durio zibethinus HOM05D006415 ORTHO05D008549 1.9e-08 62.4 63 52.4
Nitab4.5_0006583g0010 Nicotiana tabacum HOM05D006415 ORTHO05D008549 3.2e-08 61.6 57 56.1
CsaV3_4G036270 Cucumis sativus L. HOM05D006415 ORTHO05D008549 4.2e-08 61.2 60 51.7
FAN27G3353 Fragaria x ananassa HOM05D006415 ORTHO05D008549 4.2e-08 61.2 66 51.5
Potri.006G217500 Populus trichocarpa HOM05D006415 ORTHO05D008549 4.2e-08 61.2 65 50.8
TWI32G1144 Tripterygium wilfordii HOM05D006415 ORTHO05D008549 4.2e-08 61.2 63 50.8
HPP92_002171 Vanilla planifolia HOM05D006415 ORTHO05D008549 4.2e-08 61.2 57 52.6
FAN20G2635 Fragaria x ananassa HOM05D006415 ORTHO05D008549 7.1e-08 60.5 63 52.4
SGA_v2.0_scaffold22G09921 Striga asiatica HOM05D006415 ORTHO05D008549 7.1e-08 60.5 63 52.4
VMungo1309G0251 Vigna mungo HOM05D006415 ORTHO05D008549 7.1e-08 60.5 62 46.8
CAN.G1399.1 Capsicum annuum HOM05D006415 ORTHO05D008549 9.3e-08 60.1 59 54.2
Lj1g0019769 Lotus japonicus HOM05D006415 ORTHO05D008549 9.3e-08 60.1 57 52.6
Nn6g35727 Nelumbo nucifera HOM05D006415 ORTHO05D008549 9.3e-08 60.1 57 54.4
Sed0001226 Sechium edule HOM05D006415 ORTHO05D008549 9.3e-08 60.1 65 50.8
Lj5g0026617 Lotus japonicus HOM05D006415 ORTHO05D008549 1.2e-07 59.7 45 62.2
Phvul.009G084700 Phaseolus vulgaris HOM05D006415 ORTHO05D008549 1.2e-07 59.7 62 46.8
RcHm_v2.0_Chr6g0304701 Rosa chinensis HOM05D006415 ORTHO05D008549 1.2e-07 59.7 63 52.4
arahy.Tifrunner.gnm1.ann1.4JU4D9 Arachis hypogaea HOM05D006415 ORTHO05D008549 1.6e-07 59.3 39 66.7
arahy.Tifrunner.gnm1.ann1.FB4QQZ Arachis hypogaea HOM05D006415 ORTHO05D008549 1.6e-07 59.3 44 61.4
Glyma.04G058200 Glycine max HOM05D006415 ORTHO05D008549 1.6e-07 59.3 44 56.8
Lalb_Chr08g0244601 Lupinus albus HOM05D006415 ORTHO05D008549 1.6e-07 59.3 44 59.1
ClCG05G015980 Citrullus lanatus HOM05D006415 ORTHO05D008549 2.1e-07 58.9 60 50.0
Duzib187G1400 Durio zibethinus HOM05D006415 ORTHO05D008549 2.1e-07 58.9 63 49.2
Glyma.06G058900 Glycine max HOM05D006415 ORTHO05D008549 2.7e-07 58.5 62 46.8
Sabra06G0167700 Salix brachista HOM05D006415 ORTHO05D008549 2.7e-07 58.5 63 50.8
MELO3C016934.2 Cucumis melo HOM05D006415 ORTHO05D008549 3.5e-07 58.2 60 50.0
Eucgr.C00751 Eucalyptus grandis HOM05D006415 ORTHO05D008549 3.5e-07 58.2 63 47.6
Sed0020634 Sechium edule HOM05D006415 ORTHO05D008549 3.5e-07 58.2 61 50.8
TAR624G0622 Trochodendron aralioides HOM05D006415 ORTHO05D008549 3.5e-07 58.2 58 53.4
Lalb_Chr14g0375431 Lupinus albus HOM05D006415 ORTHO05D008549 4.6e-07 57.8 40 60.0
PSO104G0181 Papaver somniferum HOM05D006415 ORTHO05D008549 6.1e-07 57.4 63 49.2
Gohir.A13G188500 Gossypium hirsutum HOM05D006415 ORTHO05D008549 7.9e-07 57.0 42 61.9
Gohir.D13G195500 Gossypium hirsutum HOM05D006415 ORTHO05D008549 7.9e-07 57.0 42 61.9
Gorai.013G221600 Gossypium raimondii HOM05D006415 ORTHO05D008549 7.9e-07 57.0 42 61.9
Nn8g38521 Nelumbo nucifera HOM05D006415 ORTHO05D008549 1.0e-06 56.6 65 52.3
CiPaw.16G071700 Carya illinoinensis HOM05D006415 ORTHO05D008549 1.3e-06 56.2 62 50.0
PSO421G0401 Papaver somniferum HOM05D006415 ORTHO05D008549 1.3e-06 56.2 64 50.0
PGR142G2209 Punica granatum HOM05D006415 ORTHO05D008549 1.3e-06 56.2 57 54.4
CDE05G3122 Ceratophyllum demersum HOM05D000036 ORTHO05D008549 1.8e-06 55.8 63 42.9
FvH4_2g37090 Fragaria vesca HOM05D006415 ORTHO05D008549 2.3e-06 55.5 63 50.8
CDE05G2859 Ceratophyllum demersum HOM05D006415 ORTHO05D008549 6.7e-06 53.9 58 44.8
PSO339G3229 Papaver somniferum HOM05D006415 ORTHO05D008549 8.7e-06 53.5 64 46.9


User provided reference genes

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