Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 4.7e-99 364.4 168 100.0
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 2.0e-97 359.0 168 98.2
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 2.0e-97 359.0 168 98.2
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 3.4e-97 358.2 168 97.6
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 3.4e-97 358.2 168 98.2
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 3.4e-97 358.2 168 97.6
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 5.8e-97 357.5 168 97.6
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 1.4e-95 352.8 168 95.8
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 5.4e-95 350.9 168 95.8
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 9.3e-95 350.1 178 92.1
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 9.3e-95 350.1 168 94.6
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 9.3e-95 350.1 168 95.2
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 4.6e-94 347.8 168 94.6
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 2.6e-89 332.0 168 89.9
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 4.9e-88 327.8 168 89.9
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 4.3e-76 288.1 136 95.6
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 6.5e-72 274.2 126 96.8
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 4.2e-71 271.6 168 75.0
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 1.3e-69 266.5 168 71.4
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 3.0e-69 265.4 168 70.8
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 6.7e-69 264.2 168 70.2
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 1.5e-68 263.1 168 71.4
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 1.5e-68 263.1 167 70.1
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 3.3e-68 261.9 168 69.6
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 4.3e-68 261.5 168 70.2
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 4.3e-68 261.5 168 69.6
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 4.3e-68 261.5 168 71.4
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 4.3e-68 261.5 168 70.2
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 5.7e-68 261.2 168 69.6
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 7.4e-68 260.8 168 70.2
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 9.6e-68 260.4 168 68.5
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 9.6e-68 260.4 168 69.0
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 1.3e-67 260.0 168 70.8
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 1.3e-67 260.0 168 70.2
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 2.1e-67 259.2 168 68.5
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.7e-67 258.5 168 70.2
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 6.3e-67 257.7 168 70.2
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 6.3e-67 257.7 168 70.2
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 6.3e-67 257.7 168 70.2
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 1.4e-66 256.5 168 68.5
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 1.8e-66 256.1 168 69.0
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 2.4e-66 255.8 168 69.0
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 5.3e-66 254.6 168 70.2
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 6.9e-66 254.2 168 68.5
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 6.9e-66 254.2 168 68.5
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 6.9e-66 254.2 168 67.3
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 9.0e-66 253.8 165 69.1
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 1.2e-65 253.4 168 67.3
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 2.6e-65 252.3 168 67.3
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 4.5e-65 251.5 168 66.7
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 5.9e-65 251.1 165 68.5
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 5.9e-65 251.1 168 68.5
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 2.2e-64 249.2 168 68.5
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 2.2e-64 249.2 168 68.5
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 2.9e-64 248.8 168 68.5
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 3.8e-64 248.4 168 66.7
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 3.8e-64 248.4 168 66.7
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 8.4e-64 247.3 175 66.9
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 1.1e-63 246.9 168 66.7
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 1.4e-63 246.5 165 69.1
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.9e-63 246.1 168 67.9
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 2.5e-63 245.7 168 66.1
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 3.2e-63 245.4 168 67.9
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 3.2e-63 245.4 168 66.1
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 4.2e-63 245.0 168 67.3
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 4.2e-63 245.0 167 67.1
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 7.2e-63 244.2 168 66.7
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 1.2e-62 243.4 167 65.9
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 2.1e-62 242.7 165 67.9
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 6.1e-62 241.1 168 64.3
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 6.1e-62 241.1 168 64.3
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 6.1e-62 241.1 165 63.6
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 7.9e-62 240.7 168 64.3
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 7.9e-62 240.7 168 66.7
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 1.0e-61 240.4 167 64.1
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.3e-61 240.0 168 64.9
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 6.7e-61 237.7 168 62.5
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 6.7e-61 237.7 167 62.9
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 6.7e-61 237.7 168 63.7
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.1e-60 236.9 167 63.5
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 1.5e-60 236.5 167 62.9
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 1.9e-60 236.1 168 66.7
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 2.5e-60 235.7 168 63.1
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 3.3e-60 235.3 168 66.1
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 5.7e-60 234.6 168 64.9
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 5.7e-60 234.6 168 64.9
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 7.4e-60 234.2 190 59.5
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 7.4e-60 234.2 165 66.1
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 2.2e-59 232.6 168 62.5
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.8e-59 232.3 160 63.8
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 3.7e-59 231.9 165 64.2
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 6.3e-59 231.1 168 63.7
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 8.2e-59 230.7 168 66.1
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 6.9e-58 227.6 168 62.5
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 1.5e-57 226.5 168 60.1
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 2.0e-57 226.1 220 50.5
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 2.0e-57 226.1 168 62.5
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.6e-57 225.7 180 58.3
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 6.5e-56 221.1 190 57.4
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 8.5e-56 220.7 168 61.9
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 1.2e-54 216.9 167 59.9
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 2.7e-54 215.7 165 60.6
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 1.8e-53 213.0 168 57.1
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 2.3e-53 212.6 204 51.5
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.5e-52 209.9 190 53.2
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 5.7e-52 208.0 167 58.7
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.4e-50 203.4 126 69.8
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 1.4e-50 203.4 131 67.2
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 2.2e-48 196.1 138 64.5
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.8e-48 195.3 176 52.3
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 6.5e-48 194.5 167 55.7
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 1.1e-47 193.7 183 57.9
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.0e-45 187.2 179 48.6
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 1.8e-45 186.4 168 51.8
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 1.1e-44 183.7 168 51.8
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 1.5e-44 183.3 127 64.6
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 1.8e-42 176.4 165 52.7
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 9.1e-42 174.1 168 51.2
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 2.6e-41 172.6 116 65.5
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 2.5e-39 166.0 166 49.4
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 4.7e-38 161.8 179 45.8
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 1.4e-37 160.2 165 50.3
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 2.3e-37 159.5 169 46.7
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 6.7e-37 157.9 168 48.2
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 1.1e-36 157.1 165 49.7
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 5.7e-36 154.8 99 71.7
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.3e-35 153.7 151 51.7
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.3e-35 153.7 147 51.7
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 3.7e-35 152.1 117 59.8
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.3e-35 151.4 135 52.6
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.1e-34 150.6 134 53.0
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 7.0e-34 147.9 131 56.5
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.0e-32 144.1 131 51.9
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 4.2e-31 138.7 128 49.2
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 7.2e-31 137.9 98 61.2
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 7.2e-31 137.9 98 61.2
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 1.7e-27 126.7 98 58.2
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 5.0e-24 115.2 165 37.6
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 7.2e-23 111.3 98 60.2
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 7.2e-23 111.3 165 36.4
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 6.1e-22 108.2 127 40.9
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 1.4e-21 107.1 111 49.5
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 3.0e-21 105.9 78 59.0
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.2e-20 104.0 95 51.6
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 1.2e-17 94.0 75 61.3
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 1.1e-15 87.4 42 100.0
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 7.3e-15 84.7 41 97.6
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 1.6e-14 83.6 170 32.4
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 8.9e-13 77.8 117 32.5
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 2.0e-12 76.6 104 37.5
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.4e-12 75.9 65 52.3
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.4e-12 75.9 65 52.3
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.7e-12 75.1 68 50.0
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.7e-11 73.6 60 55.0
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.2e-10 69.3 60 53.3
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.1e-10 68.9 65 49.2
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.2e-10 67.8 65 47.7
COL.COLO4_30599 Corchorus olitorius HOM05D004267 ORTHO05D044750 2.7e-09 66.2 170 30.0
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 5.9e-09 65.1 45 62.2
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 8.6e-08 61.2 86 36.0
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 4.7e-06 55.5 40 62.5


User provided reference genes

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