Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52083 Brassica carinata HOM05D008625 ORTHO05D010623 7.3e-104 380.6 193 100.0
C01p06020 Brassica napus HOM05D008625 ORTHO05D010623 7.3e-104 380.6 193 100.0
BolC1t00594H Brassica oleracea HOM05D008625 ORTHO05D010623 5.3e-102 374.4 194 98.5
A01p05420 Brassica napus HOM05D008625 ORTHO05D010623 4.9e-100 367.9 194 97.4
BraA01t00516Z Brassica rapa HOM05D008625 ORTHO05D010623 4.9e-100 367.9 194 97.4
BcaC09g52084 Brassica carinata HOM05D008625 ORTHO05D010623 4.8e-95 351.3 194 93.3
A03p61610 Brassica napus HOM05D008625 ORTHO05D010623 8.2e-87 323.9 196 84.7
C07p59370 Brassica napus HOM05D008625 ORTHO05D010623 1.8e-86 322.8 196 84.7
BolC7t46381H Brassica oleracea HOM05D008625 ORTHO05D010623 1.8e-86 322.8 196 84.7
BraA03t15203Z Brassica rapa HOM05D008625 ORTHO05D010623 4.0e-86 321.6 196 84.2
BcaNung06387 Brassica carinata HOM05D008625 ORTHO05D010623 2.9e-84 315.5 191 85.3
A08p17870 Brassica napus HOM05D008625 ORTHO05D010623 1.4e-83 313.2 196 84.7
BraA08t33739Z Brassica rapa HOM05D008625 ORTHO05D010623 1.4e-83 313.2 196 84.7
Sp7g30630 Schrenkiella parvula HOM05D008625 ORTHO05D010623 3.2e-83 312.0 198 84.8
C03p86970 Brassica napus HOM05D008625 ORTHO05D010623 2.1e-82 309.3 191 84.8
C03p86990 Brassica napus HOM05D008625 ORTHO05D010623 2.1e-82 309.3 191 84.8
BolC3t20994H Brassica oleracea HOM05D008625 ORTHO05D010623 2.7e-82 308.9 196 83.7
CARHR240860 Cardamine hirsuta HOM05D008625 ORTHO05D010623 2.7e-82 308.9 197 83.2
Thhalv10026293m.g Eutrema salsugineum HOM05D008625 ORTHO05D010623 8.7e-81 303.9 198 81.8
AT4G32860 Arabidopsis thaliana HOM05D008625 ORTHO05D010623 1.4e-78 296.6 200 80.0
AL7G18860 Arabidopsis lyrata HOM05D008625 ORTHO05D010623 4.5e-77 291.6 194 79.9
Carub.0007s0763 Capsella rubella HOM05D008625 ORTHO05D010623 1.2e-74 283.5 201 77.6
Aa31sc706G10 Aethionema arabicum HOM05D008625 ORTHO05D010623 5.1e-73 278.1 202 72.8
BcaB03g12766 Brassica carinata HOM05D008625 ORTHO05D010623 2.2e-71 272.7 194 74.7
THA.LOC104803750 Tarenaya hassleriana HOM05D008625 ORTHO05D010623 5.2e-49 198.4 186 61.8
THA.LOC104804518 Tarenaya hassleriana HOM05D008625 ORTHO05D010623 1.6e-26 123.6 128 56.2
Cpa.g.sc7.202 Carica papaya HOM05D008625 ORTHO05D010623 2.3e-17 93.2 181 37.6
Medtr3g109920 Medicago truncatula HOM05D008625 ORTHO05D010623 4.4e-16 89.0 182 35.7
Medtr3g109900 Medicago truncatula HOM05D008625 ORTHO05D010623 1.3e-15 87.4 182 35.2
Thecc.09G047000 Theobroma cacao HOM05D001131 ORTHO05D010623 1.1e-14 84.3 196 34.2
TPR.G15108 Trifolium pratense HOM05D008625 ORTHO05D010623 1.1e-14 84.3 173 37.0
Glyma.04G085800 Glycine max HOM05D008625 ORTHO05D010623 2.4e-14 83.2 185 32.4
arahy.Tifrunner.gnm1.ann1.66V3J9 Arachis hypogaea HOM05D008625 ORTHO05D010623 3.2e-14 82.8 194 35.1
Glyma.06G087400 Glycine max HOM05D008625 ORTHO05D010623 3.2e-14 82.8 188 35.1
Psat5g020400 Pisum sativum HOM05D008625 ORTHO05D010623 3.2e-14 82.8 178 35.4
VMungo1309G2682 Vigna mungo HOM05D008625 ORTHO05D010623 5.4e-14 82.0 144 38.9
Psat5g020440 Pisum sativum HOM05D008625 ORTHO05D010623 1.2e-13 80.9 182 33.5
Ca_15580_v3 Cicer arietinum L. HOM05D008625 ORTHO05D010623 2.7e-13 79.7 142 40.1
Phvul.009G111200 Phaseolus vulgaris HOM05D008625 ORTHO05D010623 6.0e-13 78.6 146 39.0
GSVIVG01035287001 Vitis vinifera HOM05D001131 ORTHO05D000972 6.0e-13 78.6 218 32.6
MD08G1111800 Malus domestica HOM05D008625 ORTHO05D010623 2.3e-12 76.6 205 32.2
Gohir.A06G092000 Gossypium hirsutum HOM05D001131 ORTHO05D010623 3.0e-12 76.3 213 33.8
CANSAT25G2493 Cannabis sativa HOM05D008625 ORTHO05D010623 5.1e-12 75.5 217 32.7
MD15G1091300 Malus domestica HOM05D001131 ORTHO05D010623 5.1e-12 75.5 207 31.4
Gorai.010G105500 Gossypium raimondii HOM05D001131 ORTHO05D010623 6.6e-12 75.1 219 32.9
Gohir.D06G091500 Gossypium hirsutum HOM05D001131 ORTHO05D010623 8.6e-12 74.7 219 32.9
COL.COLO4_20990 Corchorus olitorius HOM05D001131 ORTHO05D010623 2.5e-11 73.2 209 34.4
Ciclev10009617m.g Citrus clementina HOM05D001131 ORTHO05D000972 5.6e-11 72.0 208 31.7
Lj1g0026047 Lotus japonicus HOM05D008625 ORTHO05D010623 7.3e-11 71.6 180 32.2
Atru.chr7.2063 Acer truncatum HOM05D001131 ORTHO05D000972 1.2e-10 70.9 204 33.3
Potri.006G236700 Populus trichocarpa HOM05D001131 ORTHO05D000972 1.2e-10 70.9 217 28.6
Prupe.1G446200 Prunus persica HOM05D001131 ORTHO05D010623 1.6e-10 70.5 206 33.0
Sabra06G0185000 Salix brachista HOM05D001131 ORTHO05D000972 1.6e-10 70.5 224 29.5
Manes.16G074200 Manihot esculenta HOM05D001131 ORTHO05D000972 4.7e-10 68.9 229 27.5
Potri.018G046500 Populus trichocarpa HOM05D001131 ORTHO05D000972 4.7e-10 68.9 220 29.1
Sabra18G0045000 Salix brachista HOM05D001131 ORTHO05D000972 8.1e-10 68.2 180 32.2
Nn8g39098 Nelumbo nucifera HOM05D001131 ORTHO05D000972 1.4e-09 67.4 213 28.2
TWI63G1453 Tripterygium wilfordii HOM05D001131 ORTHO05D000972 2.3e-09 66.6 204 30.9
Lalb_Chr08g0242961 Lupinus albus HOM05D008625 ORTHO05D010623 5.2e-09 65.5 188 30.9
TAR624G0151 Trochodendron aralioides HOM05D001131 ORTHO05D000972 8.9e-09 64.7 203 28.6
FAN15G2009 Fragaria x ananassa HOM05D008625 ORTHO05D010623 2.0e-08 63.5 172 32.6
CSS0013249 Camellia sinensis var. sinensis HOM05D001131 ORTHO05D000972 2.6e-08 63.2 196 30.1
FAN20G1640 Fragaria x ananassa HOM05D008625 ORTHO05D010623 2.6e-08 63.2 172 32.6
RcHm_v2.0_Chr6g0306461 Rosa chinensis HOM05D008625 ORTHO05D010623 9.9e-08 61.2 173 31.2
Manes.03G059800 Manihot esculenta HOM05D001131 ORTHO05D000972 1.3e-07 60.8 230 27.4
SalBow5G1205 Salvia bowleyana HOM05D001131 ORTHO05D000972 3.7e-07 59.3 181 28.2
Hma1.2p1_0945F.1_g240300 Hydrangea macrophylla HOM05D001131 ORTHO05D000972 6.4e-07 58.5 203 27.6
DCAR_032098 Daucus carota HOM05D001131 ORTHO05D000972 8.4e-07 58.2 194 30.4
FvH4_2g35430 Fragaria vesca HOM05D008625 ORTHO05D010623 2.4e-06 56.6 174 31.6
Rhsim05G0041000 Rhododendron simsii HOM05D001131 ORTHO05D000972 4.1e-06 55.8 207 27.1
Medtr8g102660 Medicago truncatula HOM05D001131 ORTHO05D000972 7.1e-06 55.1 200 31.5
FAN27G2073 Fragaria x ananassa HOM05D008625 ORTHO05D010623 9.2e-06 54.7 174 31.0


User provided reference genes

Program Settings