Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 3661.3 1857 100.0
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 3532.3 1856 96.0
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 3508.4 1856 96.0
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 3484.1 1885 94.3
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 3467.6 1886 93.4
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 3271.9 1860 89.1
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 3180.2 1860 86.4
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 3161.7 1863 85.9
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 3147.8 1863 85.7
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 3109.3 1829 87.0
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 2734.1 1825 76.5
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 2721.8 1844 75.7
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2610.5 1887 71.9
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2095.5 1901 58.8
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2087.0 1940 58.8
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2082.0 1960 57.7
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2077.8 1885 59.2
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2073.9 1918 58.8
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2072.4 1960 57.5
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2067.4 1956 57.5
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2062.7 1919 58.0
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2059.6 1904 58.9
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2058.1 1910 58.3
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2051.9 1943 57.3
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2049.6 1935 57.2
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2045.0 1945 57.7
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2037.3 1912 57.3
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2033.8 1921 57.7
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2030.0 1943 57.5
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2027.3 1886 58.0
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2016.5 1915 57.4
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2015.0 1892 57.1
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1997.2 1920 55.8
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 1996.1 1993 55.2
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1983.8 1901 57.8
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1980.3 1920 55.6
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 1978.8 1915 55.8
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 1972.6 1904 56.4
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 1968.4 1912 56.1
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 1966.0 1921 55.5
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 1962.6 1976 54.6
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 1960.3 1919 55.8
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 1957.6 1926 55.5
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1951.4 1918 56.0
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 1946.4 1896 55.9
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1944.9 1910 55.2
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 1942.2 1919 55.5
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 1939.9 1868 56.9
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 1929.1 1904 55.5
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 1929.1 1907 55.5
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 1918.7 1907 55.1
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 1910.2 1920 55.0
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1896.7 1934 53.1
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1896.3 1995 52.6
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 1896.3 1957 52.8
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 1892.9 1921 54.9
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 1883.2 1912 53.5
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1882.8 2045 52.0
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 1871.7 1931 52.4
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1871.3 1880 53.2
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1871.3 1930 53.1
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1864.7 1895 53.2
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1863.2 1950 53.0
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1862.4 1772 58.0
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 1842.0 1919 52.1
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 1830.1 1951 52.5
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1829.7 1869 52.6
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1813.9 2027 50.3
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1811.2 1883 53.5
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 1811.2 1863 53.5
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1790.8 1851 53.2
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1788.5 1932 52.0
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1787.7 1864 53.2
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1767.3 1855 52.8
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1752.6 1925 50.5
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1746.9 1760 54.2
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1734.9 1897 50.4
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1720.3 1903 50.2
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1716.4 1910 50.0
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1677.5 1910 50.1
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1653.6 2110 47.0
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1562.0 1910 48.0
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1558.1 1571 55.2
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1478.4 1535 52.4
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1380.9 1733 47.1
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1378.2 1888 44.1
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1303.5 1356 54.6
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 0.0e+00 1258.4 710 89.4
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1209.5 2121 37.6
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1174.1 1058 58.7
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1167.9 1894 38.9
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1167.1 2164 36.2
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 9.3e-305 1051.2 2089 34.9
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.1e-256 890.6 675 66.5
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 1.3e-226 791.6 783 54.9
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 4.4e-222 776.5 2068 30.3
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 1.3e-221 775.0 1139 41.5
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 1.6e-211 741.5 1345 37.0
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 3.0e-202 710.7 678 56.2
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 1.8e-186 658.3 738 50.8
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 7.7e-174 616.3 699 50.6
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 9.7e-153 546.2 787 44.3
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 1.5e-108 399.4 358 56.1
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 8.1e-107 393.7 401 51.6
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 9.3e-87 327.0 224 75.4
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 3.8e-72 278.5 187 71.7
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 5.1e-69 268.1 224 62.5
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.4e-66 260.0 473 40.0
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 1.1e-55 223.8 271 46.5
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 1.0e-53 217.2 271 44.3
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.3e-53 216.1 218 53.7
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 5.1e-53 214.9 279 45.2
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 1.7e-48 199.9 124 75.8
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 2.8e-35 156.0 240 43.3
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 6.1e-30 138.3 160 48.1
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 2.0e-25 123.2 80 75.0
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 1.3e-24 120.6 125 50.4
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 3.0e-21 109.4 475 25.3
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 9.1e-18 97.8 140 39.3
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 4.5e-17 95.5 69 63.8
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 9.5e-15 87.8 64 65.6
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 2.9e-11 76.3 58 62.1
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 4.9e-11 75.5 61 54.1
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 2.0e-09 70.1 308 27.6
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 1.7e-08 67.0 74 48.6
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 3.0e-08 66.2 64 45.3
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 6.2e-06 58.5 82 39.0


User provided reference genes

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