Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52032 Brassica carinata HOM05D000001 ORTHO05D095211 4.0e-30 134.0 64 100.0
A01p05940 Brassica napus HOM05D000001 ORTHO05D009097 1.1e-11 72.8 45 77.8
C01p06550 Brassica napus HOM05D000001 ORTHO05D009097 1.1e-11 72.8 45 77.8
BolC1t00650H Brassica oleracea HOM05D000001 ORTHO05D009097 1.1e-11 72.8 45 77.8
BraA01t00560Z Brassica rapa HOM05D000001 ORTHO05D009097 1.1e-11 72.8 45 77.8
Thhalv10024468m.g Eutrema salsugineum HOM05D000001 ORTHO05D009097 7.0e-11 70.1 45 75.6
Sp7g30220 Schrenkiella parvula HOM05D000001 ORTHO05D009097 7.0e-11 70.1 45 75.6
Carub.0007s0814 Capsella rubella HOM05D000001 ORTHO05D009097 1.7e-09 65.5 41 75.6
CARHR240350 Cardamine hirsuta HOM05D000001 ORTHO05D009097 3.0e-09 64.7 36 83.3
AL7G19410 Arabidopsis lyrata HOM05D000001 ORTHO05D009097 5.0e-09 63.9 49 65.3
AT4G32430 Arabidopsis thaliana HOM05D000001 ORTHO05D009097 1.1e-08 62.8 49 63.3
Aa31LG2G17480 Aethionema arabicum HOM05D000001 ORTHO05D009097 2.1e-07 58.5 40 70.0
Cpa.g.sc75.42 Carica papaya HOM05D000001 ORTHO05D009097 3.6e-07 57.8 57 50.9
Potri.017G042100 Populus trichocarpa HOM05D000001 ORTHO05D009097 4.7e-07 57.4 41 61.0
Sabra17G0028700 Salix brachista HOM05D000001 ORTHO05D009097 4.7e-07 57.4 41 61.0
AagrBONN_evm.TU.Sc2ySwM_344.1388 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.8e-06 55.5 47 51.1
MSTRG.9816 Avicennia marina HOM05D000001 ORTHO05D009097 1.8e-06 55.5 45 53.3
CSS0013359 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009097 2.3e-06 55.1 41 61.0
CSS0027274 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009097 2.3e-06 55.1 41 61.0
AagrBONN_evm.TU.Sc2ySwM_228.877 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.1e-06 54.7 68 39.7
AagrBONN_evm.TU.Sc2ySwM_344.464 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.0e-06 54.3 68 42.6
AagrBONN_evm.TU.Sc2ySwM_362.2733 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.0e-06 54.3 37 56.8
Lj4P811T33 Lonicera japonica HOM05D000001 ORTHO05D000003 4.0e-06 54.3 38 57.9
Manes.06G048800 Manihot esculenta HOM05D000001 ORTHO05D009097 4.0e-06 54.3 41 58.5
RcHm_v2.0_Chr5g0002171 Rosa chinensis HOM05D000001 ORTHO05D009097 4.0e-06 54.3 45 55.6
Lalb_Chr23g0276491 Lupinus albus HOM05D000001 ORTHO05D009097 5.2e-06 53.9 36 61.1
Lalb_Chr23g0276551 Lupinus albus HOM05D000001 ORTHO05D009097 5.2e-06 53.9 36 61.1
Sp6g17650 Schrenkiella parvula HOM05D000001 ORTHO05D000003 5.2e-06 53.9 40 55.0
AagrBONN_evm.TU.Sc2ySwM_228.5413 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.8e-06 53.5 47 51.1
BcaC01g00927 Brassica carinata HOM05D000001 ORTHO05D000003 6.8e-06 53.5 53 41.5
C03p86010 Brassica napus HOM05D000001 ORTHO05D000003 6.8e-06 53.5 53 41.5
BolC3t20893H Brassica oleracea HOM05D000001 ORTHO05D000003 6.8e-06 53.5 53 41.5
Carub.0007s0640 Capsella rubella HOM05D000001 ORTHO05D000003 6.8e-06 53.5 58 44.8
CARHR134460 Cardamine hirsuta HOM05D000001 ORTHO05D000003 6.8e-06 53.5 40 50.0
THA.LOC104800141 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 6.8e-06 53.5 52 48.1
AagrBONN_evm.TU.Sc2ySwM_368.1706 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.9e-06 53.1 38 60.5
Eucgr.C03781 Eucalyptus grandis HOM05D000001 ORTHO05D009485 8.9e-06 53.1 53 47.2
MD15G1174400 Malus domestica HOM05D000001 ORTHO05D009097 8.9e-06 53.1 45 55.6


User provided reference genes

Program Settings