Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51800 Brassica carinata HOM05D007765 ORTHO05D009826 1.8e-74 282.7 163 100.0
C01p08880 Brassica napus HOM05D007765 ORTHO05D009826 1.8e-74 282.7 163 100.0
BolC1t00878H Brassica oleracea HOM05D007765 ORTHO05D009826 1.8e-74 282.7 163 100.0
A01p07960 Brassica napus HOM05D007765 ORTHO05D009826 1.2e-70 270.0 163 96.3
BraA01t00741Z Brassica rapa HOM05D007765 ORTHO05D009826 2.0e-70 269.2 163 95.7
BcaNung04419 Brassica carinata HOM05D007765 ORTHO05D009826 1.4e-68 263.1 164 88.4
Sp7g28050 Schrenkiella parvula HOM05D007765 ORTHO05D009826 4.8e-64 248.1 163 89.0
Thhalv10026906m.g Eutrema salsugineum HOM05D007765 ORTHO05D009826 1.9e-60 236.1 163 81.0
BcaB03g12635 Brassica carinata HOM05D007765 ORTHO05D009826 1.2e-59 233.4 163 80.4
CARHR238080 Cardamine hirsuta HOM05D007765 ORTHO05D009826 6.1e-59 231.1 163 79.1
A08p19380 Brassica napus HOM05D007765 ORTHO05D009826 2.6e-57 225.7 163 85.3
BraA08t33899Z Brassica rapa HOM05D007765 ORTHO05D009826 2.6e-57 225.7 163 85.3
AT4G30180 Arabidopsis thaliana HOM05D007765 ORTHO05D009826 4.4e-57 224.9 163 85.3
C03p88840 Brassica napus HOM05D007765 ORTHO05D009826 8.2e-56 220.7 163 83.4
BolC3t21196H Brassica oleracea HOM05D007765 ORTHO05D009826 8.2e-56 220.7 163 83.4
Carub.0007s1043 Capsella rubella HOM05D007765 ORTHO05D009826 1.8e-55 219.5 164 78.0
AL7G22010 Arabidopsis lyrata HOM05D007765 ORTHO05D009826 2.0e-54 216.1 161 79.5
Sp3g32420 Schrenkiella parvula HOM05D007765 ORTHO05D009826 3.0e-42 175.6 168 62.5
AL3G52940 Arabidopsis lyrata HOM05D007765 ORTHO05D009826 4.0e-42 175.3 172 60.5
AT2G18969 Arabidopsis thaliana HOM05D007765 ORTHO05D009826 5.2e-42 174.9 175 58.9
BcaC04g22872 Brassica carinata HOM05D007765 ORTHO05D009826 4.8e-40 168.3 164 59.8
Carub.0003s3320 Capsella rubella HOM05D007765 ORTHO05D009826 4.8e-40 168.3 176 58.5
BolC9t54340H Brassica oleracea HOM05D007765 ORTHO05D009826 6.3e-40 167.9 164 59.8
A09p12150 Brassica napus HOM05D007765 ORTHO05D009826 1.8e-39 166.4 164 59.1
C09p14370 Brassica napus HOM05D007765 ORTHO05D009826 1.8e-39 166.4 164 59.1
BraA09t36859Z Brassica rapa HOM05D007765 ORTHO05D009826 1.8e-39 166.4 164 59.1
CARHR109510 Cardamine hirsuta HOM05D007765 ORTHO05D009826 2.7e-38 162.5 174 57.5
Thhalv10022885m.g Eutrema salsugineum HOM05D007765 ORTHO05D009826 7.7e-38 161.0 168 57.7
BcaB07g31628 Brassica carinata HOM05D007765 ORTHO05D009826 3.8e-37 158.7 164 58.5
THA.LOC104819971 Tarenaya hassleriana HOM05D007765 ORTHO05D009826 3.0e-34 149.1 170 55.3
THA.LOC104803946 Tarenaya hassleriana HOM05D007765 ORTHO05D009826 8.8e-34 147.5 175 54.3
BcaC04g20459 Brassica carinata HOM05D007765 ORTHO05D009826 2.5e-28 129.4 82 81.7
THA.LOC104803486 Tarenaya hassleriana HOM05D007765 ORTHO05D009826 3.0e-26 122.5 173 48.0
TPR.G5381 Trifolium pratense HOM05D007765 ORTHO05D009826 1.5e-20 103.6 164 41.5
Ca_21240_v3 Cicer arietinum L. HOM05D007139 ORTHO05D009171 4.7e-19 98.6 150 41.3
Aa31LG8G16060 Aethionema arabicum HOM05D007765 ORTHO05D009826 8.0e-19 97.8 161 48.4
Medtr4g127700 Medicago truncatula HOM05D007765 ORTHO05D009826 8.0e-19 97.8 150 43.3
BcaB03g16695 Brassica carinata HOM05D007765 ORTHO05D009826 3.1e-18 95.9 102 52.9
arahy.Tifrunner.gnm1.ann1.8SXC5S Arachis hypogaea HOM05D007765 ORTHO05D009826 1.5e-17 93.6 153 40.5
Gohir.D13G216400 Gossypium hirsutum HOM05D007765 ORTHO05D009826 2.0e-17 93.2 158 39.2
Gorai.013G246700 Gossypium raimondii HOM05D007765 ORTHO05D009826 5.8e-17 91.7 158 39.2
BcaC06g36508 Brassica carinata HOM05D007765 ORTHO05D009826 7.5e-17 91.3 101 55.4
Gohir.A13G212300 Gossypium hirsutum HOM05D007765 ORTHO05D009826 2.2e-16 89.7 158 39.2
Dinv41219 Davidia involucrata HOM05D007765 ORTHO05D009826 2.4e-15 86.3 195 34.9
Medtr2g036670 Medicago truncatula HOM05D007765 ORTHO05D009826 4.1e-15 85.5 178 34.8
Lj4g0004123 Lotus japonicus HOM05D007765 ORTHO05D009826 5.4e-15 85.1 203 32.0
arahy.Tifrunner.gnm1.ann1.YM1G3Q Arachis hypogaea HOM05D007765 ORTHO05D009826 7.0e-15 84.7 175 41.1
Phvul.009G238800 Phaseolus vulgaris HOM05D007765 ORTHO05D009826 3.5e-14 82.4 187 31.6
Lalb_Chr12g0199471 Lupinus albus HOM05D007765 ORTHO05D009826 4.6e-14 82.0 178 36.5
TPR.G9240 Trifolium pratense HOM05D007765 ORTHO05D009826 1.3e-13 80.5 169 34.9
CiPaw.07G194200 Carya illinoinensis HOM05D007765 ORTHO05D009826 2.3e-13 79.7 227 33.5
COL.COLO4_36375 Corchorus olitorius HOM05D007765 ORTHO05D009826 2.3e-13 79.7 194 33.5
Phvul.003G143700 Phaseolus vulgaris HOM05D007765 ORTHO05D009826 2.3e-13 79.7 209 33.5
Lalb_Chr18g0052451 Lupinus albus HOM05D007765 ORTHO05D009826 3.0e-13 79.3 173 36.4
QL11p005142 Quercus lobata HOM05D007765 ORTHO05D009826 3.9e-13 79.0 207 33.3
FAN12G2617 Fragaria x ananassa HOM05D007765 ORTHO05D009826 8.6e-13 77.8 205 32.7
Lj6g0023329 Lotus japonicus HOM05D007765 ORTHO05D009826 8.6e-13 77.8 172 34.3
Sed0013776 Sechium edule HOM05D007765 ORTHO05D009826 8.6e-13 77.8 168 33.3
RcHm_v2.0_Chr4g0400891 Rosa chinensis HOM05D007765 ORTHO05D009826 1.5e-12 77.0 202 32.7
VMungo1309G2639 Vigna mungo HOM05D007765 ORTHO05D009826 2.5e-12 76.3 187 34.2
FAN22G0698 Fragaria x ananassa HOM05D007765 ORTHO05D009826 3.3e-12 75.9 204 32.8
FvH4_4g07800 Fragaria vesca HOM05D007765 ORTHO05D009826 4.3e-12 75.5 205 32.7
TAR383G0713 Trochodendron aralioides HOM05D007765 ORTHO05D009826 9.5e-12 74.3 214 31.3
FAN07G1496 Fragaria x ananassa HOM05D007765 ORTHO05D009826 2.1e-11 73.2 204 31.9
CsaV3_2G008530 Cucumis sativus L. HOM05D007765 ORTHO05D009826 4.7e-11 72.0 186 29.6
FAN17G2229 Fragaria x ananassa HOM05D007765 ORTHO05D009826 4.7e-11 72.0 205 33.2
Glyma.15G162800 Glycine max HOM05D007765 ORTHO05D009826 6.2e-11 71.6 187 32.1
ClCG11G011990 Citrullus lanatus HOM05D007765 ORTHO05D009826 8.0e-11 71.2 196 30.1
Glyma.17G061700 Glycine max HOM05D007765 ORTHO05D009826 1.1e-10 70.9 205 30.7
Glyma.13G098000 Glycine max HOM05D007765 ORTHO05D009826 2.3e-10 69.7 205 31.7
Potri.018G090200 Populus trichocarpa HOM05D007765 ORTHO05D009826 2.3e-10 69.7 211 30.3
Glyma.09G056600 Glycine max HOM05D007765 ORTHO05D009826 6.8e-10 68.2 200 29.5
Duzib150G0923 Durio zibethinus HOM05D007765 ORTHO05D009826 8.9e-10 67.8 221 31.2
Psat1g146600 Pisum sativum HOM05D007765 ORTHO05D009826 1.5e-09 67.0 75 49.3
Sabra18G0077700 Salix brachista HOM05D007765 ORTHO05D009826 3.4e-09 65.9 214 29.4
Atru.chr7.847 Acer truncatum HOM05D007765 ORTHO05D009826 7.5e-09 64.7 200 28.5
Prupe.1G081900 Prunus persica HOM05D007765 ORTHO05D009826 7.5e-09 64.7 199 32.2
Dinv19560 Davidia involucrata HOM05D007765 ORTHO05D009826 1.9e-07 60.1 195 28.2
Lalb_Chr20g0116301 Lupinus albus HOM05D007765 ORTHO05D009826 2.4e-07 59.7 77 46.8
MBI16_g38085_MAGBIO Magnolia biondii HOM05D007765 ORTHO05D009826 4.1e-07 58.9 192 27.6


User provided reference genes

Program Settings