Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 6.2e-55 217.2 112 100.0
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 6.2e-55 217.2 112 100.0
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 9.4e-19 97.1 75 69.3
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 3.7e-15 85.1 71 63.4
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 3.7e-15 85.1 71 63.4
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 3.7e-15 85.1 71 63.4
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 3.7e-15 85.1 71 63.4
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 3.7e-15 85.1 71 63.4
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 3.7e-15 85.1 71 63.4
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 1.1e-14 83.6 71 62.0
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 1.1e-14 83.6 71 62.0
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 1.1e-14 83.6 71 62.0
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 1.1e-14 83.6 71 62.0
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 1.4e-14 83.2 71 62.0
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 2.4e-14 82.4 71 60.6
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 3.1e-14 82.0 71 60.6
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 3.1e-14 82.0 71 60.6
BraA01t00758Z Brassica rapa HOM05D040186 ORTHO05D033310 4.1e-14 81.6 116 51.7
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 2.7e-13 79.0 71 59.2
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 3.5e-13 78.6 71 57.7
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 4.5e-13 78.2 71 57.7
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 4.5e-13 78.2 71 57.7
C01p09080 Brassica napus HOM05D040186 ORTHO05D033310 3.8e-12 75.1 37 100.0
BolC1t00899H Brassica oleracea HOM05D040186 ORTHO05D033310 3.8e-12 75.1 37 100.0
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 5.5e-11 71.2 77 50.6
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.6e-10 69.7 71 50.7
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.6e-10 69.7 71 50.7
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.1e-10 69.3 71 49.3
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 8.0e-10 67.4 71 47.9
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 8.0e-10 67.4 71 50.7
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 1.4e-09 66.6 71 47.9
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 1.8e-09 66.2 71 47.9
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.8e-09 66.2 71 46.5
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 2.3e-09 65.9 71 46.5
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 3.0e-09 65.5 71 47.9
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 4.0e-09 65.1 71 45.1
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 4.0e-09 65.1 71 46.5
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 4.0e-09 65.1 71 49.3
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 4.0e-09 65.1 71 46.5
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 5.2e-09 64.7 71 46.5
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 8.8e-09 63.9 71 46.5
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 8.8e-09 63.9 71 46.5
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 8.8e-09 63.9 71 43.7
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 8.8e-09 63.9 71 45.1
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 8.8e-09 63.9 71 45.1
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 1.2e-08 63.5 71 47.9
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 1.2e-08 63.5 71 45.1
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 1.2e-08 63.5 71 45.1
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.5e-08 63.2 71 46.5
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 1.5e-08 63.2 71 46.5
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 1.5e-08 63.2 71 47.9
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 1.5e-08 63.2 71 45.1
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 1.5e-08 63.2 71 43.7
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 2.0e-08 62.8 71 45.1
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 2.0e-08 62.8 71 45.1
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 2.0e-08 62.8 71 45.1
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 2.6e-08 62.4 71 43.7
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 2.6e-08 62.4 69 46.4
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 3.4e-08 62.0 71 45.1
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.4e-08 61.6 71 46.5
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 4.4e-08 61.6 71 43.7
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 4.4e-08 61.6 71 42.3
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 5.7e-08 61.2 71 42.3
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 5.7e-08 61.2 71 45.1
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 5.7e-08 61.2 71 43.7
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 5.7e-08 61.2 71 43.7
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 7.5e-08 60.8 69 46.4
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 7.5e-08 60.8 69 44.9
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 7.5e-08 60.8 71 45.1
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 9.8e-08 60.5 71 43.7
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 9.8e-08 60.5 71 45.1
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 9.8e-08 60.5 71 42.3
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 9.8e-08 60.5 71 42.3
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 1.3e-07 60.1 71 45.1
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 1.3e-07 60.1 71 43.7
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 1.3e-07 60.1 71 40.8
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 1.3e-07 60.1 71 46.5
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.3e-07 60.1 71 43.7
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 2.2e-07 59.3 69 43.5
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 2.2e-07 59.3 69 43.5
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.2e-07 59.3 71 45.1
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 2.8e-07 58.9 71 40.8
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 3.7e-07 58.5 71 45.1
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 3.7e-07 58.5 71 43.7
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 3.7e-07 58.5 71 43.7
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 3.7e-07 58.5 71 43.7
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.8e-07 58.2 71 43.7
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.8e-07 58.2 71 43.7
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 4.8e-07 58.2 71 43.7
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 4.8e-07 58.2 71 42.3
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 4.8e-07 58.2 71 43.7
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 6.3e-07 57.8 71 42.3
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 6.3e-07 57.8 71 43.7
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 1.8e-06 56.2 69 42.0
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 1.8e-06 56.2 71 38.0
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 1.8e-06 56.2 71 42.3
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 1.8e-06 56.2 71 40.8
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 2.4e-06 55.8 71 40.8
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 3.1e-06 55.5 71 38.0
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 3.1e-06 55.5 71 40.8
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 4.1e-06 55.1 69 40.6
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 4.1e-06 55.1 71 40.8
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 4.1e-06 55.1 71 40.8
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 5.4e-06 54.7 71 42.3
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 5.4e-06 54.7 71 42.3
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 5.4e-06 54.7 71 39.4
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 9.1e-06 53.9 71 40.8
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 9.1e-06 53.9 71 39.4


User provided reference genes

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