Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51771 Brassica carinata HOM05D016251 ORTHO05D017520 4.1e-181 637.9 309 100.0
BcaC09g52200 Brassica carinata HOM05D016251 ORTHO05D017520 9.6e-122 440.7 306 70.3
C01p09200 Brassica napus HOM05D016251 ORTHO05D017520 9.6e-122 440.7 306 70.3
A01p08230 Brassica napus HOM05D016251 ORTHO05D017520 2.7e-116 422.5 329 63.8
BraA01t00768Z Brassica rapa HOM05D016251 ORTHO05D017520 1.6e-105 386.7 293 65.2
CARHR237830 Cardamine hirsuta HOM05D008365 ORTHO05D017520 7.2e-53 211.8 293 39.6
BolC1t00913H Brassica oleracea HOM05D016251 ORTHO05D017520 2.5e-45 186.8 126 71.4
Thhalv10000684m.g Eutrema salsugineum HOM05D008365 ORTHO05D017520 1.2e-36 157.9 220 40.5
AL7G23550 Arabidopsis lyrata HOM05D008615 ORTHO05D021443 8.9e-27 125.2 307 29.6
BcaNung01345 Brassica carinata HOM05D008615 ORTHO05D021443 4.4e-26 122.9 286 28.7
Carub.0004s1487 Capsella rubella HOM05D008365 ORTHO05D011149 8.3e-25 118.6 223 34.1
C03p88560 Brassica napus HOM05D008365 ORTHO05D011149 1.4e-24 117.9 215 36.3
BcaC01g01143 Brassica carinata HOM05D008365 ORTHO05D011149 7.8e-23 112.1 245 31.8
AL7G22840 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 3.9e-22 109.8 282 28.4
C01p09160 Brassica napus HOM05D000574 ORTHO05D004834 6.6e-22 109.0 267 27.3
BolC1t00907H Brassica oleracea HOM05D000574 ORTHO05D004834 6.6e-22 109.0 267 27.3
BcaC09g51774 Brassica carinata HOM05D000574 ORTHO05D004834 1.9e-21 107.5 252 27.4
AL6G29250 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 7.3e-21 105.5 247 29.6
BcaB03g12656 Brassica carinata HOM05D008365 ORTHO05D011149 1.2e-20 104.8 225 33.3
AL5G23100 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 2.1e-20 104.0 230 30.0
A01p08200 Brassica napus HOM05D000574 ORTHO05D004834 2.8e-20 103.6 264 25.8
BraA01t00766Z Brassica rapa HOM05D000574 ORTHO05D004834 2.8e-20 103.6 264 25.8
BraA08t33873Z Brassica rapa HOM05D008365 ORTHO05D011149 2.8e-20 103.6 224 33.0
Carub.0008s0192 Capsella rubella HOM05D008365 ORTHO05D011149 3.6e-20 103.2 249 31.7
A08p19110 Brassica napus HOM05D008365 ORTHO05D011149 4.7e-20 102.8 224 33.0
Carub.0004s1486 Capsella rubella HOM05D008365 ORTHO05D011149 4.7e-20 102.8 249 31.7
AL4G38030 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 1.4e-19 101.3 283 27.6
CARHR215270 Cardamine hirsuta HOM05D008365 ORTHO05D011149 1.4e-19 101.3 248 31.0
AL4G38000 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 1.8e-19 100.9 257 28.8
AL7G22490 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 1.8e-19 100.9 251 31.5
AL6G29230 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 3.1e-19 100.1 247 30.0
A07p02810 Brassica napus HOM05D008365 ORTHO05D011149 8.9e-19 98.6 217 34.1
BraA07t28079Z Brassica rapa HOM05D008365 ORTHO05D011149 8.9e-19 98.6 217 34.1
AL7G22480 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 1.2e-18 98.2 256 30.9
AL7G22500 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 2.0e-18 97.4 252 30.6
A08p19120 Brassica napus HOM05D008365 ORTHO05D011149 2.6e-18 97.1 242 31.0
BolC1t00910H Brassica oleracea HOM05D016251 ORTHO05D017520 4.4e-18 96.3 62 77.4
A03p58490 Brassica napus HOM05D008615 ORTHO05D021443 9.9e-18 95.1 175 34.9
Sp7g27580 Schrenkiella parvula HOM05D008365 ORTHO05D011149 9.9e-18 95.1 245 31.0
Carub.0005s1047 Capsella rubella HOM05D008615 ORTHO05D021391 2.9e-17 93.6 333 26.4
Carub.0007s1099 Capsella rubella HOM05D008615 ORTHO05D011779 2.9e-17 93.6 241 29.5
Carub.0001s4052 Capsella rubella HOM05D008365 ORTHO05D014862 3.8e-17 93.2 223 30.0
Carub.0001s4054 Capsella rubella HOM05D008365 ORTHO05D014862 8.4e-17 92.0 226 31.0
AT4G29770 Arabidopsis thaliana HOM05D008365 ORTHO05D011149 1.4e-16 91.3 249 28.5
AL1G61110 Arabidopsis lyrata HOM05D008365 ORTHO05D014862 1.9e-16 90.9 224 32.1
CARHR063690 Cardamine hirsuta HOM05D008365 ORTHO05D014862 1.9e-16 90.9 181 33.7
Thhalv10027444m.g Eutrema salsugineum HOM05D008365 ORTHO05D011149 1.9e-16 90.9 252 29.4
AT4G29760 Arabidopsis thaliana HOM05D008365 ORTHO05D011149 3.2e-16 90.1 246 28.0
C03p88570 Brassica napus HOM05D008365 ORTHO05D011149 3.2e-16 90.1 196 31.1
CARHR063260 Cardamine hirsuta HOM05D008365 ORTHO05D014862 3.2e-16 90.1 222 32.4
BraA08t33874Z Brassica rapa HOM05D008365 ORTHO05D011149 5.4e-16 89.4 239 30.5
CARHR163030 Cardamine hirsuta HOM05D008365 ORTHO05D014862 7.1e-16 89.0 188 30.3
BcaB03g12655 Brassica carinata HOM05D008365 ORTHO05D011149 1.6e-15 87.8 236 28.8
Thhalv10026918m.g Eutrema salsugineum HOM05D008615 ORTHO05D011779 3.5e-15 86.7 214 32.2
AL1G59580 Arabidopsis lyrata HOM05D008365 ORTHO05D014862 4.6e-15 86.3 194 33.0
Thhalv10026005m.g Eutrema salsugineum HOM05D008365 ORTHO05D011149 4.6e-15 86.3 146 34.2
C04p31890 Brassica napus HOM05D008615 ORTHO05D011779 6.0e-15 85.9 197 32.0
C03p88590 Brassica napus HOM05D008365 ORTHO05D011149 1.0e-14 85.1 234 29.5
Carub.0001s4053 Capsella rubella HOM05D008365 ORTHO05D014862 1.3e-14 84.7 228 29.4
AL1G54760 Arabidopsis lyrata HOM05D008365 ORTHO05D014862 1.7e-14 84.3 220 29.1
Thhalv10011766m.g Eutrema salsugineum HOM05D008365 ORTHO05D011149 2.3e-14 84.0 201 30.8
A08p19130 Brassica napus HOM05D008365 ORTHO05D011149 3.9e-14 83.2 239 30.1
C01p09180 Brassica napus HOM05D002666 ORTHO05D012460 3.9e-14 83.2 49 81.6
AT1G48180 Arabidopsis thaliana HOM05D008365 ORTHO05D014862 8.6e-14 82.0 189 30.2
BcaNung02965 Brassica carinata HOM05D008365 ORTHO05D011149 8.6e-14 82.0 169 30.8
CARHR063700 Cardamine hirsuta HOM05D008365 ORTHO05D014862 1.1e-13 81.6 193 31.1
CARHR263650 Cardamine hirsuta HOM05D008365 ORTHO05D014862 2.5e-13 80.5 158 30.4
A01p07560 Brassica napus HOM05D008365 ORTHO05D011149 5.6e-13 79.3 254 29.1
CARHR237670 Cardamine hirsuta HOM05D008365 ORTHO05D011149 7.3e-13 79.0 220 29.1
AL1G32050 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 1.2e-12 78.2 204 27.9
BraA01t00699Z Brassica rapa HOM05D008365 ORTHO05D011149 1.2e-12 78.2 228 29.8
BcaC09g51862 Brassica carinata HOM05D008365 ORTHO05D011149 1.6e-12 77.8 232 28.0
BcaC03g15654 Brassica carinata HOM05D008615 ORTHO05D027756 4.7e-12 76.3 210 27.6
BolC2t09371H Brassica oleracea HOM05D008615 ORTHO05D027756 4.7e-12 76.3 210 27.6
BolC1t00807H Brassica oleracea HOM05D008365 ORTHO05D011149 8.1e-12 75.5 169 30.2
BolC1t00941H Brassica oleracea HOM05D008615 ORTHO05D011779 1.1e-11 75.1 194 32.0
A02p20530 Brassica napus HOM05D008615 ORTHO05D027756 1.8e-11 74.3 218 27.1
BcaC09g52217 Brassica carinata HOM05D008615 ORTHO05D011779 2.4e-11 73.9 194 31.4
C01p09790 Brassica napus HOM05D008615 ORTHO05D011779 2.4e-11 73.9 194 31.4
C02p33310 Brassica napus HOM05D008615 ORTHO05D027756 4.0e-11 73.2 212 26.9
BraA03t14910Z Brassica rapa HOM05D008615 ORTHO05D021443 1.2e-10 71.6 107 37.4
CARHR251110 Cardamine hirsuta HOM05D008365 ORTHO05D011149 1.5e-10 71.2 219 28.3
AL7G36450 Arabidopsis lyrata HOM05D013859 ORTHO05D018433 2.9e-09 67.0 261 24.5
C01p08200 Brassica napus HOM05D008365 ORTHO05D011149 3.8e-09 66.6 225 26.2
Thhalv10000455m.g Eutrema salsugineum HOM05D008615 ORTHO05D011779 3.8e-09 66.6 170 28.8
CARHR063300 Cardamine hirsuta HOM05D008365 ORTHO05D116364 1.1e-08 65.1 134 30.6
AT5G18040 Arabidopsis thaliana HOM05D008365 ORTHO05D081110 2.4e-08 63.9 81 40.7
AT1G51670 Arabidopsis thaliana HOM05D008365 ORTHO05D014862 3.2e-08 63.5 151 31.1
BolC4t24741H Brassica oleracea HOM05D008615 ORTHO05D011779 7.8e-07 58.9 194 26.8


User provided reference genes

Program Settings