Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51752 Brassica carinata HOM05D006545 ORTHO05D007985 1.3e-30 136.0 77 100.0
A01p08390 Brassica napus HOM05D000125 ORTHO05D000120 1.1e-26 122.9 77 88.3
BraA01t00787Z Brassica rapa HOM05D000125 ORTHO05D000120 1.1e-26 122.9 77 88.3
BcaNung00485 Brassica carinata HOM05D006545 ORTHO05D007985 1.4e-26 122.5 77 88.3
A03p59030 Brassica napus HOM05D006545 ORTHO05D007985 7.1e-26 120.2 76 86.8
Sp7g27510 Schrenkiella parvula HOM05D006545 ORTHO05D007985 4.6e-25 117.5 77 85.7
AL7G22570 Arabidopsis lyrata HOM05D006545 ORTHO05D007985 2.3e-24 115.2 77 83.1
Carub.0007s1077 Capsella rubella HOM05D006545 ORTHO05D007985 2.3e-24 115.2 77 83.1
Thhalv10026717m.g Eutrema salsugineum HOM05D006545 ORTHO05D007985 2.3e-24 115.2 77 85.7
CARHR237610 Cardamine hirsuta HOM05D006545 ORTHO05D007985 3.0e-24 114.8 77 83.1
AT4G29735 Arabidopsis thaliana HOM05D006545 ORTHO05D007985 5.1e-24 114.0 77 81.8
C03p89150 Brassica napus HOM05D006545 ORTHO05D007985 1.1e-23 112.8 75 82.7
Aa31LG2G20830 Aethionema arabicum HOM05D006545 ORTHO05D007985 1.5e-23 112.5 77 81.8
BcaC01g01182 Brassica carinata HOM05D006545 ORTHO05D007985 3.3e-23 111.3 75 81.3
THA.LOC104820022 Tarenaya hassleriana HOM05D006545 ORTHO05D007985 4.3e-23 110.9 77 81.8
THA.LOC104814622 Tarenaya hassleriana HOM05D006545 ORTHO05D007985 9.6e-23 109.8 77 81.8
BraA03t14963Z Brassica rapa HOM05D006545 ORTHO05D007985 2.1e-22 108.6 98 68.4
C01p09720 Brassica napus HOM05D006545 ORTHO05D007985 1.4e-21 105.9 99 66.7
BolC7t46179H Brassica oleracea HOM05D006545 ORTHO05D007985 6.9e-21 103.6 102 63.7
C07p57080 Brassica napus HOM05D006545 ORTHO05D007985 9.0e-21 103.2 64 85.9
Lj4g0002489 Lotus japonicus HOM05D006545 ORTHO05D007985 3.4e-20 101.3 77 75.3
Psat4g015120 Pisum sativum HOM05D006545 ORTHO05D007985 3.4e-20 101.3 77 77.9
PGR102G1056 Punica granatum HOM05D006545 ORTHO05D007985 3.4e-20 101.3 77 74.0
Ciclev10010087m.g Citrus clementina HOM05D006545 ORTHO05D007985 5.9e-20 100.5 77 76.6
BcaC09g52224 Brassica carinata HOM05D006545 ORTHO05D007985 7.6e-20 100.1 64 84.4
Cfa003081 Carpinus fangiana HOM05D000085 ORTHO05D001460 7.6e-20 100.1 77 75.3
Potri.004G215200 Populus trichocarpa HOM05D006545 ORTHO05D007985 7.6e-20 100.1 75 77.3
Atru.chr7.1592 Acer truncatum HOM05D006545 ORTHO05D007985 1.0e-19 99.8 77 74.0
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 1.0e-19 99.8 77 76.6
Phvul.003G136800 Phaseolus vulgaris HOM05D006545 ORTHO05D007985 1.0e-19 99.8 77 74.0
DCAR_028856 Daucus carota HOM05D006545 ORTHO05D007985 1.3e-19 99.4 77 72.7
DCAR_032235 Daucus carota HOM05D006545 ORTHO05D007985 1.3e-19 99.4 77 72.7
Glyma.13G104200 Glycine max HOM05D006545 ORTHO05D007985 1.3e-19 99.4 77 74.0
Glyma.17G054900 Glycine max HOM05D006545 ORTHO05D007985 1.3e-19 99.4 77 74.0
CANSAT56G1499 Cannabis sativa HOM05D006545 ORTHO05D007985 1.7e-19 99.0 77 70.1
CANSAT56G4473 Cannabis sativa HOM05D006545 ORTHO05D007985 1.7e-19 99.0 77 70.1
Actinidia29903 Actinidia chinensis HOM05D000085 ORTHO05D001460 2.2e-19 98.6 76 75.0
Lalb_Chr07g0180851 Lupinus albus HOM05D006545 ORTHO05D007985 2.9e-19 98.2 77 74.0
Prupe.7G209400 Prunus persica HOM05D006545 ORTHO05D007985 2.9e-19 98.2 77 74.0
MSTRG.10562 Avicennia marina HOM05D006545 ORTHO05D007985 3.8e-19 97.8 73 74.0
CiPaw.03G215100 Carya illinoinensis HOM05D006545 ORTHO05D007985 3.8e-19 97.8 77 75.3
Dinv42321 Davidia involucrata HOM05D006545 ORTHO05D007985 3.8e-19 97.8 76 72.4
QL02p062521 Quercus lobata HOM05D006545 ORTHO05D007985 3.8e-19 97.8 76 76.3
TAR383G1000 Trochodendron aralioides HOM05D006545 ORTHO05D007985 3.8e-19 97.8 76 72.4
unitig_85.g27258 Utricularia gibba HOM05D006545 ORTHO05D007985 3.8e-19 97.8 73 74.0
Lalb_Chr13g0299701 Lupinus albus HOM05D006545 ORTHO05D007985 5.0e-19 97.4 77 71.4
HanXRQChr12g0363181 Helianthus annuus HOM05D006545 ORTHO05D007985 6.5e-19 97.1 76 69.7
Medtr4g126270 Medicago truncatula HOM05D000085 ORTHO05D001460 6.5e-19 97.1 77 74.0
Sc18g0002090 Simmondsia chinensis HOM05D000085 ORTHO05D001460 6.5e-19 97.1 76 71.1
TWI34G0024 Tripterygium wilfordii HOM05D006545 ORTHO05D007985 6.5e-19 97.1 77 70.1
CiPaw.04G149100 Carya illinoinensis HOM05D006545 ORTHO05D007985 8.5e-19 96.7 77 74.0
Dinv36770 Davidia involucrata HOM05D006545 ORTHO05D007985 8.5e-19 96.7 73 75.3
Manes.16G101800 Manihot esculenta HOM05D006545 ORTHO05D007985 1.1e-18 96.3 77 70.1
GSVIVG01015199001 Vitis vinifera HOM05D006545 ORTHO05D007985 1.1e-18 96.3 76 69.7
CsaV3_1G040450 Cucumis sativus L. HOM05D006545 ORTHO05D007985 1.4e-18 95.9 77 68.8
Lsat_1_v5_gn_7_37040 Lactuca sativa HOM05D006545 ORTHO05D007985 1.9e-18 95.5 76 68.4
Eucgr.C00895 Eucalyptus grandis HOM05D006545 ORTHO05D007985 2.5e-18 95.1 72 70.8
FvH4_1g07510 Fragaria vesca HOM05D006545 ORTHO05D007985 2.5e-18 95.1 77 70.1
FAN19G0384 Fragaria x ananassa HOM05D006545 ORTHO05D007985 2.5e-18 95.1 77 70.1
FAN23G2021 Fragaria x ananassa HOM05D006545 ORTHO05D007985 2.5e-18 95.1 77 70.1
FAN26G0590 Fragaria x ananassa HOM05D006545 ORTHO05D007985 2.5e-18 95.1 77 70.1
arahy.Tifrunner.gnm1.ann1.CH1R66 Arachis hypogaea HOM05D006545 ORTHO05D007985 3.2e-18 94.7 77 68.8
arahy.Tifrunner.gnm1.ann1.S1CX09 Arachis hypogaea HOM05D006545 ORTHO05D007985 3.2e-18 94.7 77 68.8
ClCG03G015590 Citrullus lanatus HOM05D006545 ORTHO05D007985 3.2e-18 94.7 77 66.2
Manes.03G034000 Manihot esculenta HOM05D006545 ORTHO05D007985 3.2e-18 94.7 77 71.4
Nitab4.5_0000540g0270 Nicotiana tabacum HOM05D006545 ORTHO05D007985 3.2e-18 94.7 76 72.4
RcHm_v2.0_Chr2g0093401 Rosa chinensis HOM05D006545 ORTHO05D007985 3.2e-18 94.7 77 70.1
TWI63G0169 Tripterygium wilfordii HOM05D006545 ORTHO05D007985 3.2e-18 94.7 77 68.8
vmacro06292 Vaccinium macrocarpon HOM05D006545 ORTHO05D007985 3.2e-18 94.7 73 74.0
EL10Ac8g19212 Beta vulgaris HOM05D006545 ORTHO05D007985 4.2e-18 94.4 76 69.7
MELO3C015473.2 Cucumis melo HOM05D006545 ORTHO05D007985 5.5e-18 94.0 76 68.4
Os06g0567000 Oryza sativa ssp. japonica HOM05D006545 ORTHO05D007985 5.5e-18 94.0 77 67.5
TPR.G9474 Trifolium pratense HOM05D000085 ORTHO05D001460 5.5e-18 94.0 74 74.3
arahy.Tifrunner.gnm1.ann1.MQ59WG Arachis hypogaea HOM05D000085 ORTHO05D001460 9.3e-18 93.2 76 68.4
Cc06_g11430 Coffea canephora HOM05D006545 ORTHO05D007985 9.3e-18 93.2 73 69.9
ECA240G1755 Erigeron canadensis HOM05D006545 ORTHO05D007985 1.2e-17 92.8 76 65.8
Migut.L01494 Erythranthe guttata HOM05D006545 ORTHO05D007985 1.2e-17 92.8 76 67.1
Nitab4.5_0008523g0040 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.2e-17 92.8 76 71.1
Gohir.A13G193400 Gossypium hirsutum HOM05D006545 ORTHO05D007985 1.6e-17 92.4 75 68.0
MBI04_g31162_MAGBIO Magnolia biondii HOM05D006545 ORTHO05D007985 1.6e-17 92.4 76 67.1
Nn8g38862 Nelumbo nucifera HOM05D006545 ORTHO05D007985 1.6e-17 92.4 76 69.7
PSO210G4511 Papaver somniferum HOM05D006545 ORTHO05D007985 1.6e-17 92.4 72 72.2
Sabra06G0115900 Salix brachista HOM05D006545 ORTHO05D007985 1.6e-17 92.4 75 70.7
PGSC0003DMG400000279 Solanum tuberosum HOM05D006545 ORTHO05D007985 1.6e-17 92.4 76 71.1
unitig_699.g19296 Utricularia gibba HOM05D006545 ORTHO05D007985 1.6e-17 92.4 76 68.4
Zm00001eb383910 Zea mays HOM05D006545 ORTHO05D007985 2.7e-17 91.7 77 64.9
Actinidia19138 Actinidia chinensis HOM05D006545 ORTHO05D007985 3.6e-17 91.3 76 69.7
ATR0749G052 Amborella trichopoda HOM05D006545 ORTHO05D007985 3.6e-17 91.3 76 67.1
Solyc12g008860.3 Solanum lycopersicum HOM05D006545 ORTHO05D007985 3.6e-17 91.3 76 69.7
Sopen12g003790 Solanum pennellii HOM05D006545 ORTHO05D007985 3.6e-17 91.3 76 69.7
PSO210G2413 Papaver somniferum HOM05D006545 ORTHO05D007985 4.6e-17 90.9 72 69.4
Potri.006G146800 Populus trichocarpa HOM05D006545 ORTHO05D007985 4.6e-17 90.9 75 69.3
Duzib150G0099 Durio zibethinus HOM05D006545 ORTHO05D007985 6.1e-17 90.5 75 68.0
Duzib168G1224 Durio zibethinus HOM05D006545 ORTHO05D007985 6.1e-17 90.5 75 66.7
Gohir.D13G199200 Gossypium hirsutum HOM05D006545 ORTHO05D007985 6.1e-17 90.5 75 66.7
AUR62033964 Chenopodium quinoa HOM05D006545 ORTHO05D007985 7.9e-17 90.1 76 67.1
MD02G1079700 Malus domestica HOM05D006545 ORTHO05D007985 7.9e-17 90.1 77 66.2
Nitab4.5_0004526g0070 Nicotiana tabacum HOM05D006545 ORTHO05D007985 7.9e-17 90.1 64 78.1
Gohir.A05G030100 Gossypium hirsutum HOM05D006545 ORTHO05D007985 1.3e-16 89.4 75 66.7
Gohir.D05G031500 Gossypium hirsutum HOM05D006545 ORTHO05D007985 1.3e-16 89.4 75 66.7
Gorai.009G031700 Gossypium raimondii HOM05D006545 ORTHO05D007985 1.3e-16 89.4 75 66.7
Sed0026852 Sechium edule HOM05D006545 ORTHO05D007985 1.3e-16 89.4 77 62.3
Thecc.09G088900 Theobroma cacao HOM05D006545 ORTHO05D007985 1.3e-16 89.4 75 66.7
Zm00001eb277360 Zea mays HOM05D006545 ORTHO05D007985 1.3e-16 89.4 76 63.2
AUR62029070 Chenopodium quinoa HOM05D006545 ORTHO05D007985 1.8e-16 89.0 76 65.8
Aqoxy7G01208 Aquilegia oxysepala HOM05D006545 ORTHO05D007985 2.3e-16 88.6 73 69.9
Ah.09g228260 Amaranthus hybridus HOM05D006545 ORTHO05D007985 3.0e-16 88.2 76 65.8
Gorai.013G227700 Gossypium raimondii HOM05D006545 ORTHO05D007985 3.0e-16 88.2 75 65.3
Nitab4.5_0006552g0040 Nicotiana tabacum HOM05D006545 ORTHO05D007985 3.0e-16 88.2 75 66.7
PSO832G3375 Papaver somniferum HOM05D006545 ORTHO05D007985 5.1e-16 87.4 73 65.8
PSO063G6244 Papaver somniferum HOM05D006545 ORTHO05D007985 8.7e-16 86.7 73 65.8
CDE06G0764 Ceratophyllum demersum HOM05D006545 ORTHO05D007985 1.1e-15 86.3 73 68.5
CDE07G1614 Ceratophyllum demersum HOM05D006545 ORTHO05D007985 1.1e-15 86.3 73 68.5
C01p09580 Brassica napus HOM05D000125 ORTHO05D007985 5.7e-15 84.0 63 77.8
Mapoly0003s0235 Marchantia polymorpha HOM05D006545 ORTHO05D007985 9.7e-15 83.2 76 60.5
SalBow5G5008 Salvia bowleyana HOM05D006545 ORTHO05D007985 9.7e-15 83.2 62 75.8
MD15G1207400 Malus domestica HOM05D006545 ORTHO05D007985 6.3e-14 80.5 77 57.1
Pp3c11_23220 Physcomitrium patens HOM05D006545 ORTHO05D007985 1.2e-12 76.3 73 57.5
C01p09620 Brassica napus HOM05D006545 ORTHO05D007985 1.5e-12 75.9 96 57.3
HanXRQChr12g0377121 Helianthus annuus HOM05D006545 ORTHO05D007985 2.0e-12 75.5 55 74.5
HPP92_008778 Vanilla planifolia HOM05D006545 ORTHO05D007985 3.4e-12 74.7 61 65.6
BcaB03g12615 Brassica carinata HOM05D006545 ORTHO05D007985 4.5e-12 74.3 48 79.2
TAR624G0377 Trochodendron aralioides HOM05D002302 ORTHO05D002728 1.7e-11 72.4 65 66.2
Nitab4.5_0004223g0010 Nicotiana tabacum HOM05D006545 ORTHO05D007985 2.2e-11 72.0 60 63.3
SMO361G0088 Selaginella moellendorffii HOM05D006545 ORTHO05D007985 3.8e-11 71.2 75 52.0
A08p19550 Brassica napus HOM05D006545 ORTHO05D007985 6.5e-11 70.5 43 86.0
FAN26G2289 Fragaria x ananassa HOM05D006545 ORTHO05D007985 1.1e-10 69.7 63 60.3
COL.COLO4_18197 Corchorus olitorius HOM05D002302 ORTHO05D002728 5.5e-10 67.4 68 58.8
Rhsim03G0232100 Rhododendron simsii HOM05D000004 ORTHO05D007985 5.5e-10 67.4 47 80.9
Nitab4.5_0000095g0160 Nicotiana tabacum HOM05D006545 ORTHO05D007985 2.1e-09 65.5 71 54.9
Lj7C676T8 Lonicera japonica HOM05D006545 ORTHO05D007985 2.6e-07 58.5 37 83.8


User provided reference genes

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