Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51744 Brassica carinata HOM05D005692 ORTHO05D006953 7.5e-58 226.9 107 100.0
BcaC09g52211 Brassica carinata HOM05D005692 ORTHO05D006953 4.9e-57 224.2 107 98.1
A01p08470 Brassica napus HOM05D005692 ORTHO05D006953 4.9e-57 224.2 107 98.1
C01p09830 Brassica napus HOM05D005692 ORTHO05D006953 4.9e-57 224.2 107 98.1
BolC1t00945H Brassica oleracea HOM05D005692 ORTHO05D006953 4.9e-57 224.2 107 98.1
BraA01t00794Z Brassica rapa HOM05D005692 ORTHO05D006953 4.9e-57 224.2 107 98.1
CARHR237500 Cardamine hirsuta HOM05D005692 ORTHO05D006953 5.0e-54 214.2 101 98.0
AL7G22650 Arabidopsis lyrata HOM05D005692 ORTHO05D006953 4.3e-53 211.1 101 96.0
AT4G29660 Arabidopsis thaliana HOM05D005692 ORTHO05D006953 4.3e-53 211.1 101 96.0
Carub.0007s1086 Capsella rubella HOM05D005692 ORTHO05D006953 5.6e-53 210.7 100 97.0
Thhalv10026646m.g Eutrema salsugineum HOM05D005692 ORTHO05D006953 9.5e-53 209.9 100 95.0
Sp7g27450 Schrenkiella parvula HOM05D005692 ORTHO05D006953 9.5e-53 209.9 101 95.0
Sp3g29900 Schrenkiella parvula HOM05D005692 ORTHO05D006953 6.2e-52 207.2 101 94.1
Aa31LG2G20910 Aethionema arabicum HOM05D005692 ORTHO05D006953 1.3e-49 199.5 101 88.1
THA.LOC104801884 Tarenaya hassleriana HOM05D005692 ORTHO05D006953 2.5e-45 185.3 102 79.4
EL10Ac2g04637 Beta vulgaris HOM05D005692 ORTHO05D006953 9.2e-40 166.8 91 79.1
Cpa.g.sc20.158 Carica papaya HOM05D005692 ORTHO05D006953 3.5e-39 164.9 96 74.0
Sc14g0000750 Simmondsia chinensis HOM05D005692 ORTHO05D006953 3.5e-39 164.9 91 80.2
AUR62039390 Chenopodium quinoa HOM05D005692 ORTHO05D006953 1.3e-38 162.9 91 76.9
Ah.09g223860 Amaranthus hybridus HOM05D005692 ORTHO05D006953 3.9e-38 161.4 91 76.9
Eucgr.C03889 Eucalyptus grandis HOM05D005692 ORTHO05D006953 5.1e-38 161.0 96 71.9
TWI34G0948 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 6.6e-38 160.6 94 74.5
Gohir.A02G019200 Gossypium hirsutum HOM05D005692 ORTHO05D006953 4.3e-37 157.9 93 73.1
Gohir.D02G022500 Gossypium hirsutum HOM05D005692 ORTHO05D006953 4.3e-37 157.9 93 73.1
Gorai.005G027900 Gossypium raimondii HOM05D005692 ORTHO05D006953 4.3e-37 157.9 96 71.9
Hund14283 Selenicereus undatus HOM05D005692 ORTHO05D006953 4.3e-37 157.9 91 73.6
Duzib151G0847 Durio zibethinus HOM05D005692 ORTHO05D006953 5.6e-37 157.5 96 68.8
PGR102G3100 Punica granatum HOM05D005692 ORTHO05D006953 7.3e-37 157.1 91 72.5
MD15G1205700 Malus domestica HOM05D005692 ORTHO05D006953 9.6e-37 156.8 95 72.6
Migut.J00600 Erythranthe guttata HOM05D005692 ORTHO05D006953 1.2e-36 156.4 91 72.5
Migut.J01065 Erythranthe guttata HOM05D005692 ORTHO05D006953 1.2e-36 156.4 91 72.5
Ah.10g037300 Amaranthus hybridus HOM05D005692 ORTHO05D006953 1.6e-36 156.0 91 74.7
COL.COLO4_18212 Corchorus olitorius HOM05D005692 ORTHO05D006953 1.6e-36 156.0 99 66.7
MD02G1077000 Malus domestica HOM05D005692 ORTHO05D006953 1.6e-36 156.0 95 72.6
CAN.G1241.20 Capsicum annuum HOM05D005692 ORTHO05D006953 2.1e-36 155.6 91 72.5
ClCG03G015670 Citrullus lanatus HOM05D005692 ORTHO05D006953 2.1e-36 155.6 94 71.3
MELO3C015461.2 Cucumis melo HOM05D005692 ORTHO05D006953 2.1e-36 155.6 94 71.3
Potri.012G001800 Populus trichocarpa HOM05D005692 ORTHO05D006953 2.1e-36 155.6 89 75.3
Sabra12G0019500 Salix brachista HOM05D005692 ORTHO05D006953 2.1e-36 155.6 89 75.3
Sabra12G0019700 Salix brachista HOM05D005692 ORTHO05D006953 2.1e-36 155.6 89 75.3
Peaxi162Scf00015g00716 Petunia axillaris HOM05D005692 ORTHO05D006953 4.7e-36 154.5 91 72.5
PGSC0003DMG400000281 Solanum tuberosum HOM05D005692 ORTHO05D006953 4.7e-36 154.5 91 72.5
CSS0005546 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 6.2e-36 154.1 96 66.7
CSS0025569 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 6.2e-36 154.1 96 66.7
Ciclev10010392m.g Citrus clementina HOM05D005692 ORTHO05D006953 6.2e-36 154.1 93 69.9
HPP92_009139 Vanilla planifolia HOM05D005692 ORTHO05D006953 6.2e-36 154.1 93 69.9
CsaV3_1G040340 Cucumis sativus L. HOM05D005692 ORTHO05D006953 8.1e-36 153.7 94 69.1
Nn6g35447 Nelumbo nucifera HOM05D005692 ORTHO05D006953 8.1e-36 153.7 91 72.5
Nn8g38892 Nelumbo nucifera HOM05D005692 ORTHO05D006953 8.1e-36 153.7 91 73.6
Nitab4.5_0000540g0260 Nicotiana tabacum HOM05D005692 ORTHO05D006953 8.1e-36 153.7 91 71.4
Nitab4.5_0009931g0010 Nicotiana tabacum HOM05D005692 ORTHO05D006953 8.1e-36 153.7 91 71.4
Prupe.7G211400 Prunus persica HOM05D005692 ORTHO05D006953 8.1e-36 153.7 95 69.5
Manes.03G032800 Manihot esculenta HOM05D005692 ORTHO05D006953 1.1e-35 153.3 93 68.8
Oeu039606.1 Olea europaea HOM05D005692 ORTHO05D006953 1.1e-35 153.3 91 74.7
Sopen12g003750 Solanum pennellii HOM05D005692 ORTHO05D006953 1.1e-35 153.3 91 71.4
Dinv36757 Davidia involucrata HOM05D005692 ORTHO05D006953 1.4e-35 152.9 93 68.8
Atru.BG.21.p Acer truncatum HOM05D005692 ORTHO05D006953 1.8e-35 152.5 89 71.9
Cfa003097 Carpinus fangiana HOM05D005692 ORTHO05D006953 1.8e-35 152.5 93 69.9
DCAR_011984 Daucus carota HOM05D005692 ORTHO05D006953 2.4e-35 152.1 91 68.1
Glyma.08G343600 Glycine max HOM05D005692 ORTHO05D006953 2.4e-35 152.1 96 69.8
Glyma.18G151700 Glycine max HOM05D005692 ORTHO05D006953 2.4e-35 152.1 90 73.3
Solyc12g008810.2 Solanum lycopersicum HOM05D005692 ORTHO05D006953 2.4e-35 152.1 91 70.3
Thecc.09G090700 Theobroma cacao HOM05D005692 ORTHO05D006953 2.4e-35 152.1 93 68.8
TWI32G0831 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 2.4e-35 152.1 94 70.2
Migut.H00760 Erythranthe guttata HOM05D005692 ORTHO05D006953 3.1e-35 151.8 91 70.3
Migut.H01159 Erythranthe guttata HOM05D005692 ORTHO05D006953 3.1e-35 151.8 91 69.2
FvH4_1g07240 Fragaria vesca HOM05D005692 ORTHO05D006953 4.0e-35 151.4 95 69.5
FAN19G2784 Fragaria x ananassa HOM05D005692 ORTHO05D006953 4.0e-35 151.4 95 70.5
FAN26G0193 Fragaria x ananassa HOM05D005692 ORTHO05D006953 4.0e-35 151.4 95 69.5
Psat6g162800 Pisum sativum HOM05D005692 ORTHO05D006953 4.0e-35 151.4 91 73.6
Psat6g183720 Pisum sativum HOM05D005692 ORTHO05D006953 4.0e-35 151.4 91 73.6
CANSAT78G0210 Cannabis sativa HOM05D005692 ORTHO05D006953 5.2e-35 151.0 90 68.9
Ca_07409_v3 Cicer arietinum L. HOM05D005692 ORTHO05D006953 5.2e-35 151.0 91 70.3
Lalb_Chr03g0041061 Lupinus albus HOM05D005692 ORTHO05D006953 5.2e-35 151.0 96 67.7
Phvul.005G056600 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 5.2e-35 151.0 91 70.3
arahy.Tifrunner.gnm1.ann1.JM0M9B Arachis hypogaea HOM05D005692 ORTHO05D006953 9.0e-35 150.2 91 69.2
arahy.Tifrunner.gnm1.ann1.VY1HWT Arachis hypogaea HOM05D005692 ORTHO05D006953 9.0e-35 150.2 91 69.2
Phvul.008G136000 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 9.0e-35 150.2 91 70.3
Sed0014309 Sechium edule HOM05D005692 ORTHO05D006953 9.0e-35 150.2 91 71.4
CiPaw.03G217300 Carya illinoinensis HOM05D005692 ORTHO05D006953 1.5e-34 149.4 93 66.7
AUR62033506 Chenopodium quinoa HOM05D005692 ORTHO05D006953 1.5e-34 149.4 111 62.2
RcHm_v2.0_Chr2g0093151 Rosa chinensis HOM05D005692 ORTHO05D006953 1.5e-34 149.4 95 67.4
Medtr7g051450 Medicago truncatula HOM05D005692 ORTHO05D006953 2.0e-34 149.1 89 70.8
vmacro06285 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 2.0e-34 149.1 91 67.0
vmacro23428 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 2.0e-34 149.1 91 67.0
Nitab4.5_0003152g0130 Nicotiana tabacum HOM05D005692 ORTHO05D006953 2.6e-34 148.7 91 70.3
HanXRQChr12g0354791 Helianthus annuus HOM05D005692 ORTHO05D006953 3.4e-34 148.3 96 61.5
Lj1g0023726 Lotus japonicus HOM05D005692 ORTHO05D006953 3.4e-34 148.3 91 70.3
Psat6g183440 Pisum sativum HOM05D005692 ORTHO05D006953 3.4e-34 148.3 91 72.5
Atru.BG.266.p Acer truncatum HOM05D005692 ORTHO05D006953 4.4e-34 147.9 89 69.7
Cc06_g11300 Coffea canephora HOM05D005692 ORTHO05D006953 4.4e-34 147.9 91 70.3
MBI13_g44212_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 4.4e-34 147.9 97 64.9
Rhsim03G0233100 Rhododendron simsii HOM05D005692 ORTHO05D006953 4.4e-34 147.9 94 62.8
MBI14_g41836_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 5.8e-34 147.5 93 67.7
Medtr7g021900 Medicago truncatula HOM05D005692 ORTHO05D006953 5.8e-34 147.5 89 70.8
GSVIVG01015215001 Vitis vinifera HOM05D005692 ORTHO05D006953 7.6e-34 147.1 94 67.0
Phvul.008G136200 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 9.9e-34 146.7 91 69.2
ECA234G3968 Erigeron canadensis HOM05D005692 ORTHO05D006953 1.3e-33 146.4 93 63.4
TAR626G0225 Trochodendron aralioides HOM05D005692 ORTHO05D006953 1.7e-33 146.0 89 71.9
Duzib187G1084 Durio zibethinus HOM05D005692 ORTHO05D006953 2.2e-33 145.6 93 65.6
HanXRQChr10g0319271 Helianthus annuus HOM05D005692 ORTHO05D006953 2.2e-33 145.6 93 63.4
Psat6g183640 Pisum sativum HOM05D005692 ORTHO05D006953 2.2e-33 145.6 91 71.4
SGA_v2.0_scaffold62G21600 Striga asiatica HOM05D005692 ORTHO05D006953 2.2e-33 145.6 91 70.3
FAN23G0510 Fragaria x ananassa HOM05D005692 ORTHO05D006953 3.8e-33 144.8 90 68.9
FAN26G1568 Fragaria x ananassa HOM05D005692 ORTHO05D006953 3.8e-33 144.8 90 68.9
unitig_748.g8121 Utricularia gibba HOM05D005692 ORTHO05D006953 6.4e-33 144.1 91 69.2
Actinidia29885 Actinidia chinensis HOM05D003753 ORTHO05D005081 8.4e-33 143.7 101 62.4
FvH4_1g24820 Fragaria vesca HOM05D005692 ORTHO05D006953 8.4e-33 143.7 95 68.4
SGA_v2.0_scaffold852G53671 Striga asiatica HOM05D005692 ORTHO05D006953 1.4e-32 142.9 91 69.2
FAN19G0937 Fragaria x ananassa HOM05D005692 ORTHO05D006953 3.2e-32 141.7 86 69.8
Duzib187G0878 Durio zibethinus HOM05D005692 ORTHO05D006953 4.2e-32 141.4 93 66.7
PSO210G0626 Papaver somniferum HOM05D005692 ORTHO05D006953 4.2e-32 141.4 89 67.4
PSO210G2337 Papaver somniferum HOM05D005692 ORTHO05D006953 4.2e-32 141.4 89 67.4
Lsat_1_v5_gn_5_145440 Lactuca sativa HOM05D005692 ORTHO05D006953 2.7e-31 138.7 90 62.2
VMungo1383G2743 Vigna mungo HOM05D005692 ORTHO05D006953 3.5e-31 138.3 113 57.5
SGA_v2.0_scaffold33G13431 Striga asiatica HOM05D005692 ORTHO05D006953 6.0e-31 137.5 95 65.3
Nitab4.5_0003079g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 5.1e-30 134.4 78 71.8
ATR0602G199 Amborella trichopoda HOM05D005692 ORTHO05D006953 1.1e-29 133.3 91 63.7
Aqoxy4G03142 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 1.9e-29 132.5 87 64.4
Os05g0540200 Oryza sativa ssp. japonica HOM05D005692 ORTHO05D006953 2.5e-29 132.1 87 63.2
SHI00379 Sapria himalayana HOM05D005692 ORTHO05D006953 3.3e-29 131.7 78 71.8
Peaxi162Scf00354g00223 Petunia axillaris HOM05D005692 ORTHO05D006953 1.6e-28 129.4 89 64.0
Nitab4.5_0000095g0140 Nicotiana tabacum HOM05D005692 ORTHO05D006953 2.4e-27 125.6 98 58.2
Peaxi162Scf00498g00124 Petunia axillaris HOM05D005692 ORTHO05D006953 9.0e-27 123.6 67 77.6
Nitab4.5_0008958g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 1.7e-25 119.4 78 69.2
Nitab4.5_0004795g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 2.9e-25 118.6 80 66.2
CDE06G0459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 3.2e-24 115.2 76 65.8
Aqoxy1G00378 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 1.3e-22 109.8 85 55.3
CDE06G1459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 3.9e-22 108.2 69 69.6
SHI21206 Sapria himalayana HOM05D005692 ORTHO05D006953 3.9e-22 108.2 62 71.0
TPR.G24304 Trifolium pratense HOM05D005692 ORTHO05D006953 1.4e-19 99.8 207 30.9
Psat0s10921g0080 Pisum sativum HOM05D005692 ORTHO05D006953 2.6e-18 95.5 61 70.5
FAN19G3189 Fragaria x ananassa HOM05D005692 ORTHO05D006953 2.9e-17 92.0 74 58.1
SGA_v2.0_scaffold33G13433 Striga asiatica HOM05D000524 ORTHO05D000381 3.8e-17 91.7 61 70.5
Mapoly0063s0096 Marchantia polymorpha HOM05D005692 ORTHO05D006953 3.0e-14 82.0 68 51.5
CBR_g36562 Chara braunii HOM05D005692 ORTHO05D006953 1.5e-13 79.7 68 47.1
Zm00001eb294300 Zea mays HOM05D005692 ORTHO05D006953 3.1e-11 72.0 61 54.1
Haze_25902 Corylus avellana HOM05D001256 ORTHO05D001141 2.5e-08 62.4 38 60.5
Pp3c13_20310 Physcomitrium patens HOM05D005692 ORTHO05D006953 4.6e-07 58.2 58 41.4


User provided reference genes

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