Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 1.7e-114 416.0 209 100.0
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 1.7e-114 416.0 209 100.0
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 1.1e-113 413.3 209 99.5
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 4.2e-113 411.4 209 97.6
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 4.2e-113 411.4 209 98.1
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 1.2e-112 409.8 209 97.1
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 7.9e-112 407.1 208 97.1
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 7.9e-112 407.1 209 96.7
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 1.0e-111 406.8 209 95.7
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 3.0e-111 405.2 209 95.2
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 2.0e-110 402.5 209 96.2
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 9.7e-110 400.2 209 95.7
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 9.7e-110 400.2 209 94.3
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 8.2e-109 397.1 209 95.2
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 1.8e-108 396.0 207 94.7
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 1.8e-108 396.0 209 94.7
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 1.0e-106 390.2 209 92.3
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 1.0e-98 363.6 205 86.8
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 7.5e-94 347.4 208 81.2
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 2.8e-93 345.5 209 79.4
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 1.1e-92 343.6 207 79.2
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 1.1e-92 343.6 208 78.4
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 3.1e-92 342.0 208 78.8
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 3.1e-92 342.0 206 80.1
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 4.1e-92 341.7 206 80.1
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 5.3e-92 341.3 206 81.1
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 7.0e-92 340.9 207 78.3
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 7.0e-92 340.9 209 78.5
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 3.5e-91 338.6 206 79.6
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 4.5e-91 338.2 206 78.6
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 1.0e-90 337.0 205 78.5
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 1.3e-90 336.7 208 76.9
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 1.7e-90 336.3 205 80.5
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 1.7e-90 336.3 208 78.4
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 2.2e-90 335.9 206 77.7
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 2.2e-90 335.9 205 79.0
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 2.2e-90 335.9 208 77.9
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 2.9e-90 335.5 208 77.9
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 5.0e-90 334.7 208 77.9
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 5.0e-90 334.7 208 76.0
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 8.5e-90 334.0 208 77.4
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 1.1e-89 333.6 205 78.5
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 1.1e-89 333.6 205 78.5
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.1e-89 333.6 208 77.9
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 1.1e-89 333.6 205 76.6
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 1.5e-89 333.2 208 76.9
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 1.9e-89 332.8 209 76.1
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 1.9e-89 332.8 208 75.5
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 1.9e-89 332.8 205 77.6
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 2.5e-89 332.4 207 77.3
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 3.2e-89 332.0 208 76.4
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 3.2e-89 332.0 208 75.5
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 4.2e-89 331.6 207 76.3
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 4.2e-89 331.6 208 76.4
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 5.5e-89 331.3 208 76.9
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 9.4e-89 330.5 208 75.5
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 9.4e-89 330.5 207 76.3
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.2e-88 330.1 205 76.1
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 1.2e-88 330.1 212 77.8
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 1.2e-88 330.1 208 75.5
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 1.2e-88 330.1 207 76.8
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 1.6e-88 329.7 209 80.4
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 1.6e-88 329.7 207 76.8
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 2.1e-88 329.3 208 76.0
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 2.1e-88 329.3 205 77.1
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 2.7e-88 328.9 205 76.6
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 3.6e-88 328.6 208 75.5
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 4.7e-88 328.2 206 77.2
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 6.1e-88 327.8 206 77.2
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 8.0e-88 327.4 205 75.1
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 1.8e-87 326.2 213 74.2
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 2.3e-87 325.9 206 76.7
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 2.3e-87 325.9 207 76.3
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 4.0e-87 325.1 206 76.2
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 4.0e-87 325.1 206 76.2
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 4.0e-87 325.1 205 74.6
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 5.2e-87 324.7 205 77.1
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 2.6e-86 322.4 206 76.7
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 7.5e-86 320.9 227 70.0
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 9.8e-86 320.5 205 75.1
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 2.2e-85 319.3 205 73.7
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 2.4e-84 315.8 215 71.2
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 9.1e-84 313.9 205 73.2
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.6e-83 313.2 205 73.2
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 1.6e-83 313.2 205 76.1
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 2.3e-82 309.3 203 72.9
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 2.9e-82 308.9 210 71.0
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.5e-81 306.6 209 71.8
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 9.5e-81 303.9 186 76.3
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 9.5e-81 303.9 208 70.2
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 8.9e-79 297.4 203 71.4
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 1.7e-77 293.1 178 79.8
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 3.7e-77 292.0 203 69.0
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 3.7e-77 292.0 205 67.8
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 1.4e-76 290.0 207 69.1
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 9.2e-76 287.3 208 70.2
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 9.2e-76 287.3 213 65.3
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 2.0e-75 286.2 208 69.7
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.7e-74 283.1 203 67.5
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.1e-73 280.4 203 67.0
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.3e-69 266.9 170 74.7
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 2.7e-67 259.2 166 72.9
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 2.3e-66 256.1 170 71.2
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 1.5e-65 253.4 189 67.2
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 4.3e-65 251.9 159 77.4
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 4.4e-62 241.9 157 75.8
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 5.8e-62 241.5 157 74.5
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 9.8e-62 240.7 251 51.4
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 2.8e-56 222.6 212 54.2
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 4.7e-56 221.9 191 59.2
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 3.1e-55 219.2 135 77.0
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.3e-50 203.8 208 51.0
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 1.6e-48 196.8 182 54.4
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 1.1e-47 194.1 152 65.1
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 4.9e-45 185.3 123 74.8
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 4.9e-45 185.3 123 74.8
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 9.2e-44 181.0 210 48.6
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 1.3e-40 170.6 142 62.7
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 1.7e-37 160.2 223 42.2
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 1.7e-37 160.2 223 42.2
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 3.5e-35 152.5 95 77.9
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 2.4e-28 129.8 196 38.3
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 1.0e-26 124.4 89 71.9
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 2.1e-19 100.1 104 51.9
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 2.7e-19 99.8 65 67.7
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 8.2e-16 88.2 53 81.1
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.8e-15 87.0 52 75.0
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.8e-15 87.0 51 76.5
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 1.8e-15 87.0 77 58.4
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 2.2e-13 80.1 65 63.1
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 7.9e-11 71.6 57 63.2
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 3.9e-10 69.3 57 59.6
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 8.7e-10 68.2 47 70.2
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 1.1e-09 67.8 39 84.6
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 6.3e-08 62.0 134 36.6
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 1.4e-07 60.8 39 82.1
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 5.9e-06 55.5 34 76.5


User provided reference genes

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