Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51656 Brassica carinata HOM05D000411 ORTHO05D090636 1.1e-45 186.4 106 100.0
BolC1t01057H Brassica oleracea HOM05D000411 ORTHO05D000310 1.1e-45 186.4 106 100.0
BcaNung04286 Brassica carinata HOM05D000411 ORTHO05D000310 5.4e-40 167.5 101 96.0
A01p09360 Brassica napus HOM05D000411 ORTHO05D000310 9.2e-40 166.8 106 92.5
C01p10930 Brassica napus HOM05D000411 ORTHO05D000310 9.2e-40 166.8 106 92.5
BraA01t00882Z Brassica rapa HOM05D000411 ORTHO05D000310 9.2e-40 166.8 106 92.5
Sp7g26520 Schrenkiella parvula HOM05D000411 ORTHO05D000310 2.0e-39 165.6 106 88.7
BcaNung04287 Brassica carinata HOM05D000411 ORTHO05D090686 2.7e-39 165.2 100 96.0
Thhalv10025069m.g Eutrema salsugineum HOM05D000411 ORTHO05D000310 1.0e-38 163.3 106 86.8
A03p58280 Brassica napus HOM05D000411 ORTHO05D000310 3.8e-38 161.4 106 86.8
C07p56310 Brassica napus HOM05D000411 ORTHO05D000310 3.8e-38 161.4 106 86.8
BolC7t46110H Brassica oleracea HOM05D000411 ORTHO05D000310 3.8e-38 161.4 106 86.8
CARHR236320 Cardamine hirsuta HOM05D000411 ORTHO05D000310 8.6e-38 160.2 106 84.9
BcaC07g38339 Brassica carinata HOM05D000411 ORTHO05D000310 3.3e-37 158.3 106 83.0
C08p10930 Brassica napus HOM05D000411 ORTHO05D000310 3.3e-37 158.3 106 83.0
AT4G28540 Arabidopsis thaliana HOM05D000411 ORTHO05D000310 2.1e-36 155.6 106 84.9
AL7G24010 Arabidopsis lyrata HOM05D000411 ORTHO05D000310 1.4e-35 152.9 106 84.0
BraA08t33959Z Brassica rapa HOM05D000411 ORTHO05D000310 2.3e-35 152.1 107 80.4
Carub.0007s1214 Capsella rubella HOM05D000411 ORTHO05D000310 3.0e-35 151.8 106 82.1
BraA03t14891Z Brassica rapa HOM05D000411 ORTHO05D000310 7.5e-34 147.1 108 81.5
BcaB03g12579 Brassica carinata HOM05D000411 ORTHO05D000310 2.3e-30 135.6 108 77.8
BolC8t48765H Brassica oleracea HOM05D000411 ORTHO05D001673 2.8e-28 128.6 91 79.1
Aa31LG2G21860 Aethionema arabicum HOM05D000411 ORTHO05D000310 1.6e-23 112.8 112 64.3
BcaC07g38342 Brassica carinata HOM05D001196 ORTHO05D001673 9.5e-21 103.6 91 73.6
Cpa.g.sc165.23 Carica papaya HOM05D000411 ORTHO05D000310 5.8e-18 94.4 98 62.2
BcaC06g32612 Brassica carinata HOM05D000411 ORTHO05D000310 2.2e-17 92.4 109 58.7
THA.LOC104815966 Tarenaya hassleriana HOM05D000411 ORTHO05D000310 1.5e-10 69.7 101 52.5
Lalb_Chr01g0019601 Lupinus albus HOM05D000411 ORTHO05D000310 4.4e-10 68.2 102 52.9
TWI75G1326 Tripterygium wilfordii HOM05D000411 ORTHO05D000310 7.6e-10 67.4 98 52.0
BcaC07g38340 Brassica carinata HOM05D001196 ORTHO05D001673 1.3e-09 66.6 44 79.5
Ciclev10020024m.g Citrus clementina HOM05D000411 ORTHO05D000310 1.7e-09 66.2 103 51.5
THA.LOC104808634 Tarenaya hassleriana HOM05D000411 ORTHO05D000310 2.9e-09 65.5 95 49.5
Duzib151G0021 Durio zibethinus HOM05D000411 ORTHO05D000310 1.1e-08 63.5 99 50.5
CiPaw.03G266800 Carya illinoinensis HOM05D000411 ORTHO05D000310 1.9e-08 62.8 102 50.0
Ciclev10004925m.g Citrus clementina HOM05D000411 ORTHO05D000310 2.4e-08 62.4 95 49.5
TAR362G0015 Trochodendron aralioides HOM05D000411 ORTHO05D000310 2.4e-08 62.4 95 54.7
Manes.12G034100 Manihot esculenta HOM05D000411 ORTHO05D000310 3.2e-08 62.0 97 49.5
Sp1g02790 Schrenkiella parvula HOM05D000411 ORTHO05D000310 3.2e-08 62.0 103 51.5
Lj1g0022446 Lotus japonicus HOM05D000411 ORTHO05D000310 5.4e-08 61.2 98 53.1
Aa31LG5G3170 Aethionema arabicum HOM05D000411 ORTHO05D000310 7.1e-08 60.8 101 47.5
Nn1g02825 Nelumbo nucifera HOM05D000411 ORTHO05D000310 9.2e-08 60.5 95 53.7
Potri.005G226900 Populus trichocarpa HOM05D000411 ORTHO05D000310 9.2e-08 60.5 97 49.5
Prupe.1G040700 Prunus persica HOM05D000411 ORTHO05D000310 9.2e-08 60.5 95 50.5
arahy.Tifrunner.gnm1.ann1.2G4T7X Arachis hypogaea HOM05D000411 ORTHO05D000310 1.2e-07 60.1 97 48.5
arahy.Tifrunner.gnm1.ann1.ND79ZZ Arachis hypogaea HOM05D000411 ORTHO05D000310 1.2e-07 60.1 97 48.5
Aqoxy5G00205 Aquilegia oxysepala HOM05D000411 ORTHO05D000310 1.6e-07 59.7 94 46.8
AUR62002152 Chenopodium quinoa HOM05D000411 ORTHO05D000310 1.6e-07 59.7 94 54.3
Lj6C634G5 Lonicera japonica HOM05D000411 ORTHO05D000310 1.6e-07 59.7 94 53.2
ClCG07G001180 Citrullus lanatus HOM05D000411 ORTHO05D000310 2.1e-07 59.3 99 50.5
Haze_11398 Corylus avellana HOM05D000411 ORTHO05D000310 2.1e-07 59.3 94 51.1
Cfa022944 Carpinus fangiana HOM05D000411 ORTHO05D000310 2.7e-07 58.9 94 51.1
TAR636G2009 Trochodendron aralioides HOM05D000411 ORTHO05D000310 2.7e-07 58.9 96 52.1
Lsat_1_v5_gn_9_10560 Lactuca sativa HOM05D000411 ORTHO05D000310 3.5e-07 58.5 98 51.0
Nn3g19699 Nelumbo nucifera HOM05D000411 ORTHO05D000310 3.5e-07 58.5 95 50.5
Sabra02G0029200 Salix brachista HOM05D000411 ORTHO05D000310 3.5e-07 58.5 97 49.5
COL.COLO4_15890 Corchorus olitorius HOM05D000411 ORTHO05D000310 4.6e-07 58.2 95 47.4
AUR62015555 Chenopodium quinoa HOM05D000411 ORTHO05D000310 6.0e-07 57.8 94 53.2
Gohir.D02G046000 Gossypium hirsutum HOM05D000411 ORTHO05D000310 6.0e-07 57.8 95 46.3
CSS0044423 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 7.8e-07 57.4 95 51.6
Gohir.A02G039800 Gossypium hirsutum HOM05D000411 ORTHO05D000310 7.8e-07 57.4 95 45.3
TPR.G9207 Trifolium pratense HOM05D000411 ORTHO05D000310 7.8e-07 57.4 98 51.0
Gorai.005G050700 Gossypium raimondii HOM05D000411 ORTHO05D000310 1.0e-06 57.0 95 46.3
Lj3C692G12 Lonicera japonica HOM05D000411 ORTHO05D000310 1.0e-06 57.0 101 49.5
Potri.002G036000 Populus trichocarpa HOM05D000411 ORTHO05D000310 1.0e-06 57.0 97 48.5
Prupe.8G220400 Prunus persica HOM05D000411 ORTHO05D000310 1.0e-06 57.0 99 46.5
Thecc.01G255000 Theobroma cacao HOM05D000411 ORTHO05D000310 1.3e-06 56.6 99 51.5
CANSAT01G1222 Cannabis sativa HOM05D000411 ORTHO05D000310 1.7e-06 56.2 98 46.9
Carub.0001s0308 Capsella rubella HOM05D000411 ORTHO05D000310 1.7e-06 56.2 100 48.0
CAN.G1070.7 Capsicum annuum HOM05D000411 ORTHO05D000310 1.7e-06 56.2 98 51.0
DCAR_027323 Daucus carota HOM05D000411 ORTHO05D000310 1.7e-06 56.2 103 47.6
ECA240G3699 Erigeron canadensis HOM05D000411 ORTHO05D000310 1.7e-06 56.2 97 52.6
SalBow3G3390 Salvia bowleyana HOM05D000411 ORTHO05D000310 1.7e-06 56.2 99 51.5
VMungo1383G2580 Vigna mungo HOM05D000411 ORTHO05D000310 1.7e-06 56.2 98 51.0
FvH4_2g21160 Fragaria vesca HOM05D000411 ORTHO05D000310 2.3e-06 55.8 98 50.0
Hma1.2p1_0112F.1_g054150 Hydrangea macrophylla HOM05D000411 ORTHO05D000310 2.3e-06 55.8 95 49.5
Lsat_1_v5_gn_3_116780 Lactuca sativa HOM05D000411 ORTHO05D000310 2.3e-06 55.8 90 53.3
Psat3g056280 Pisum sativum HOM05D000411 ORTHO05D000310 2.3e-06 55.8 98 49.0
Rhsim02G0040400 Rhododendron simsii HOM05D000411 ORTHO05D000310 2.3e-06 55.8 95 51.6
Sopen09g033150 Solanum pennellii HOM05D000411 ORTHO05D000310 2.3e-06 55.8 95 50.5
Glyma.19G166100 Glycine max HOM05D000411 ORTHO05D000310 3.0e-06 55.5 98 50.0
Manes.13G036000 Manihot esculenta HOM05D000411 ORTHO05D000310 3.0e-06 55.5 97 45.4
QL09p039737 Quercus lobata HOM05D000411 ORTHO05D000310 3.0e-06 55.5 98 45.9
Carub.0008s0443 Capsella rubella HOM05D000411 ORTHO05D000310 3.9e-06 55.1 107 49.5
COL.COLO4_04017 Corchorus olitorius HOM05D000411 ORTHO05D000310 3.9e-06 55.1 99 53.5
PGR004G2746 Punica granatum HOM05D000411 ORTHO05D000310 3.9e-06 55.1 100 46.0
Hund03050 Selenicereus undatus HOM05D000411 ORTHO05D000310 3.9e-06 55.1 96 51.0
Solyc09g090250.4 Solanum lycopersicum HOM05D000411 ORTHO05D000310 3.9e-06 55.1 95 50.5
CAN.G1634.13 Capsicum annuum HOM05D000411 ORTHO05D000310 5.1e-06 54.7 95 49.5
HanXRQChr03g0091531 Helianthus annuus HOM05D000411 ORTHO05D000310 5.1e-06 54.7 97 52.6
TWI12G1199 Tripterygium wilfordii HOM05D000411 ORTHO05D000310 6.6e-06 54.3 98 46.9
EL10Ac3g04992 Beta vulgaris HOM05D000411 ORTHO05D000310 8.6e-06 53.9 94 54.3
Gohir.A07G150000 Gossypium hirsutum HOM05D000411 ORTHO05D000310 8.6e-06 53.9 99 51.5
Peaxi162Scf00041g02617 Petunia axillaris HOM05D000411 ORTHO05D000310 8.6e-06 53.9 95 49.5
vmacro15451 Vaccinium macrocarpon HOM05D000411 ORTHO05D000310 8.6e-06 53.9 95 51.6


User provided reference genes

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