Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51632 Brassica carinata HOM05D006859 ORTHO05D007990 1.8e-146 522.7 294 100.0
C01p11190 Brassica napus HOM05D006859 ORTHO05D007990 2.2e-139 499.2 292 97.6
BolC1t01085H Brassica oleracea HOM05D006859 ORTHO05D007990 8.2e-139 497.3 292 96.9
A01p09620 Brassica napus HOM05D006859 ORTHO05D007990 4.4e-132 474.9 295 93.2
BraA01t00904Z Brassica rapa HOM05D006859 ORTHO05D007990 2.4e-130 469.2 296 91.9
BcaNung00082 Brassica carinata HOM05D006859 ORTHO05D007990 2.2e-123 446.0 297 87.5
Sp7g16620 Schrenkiella parvula HOM05D006859 ORTHO05D007990 5.5e-119 431.4 281 88.3
Thhalv10025654m.g Eutrema salsugineum HOM05D006859 ORTHO05D007990 2.8e-115 419.1 278 87.4
Carub.0007s2385 Capsella rubella HOM05D006859 ORTHO05D007990 4.1e-114 415.2 293 82.6
AT4G17540 Arabidopsis thaliana HOM05D006859 ORTHO05D007990 7.0e-114 414.5 286 84.3
CARHR224240 Cardamine hirsuta HOM05D006859 ORTHO05D007990 1.1e-111 407.1 287 83.3
AL7G37080 Arabidopsis lyrata HOM05D006859 ORTHO05D007990 1.2e-86 323.9 225 82.7
THA.LOC104798356 Tarenaya hassleriana HOM05D006859 ORTHO05D007990 7.1e-74 281.6 293 62.5
Aa31LG6G280 Aethionema arabicum HOM05D006859 ORTHO05D007990 1.1e-69 267.7 295 60.7
Sabra03G0053000 Salix brachista HOM05D006859 ORTHO05D007990 6.7e-56 221.9 320 47.8
Dinv28858 Davidia involucrata HOM05D006859 ORTHO05D007990 1.9e-55 220.3 304 47.7
Gohir.D08G184600 Gossypium hirsutum HOM05D006859 ORTHO05D007990 1.9e-55 220.3 293 49.8
Gorai.004G193900 Gossypium raimondii HOM05D006859 ORTHO05D007990 2.5e-55 219.9 293 49.8
Potri.003G082200 Populus trichocarpa HOM05D006859 ORTHO05D007990 3.3e-55 219.5 319 47.3
Gohir.A08G165800 Gossypium hirsutum HOM05D006859 ORTHO05D007990 5.6e-55 218.8 293 49.8
Prupe.5G059200 Prunus persica HOM05D006859 ORTHO05D007990 5.6e-55 218.8 314 46.2
MD00G1165000 Malus domestica HOM05D006859 ORTHO05D007990 7.4e-55 218.4 304 49.7
Ciclev10021440m.g Citrus clementina HOM05D006859 ORTHO05D007990 1.2e-52 211.1 271 49.1
Eucgr.D02124 Eucalyptus grandis HOM05D006859 ORTHO05D007990 3.4e-52 209.5 324 45.4
Duzib068G0861 Durio zibethinus HOM05D006859 ORTHO05D007990 4.5e-52 209.1 320 46.2
MELO3C003330.2 Cucumis melo HOM05D006859 ORTHO05D007990 5.8e-52 208.8 317 45.7
Duzib205G1414 Durio zibethinus HOM05D006859 ORTHO05D007990 1.3e-51 207.6 294 46.9
CANSAT21G2559 Cannabis sativa HOM05D006859 ORTHO05D007990 1.7e-51 207.2 309 46.0
RcHm_v2.0_Chr7g0205091 Rosa chinensis HOM05D006859 ORTHO05D007990 1.7e-51 207.2 312 46.8
FvH4_5g20140 Fragaria vesca HOM05D006859 ORTHO05D007990 4.9e-51 205.7 291 48.1
PGR031G1874 Punica granatum HOM05D006859 ORTHO05D007990 4.9e-51 205.7 318 47.5
FAN08G0582 Fragaria x ananassa HOM05D006859 ORTHO05D007990 2.4e-50 203.4 292 48.3
CSS0046225 Camellia sinensis var. sinensis HOM05D006859 ORTHO05D007990 5.5e-50 202.2 287 48.4
TPR.G31422 Trifolium pratense HOM05D006859 ORTHO05D007990 7.1e-50 201.8 282 49.6
Hund11327 Selenicereus undatus HOM05D006859 ORTHO05D007990 3.5e-49 199.5 308 45.8
FAN18G2706 Fragaria x ananassa HOM05D006859 ORTHO05D007990 7.9e-49 198.4 292 47.3
QL12p009356 Quercus lobata HOM05D006859 ORTHO05D007990 7.9e-49 198.4 293 47.1
Actinidia25901 Actinidia chinensis HOM05D006859 ORTHO05D007990 1.0e-48 198.0 280 49.3
PSO675G5712 Papaver somniferum HOM05D006859 ORTHO05D007990 1.3e-48 197.6 296 49.3
PSO717G0098 Papaver somniferum HOM05D006859 ORTHO05D007990 1.3e-48 197.6 294 49.0
Aqoxy7G00861 Aquilegia oxysepala HOM05D006859 ORTHO05D007990 1.8e-48 197.2 296 48.3
VMungo1215G2710 Vigna mungo HOM05D006859 ORTHO05D007990 1.8e-48 197.2 307 46.3
Cpa.g.sc89.10 Carica papaya HOM05D006859 ORTHO05D007990 3.0e-48 196.4 308 45.8
MD04G1050900 Malus domestica HOM05D006859 ORTHO05D007990 3.0e-48 196.4 282 47.9
Manes.01G086700 Manihot esculenta HOM05D006859 ORTHO05D007990 5.1e-48 195.7 313 45.7
Phvul.002G001000 Phaseolus vulgaris HOM05D006859 ORTHO05D007990 5.1e-48 195.7 294 45.2
Cc08_g11510 Coffea canephora HOM05D006859 ORTHO05D007990 6.7e-48 195.3 311 44.4
Atru.chr9.1231 Acer truncatum HOM05D006859 ORTHO05D007990 1.1e-47 194.5 317 45.1
FAN04G1798 Fragaria x ananassa HOM05D006859 ORTHO05D007990 1.9e-47 193.7 290 46.2
HanXRQChr06g0164541 Helianthus annuus HOM05D006859 ORTHO05D007990 4.3e-47 192.6 294 46.9
TAR636G0545 Trochodendron aralioides HOM05D006859 ORTHO05D007990 5.6e-47 192.2 311 46.3
Medtr5g013280 Medicago truncatula HOM05D006859 ORTHO05D007990 7.4e-47 191.8 288 47.2
Lj2g0014108 Lotus japonicus HOM05D006859 ORTHO05D007990 9.6e-47 191.4 300 45.0
Migut.A01048 Erythranthe guttata HOM05D006859 ORTHO05D007990 3.7e-46 189.5 312 44.6
EL10Ac5g12291 Beta vulgaris HOM05D006859 ORTHO05D007990 1.1e-45 188.0 319 44.2
vmacro00041 Vaccinium macrocarpon HOM05D006859 ORTHO05D007990 1.8e-45 187.2 288 46.5
Nn1g00823 Nelumbo nucifera HOM05D006859 ORTHO05D007990 3.1e-45 186.4 290 44.8
Lsat_1_v5_gn_1_53480 Lactuca sativa HOM05D006859 ORTHO05D007990 1.2e-44 184.5 284 45.4
TWI15G0070 Tripterygium wilfordii HOM05D006859 ORTHO05D007990 2.6e-44 183.3 320 41.6
RhsimUnG0092900 Rhododendron simsii HOM05D006859 ORTHO05D007990 4.5e-44 182.6 307 45.6
MBI04_g28364_MAGBIO Magnolia biondii HOM05D006859 ORTHO05D007990 1.0e-43 181.4 294 45.2
Glyma.01G205600 Glycine max HOM05D006859 ORTHO05D007990 1.3e-43 181.0 304 45.4
Oeu017213.1 Olea europaea HOM05D006859 ORTHO05D007990 2.2e-43 180.3 293 44.4
CsaV3_3G049860 Cucumis sativus L. HOM05D006859 ORTHO05D007990 4.2e-42 176.0 309 44.3
Zm00001eb391020 Zea mays HOM05D006859 ORTHO05D007990 2.1e-41 173.7 276 47.1
ECA236G3610 Erigeron canadensis HOM05D006859 ORTHO05D007990 6.0e-41 172.2 243 48.6
Os10g0563400 Oryza sativa ssp. japonica HOM05D006859 ORTHO05D007990 7.9e-41 171.8 286 43.4
Psat2g176200 Pisum sativum HOM05D006859 ORTHO05D007990 6.7e-40 168.7 278 46.4
Lalb_Chr16g0379391 Lupinus albus HOM05D006859 ORTHO05D007990 3.3e-39 166.4 290 44.1
ATR0665G206 Amborella trichopoda HOM05D006859 ORTHO05D007990 1.8e-37 160.6 286 42.0
Gohir.D03G167400 Gossypium hirsutum HOM05D006859 ORTHO05D007990 3.1e-37 159.8 247 42.1
unitig_8.g3018 Utricularia gibba HOM05D000481 ORTHO05D007990 1.2e-36 157.9 288 43.1
CiPaw.11G069300 Carya illinoinensis HOM05D006859 ORTHO05D007990 2.0e-36 157.1 256 42.6
Actinidia02186 Actinidia chinensis HOM05D006859 ORTHO05D007990 1.3e-35 154.5 264 47.0
Gohir.A03G005200 Gossypium hirsutum HOM05D006859 ORTHO05D007990 1.3e-35 154.5 246 41.9
Lj2C227G12 Lonicera japonica HOM05D006859 ORTHO05D007990 2.2e-35 153.7 250 42.8
Gorai.003G177100 Gossypium raimondii HOM05D006859 ORTHO05D007990 5.0e-35 152.5 247 38.5
arahy.Tifrunner.gnm1.ann1.B2NILF Arachis hypogaea HOM05D006859 ORTHO05D007990 2.5e-34 150.2 312 40.7
arahy.Tifrunner.gnm1.ann1.WYE05V Arachis hypogaea HOM05D006859 ORTHO05D007990 2.5e-34 150.2 312 40.7
HPP92_014892 Vanilla planifolia HOM05D006859 ORTHO05D007990 4.2e-34 149.4 294 40.1
DCAR_004596 Daucus carota HOM05D006859 ORTHO05D007990 1.2e-33 147.9 256 42.6
PGSC0003DMG400024153 Solanum tuberosum HOM05D006859 ORTHO05D007990 2.7e-33 146.7 343 37.3
Glyma.11G037300 Glycine max HOM05D006859 ORTHO05D007990 9.7e-31 138.3 222 41.0
Thecc.03G243500 Theobroma cacao HOM05D006859 ORTHO05D007990 1.6e-30 137.5 213 46.9
Cfa012667 Carpinus fangiana HOM05D006859 ORTHO05D007990 8.2e-30 135.2 295 38.6
Nitab4.5_0000506g0100 Nicotiana tabacum HOM05D006859 ORTHO05D007990 1.1e-29 134.8 272 40.1
Nitab4.5_0003456g0040 Nicotiana tabacum HOM05D006859 ORTHO05D007990 1.8e-29 134.0 313 38.0
Sopen06g021040 Solanum pennellii HOM05D006859 ORTHO05D007990 4.1e-29 132.9 278 38.8
ClCG09G012800 Citrullus lanatus HOM05D006859 ORTHO05D007990 1.5e-28 131.0 246 40.2
Sc01g0008110 Simmondsia chinensis HOM05D006859 ORTHO05D007990 7.7e-28 128.6 230 41.3
SalBow6G1554 Salvia bowleyana HOM05D006859 ORTHO05D007990 3.8e-27 126.3 259 42.1
AUR62018861 Chenopodium quinoa HOM05D006859 ORTHO05D007990 5.0e-27 125.9 234 40.6
SGA_v2.0_scaffold199G41240 Striga asiatica HOM05D006859 ORTHO05D007990 4.6e-25 119.4 250 42.0
Solyc06g060890.4 Solanum lycopersicum HOM05D006859 ORTHO05D007990 2.3e-24 117.1 256 36.3
Ca_24604_v3 Cicer arietinum L. HOM05D006859 ORTHO05D007990 3.0e-24 116.7 280 36.4
CDE11G0841 Ceratophyllum demersum HOM05D006859 ORTHO05D007990 6.7e-24 115.5 221 43.0
GSVIVG01007347001 Vitis vinifera HOM05D006859 ORTHO05D007990 8.2e-22 108.6 79 69.6
Sed0000052 Sechium edule HOM05D006859 ORTHO05D007990 4.5e-20 102.8 149 40.9
AUR62007150 Chenopodium quinoa HOM05D006859 ORTHO05D007990 1.1e-18 98.2 216 36.6
Peaxi162Scf00190g00099 Petunia axillaris HOM05D006859 ORTHO05D007990 4.7e-17 92.8 118 44.1
CAN.G62.4 Capsicum annuum HOM05D006859 ORTHO05D007990 7.9e-17 92.0 157 37.6
Oeu040677.2 Olea europaea HOM05D006859 ORTHO05D007990 1.4e-16 91.3 158 38.0
AagrBONN_evm.TU.Sc2ySwM_228.2564 Anthoceros agrestis HOM05D006859 ORTHO05D007990 3.9e-16 89.7 290 32.4
Hma1.2p1_0840F.1_g226470 Hydrangea macrophylla HOM05D006859 ORTHO05D007990 3.9e-16 89.7 277 29.2
Ah.07g199030 Amaranthus hybridus HOM05D006859 ORTHO05D007990 3.7e-14 83.2 83 61.4
BcaC03g14076 Brassica carinata HOM05D006859 ORTHO05D007990 4.8e-14 82.8 74 66.2
Mapoly0075s0082 Marchantia polymorpha HOM05D006859 ORTHO05D007990 1.0e-11 75.1 152 44.1
DCAR_008336 Daucus carota HOM05D002294 ORTHO05D002367 2.9e-11 73.6 267 30.3
HPP92_014890 Vanilla planifolia HOM05D006859 ORTHO05D007990 3.0e-08 63.5 77 42.9
Pp3c27_6080 Physcomitrium patens HOM05D006859 ORTHO05D007990 4.4e-07 59.7 259 32.0
CBR_g52283 Chara braunii HOM05D006859 ORTHO05D007990 2.2e-06 57.4 312 29.5


User provided reference genes

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