Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 7.1e-144 513.8 246 100.0
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 4.6e-127 458.0 252 90.5
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 1.3e-126 456.4 251 92.0
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 6.7e-126 454.1 245 93.1
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 1.3e-121 439.9 243 90.1
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 1.9e-117 426.0 252 87.3
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 7.4e-117 424.1 259 83.4
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 1.8e-115 419.5 255 82.4
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 5.3e-115 417.9 259 81.5
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 1.7e-113 412.9 249 84.7
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 3.5e-111 405.2 254 80.3
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.3e-110 403.3 253 79.8
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 5.1e-110 401.4 259 79.2
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 5.1e-110 401.4 256 79.7
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 5.7e-109 397.9 260 77.3
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 2.0e-106 389.4 246 80.9
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 2.5e-104 382.5 248 79.8
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 5.7e-101 371.3 254 71.3
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 1.1e-91 340.5 247 72.5
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.8e-84 315.8 251 60.6
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 2.4e-83 312.8 260 60.8
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.3e-83 311.6 259 61.0
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 1.2e-82 310.5 263 58.9
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.2e-82 310.5 258 60.9
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.0e-82 309.7 259 60.6
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 2.0e-82 309.7 262 60.7
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.7e-82 309.3 255 60.8
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 5.9e-82 308.1 259 60.2
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.0e-81 307.4 262 58.8
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 1.3e-81 307.0 259 59.8
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 1.7e-81 306.6 254 60.2
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.7e-81 306.6 259 59.1
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 1.7e-81 306.6 257 60.7
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.7e-81 306.6 257 60.7
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 1.7e-81 306.6 255 62.0
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 2.2e-81 306.2 256 61.3
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 3.8e-81 305.4 183 76.0
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 1.1e-80 303.9 260 58.5
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 1.5e-80 303.5 249 61.0
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.9e-80 303.1 261 58.6
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.9e-80 303.1 252 60.3
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 3.2e-80 302.4 183 74.9
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 3.2e-80 302.4 257 57.6
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 4.2e-80 302.0 257 59.9
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 5.5e-80 301.6 253 61.7
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 5.5e-80 301.6 257 57.6
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 7.2e-80 301.2 258 60.9
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 7.2e-80 301.2 253 60.5
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 7.2e-80 301.2 256 58.2
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 9.4e-80 300.8 261 59.4
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.1e-79 299.7 258 59.3
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 2.7e-79 299.3 255 60.0
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.7e-79 299.3 218 65.6
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 2.7e-79 299.3 179 76.0
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 4.7e-79 298.5 260 59.2
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 6.1e-79 298.1 253 58.9
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.4e-78 297.0 255 58.8
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.4e-78 297.0 248 60.1
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.8e-78 296.6 211 67.8
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 2.3e-78 296.2 248 61.3
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 3.0e-78 295.8 260 56.5
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 3.0e-78 295.8 263 58.2
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.0e-78 295.8 259 57.1
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 3.0e-78 295.8 259 57.1
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 3.0e-78 295.8 251 60.2
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.2e-77 293.9 253 59.3
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 1.5e-77 293.5 259 58.3
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.0e-77 293.1 259 56.4
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 4.4e-77 292.0 254 56.3
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 4.4e-77 292.0 257 59.1
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 9.8e-77 290.8 257 56.0
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 1.3e-76 290.4 267 54.7
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 1.7e-76 290.0 248 59.3
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 1.7e-76 290.0 255 57.3
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 1.7e-76 290.0 251 58.2
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.2e-76 289.7 255 57.6
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 2.2e-76 289.7 255 59.2
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 2.8e-76 289.3 263 58.6
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 4.8e-76 288.5 258 56.2
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 1.8e-75 286.6 251 58.2
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 3.1e-75 285.8 261 53.6
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 7.0e-75 284.6 251 59.0
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 9.1e-75 284.3 244 58.2
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 2.0e-74 283.1 182 68.7
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 5.9e-74 281.6 262 55.7
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 1.0e-73 280.8 284 53.2
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 1.3e-73 280.4 245 56.7
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.3e-73 280.4 235 55.7
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 2.2e-73 279.6 178 70.2
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 3.8e-73 278.9 262 53.1
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 6.5e-73 278.1 181 68.0
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 6.5e-73 278.1 258 55.8
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.1e-72 277.3 252 56.0
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.1e-72 277.3 217 59.0
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 1.1e-72 277.3 182 69.2
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 2.5e-72 276.2 180 66.7
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 2.5e-72 276.2 176 72.7
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 3.2e-72 275.8 262 54.6
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 4.2e-72 275.4 217 59.0
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 5.5e-72 275.0 257 52.5
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.6e-71 273.5 204 60.3
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 1.6e-71 273.5 231 55.4
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 2.7e-71 272.7 269 54.6
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 2.7e-71 272.7 181 68.0
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 4.7e-71 271.9 191 62.8
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 1.4e-70 270.4 252 53.2
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 3.0e-70 269.2 175 68.6
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 3.0e-70 269.2 175 68.6
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 4.0e-70 268.9 191 62.3
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 5.2e-70 268.5 228 56.6
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 5.7e-69 265.0 243 54.7
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 9.8e-69 264.2 183 65.6
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.7e-68 263.5 202 61.4
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.7e-68 263.5 202 61.4
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 1.1e-67 260.8 229 54.1
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 4.1e-67 258.8 258 55.0
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.6e-66 256.9 172 68.0
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.7e-65 253.4 252 49.6
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 8.6e-65 251.1 155 74.2
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.1e-64 250.8 150 74.0
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 5.6e-64 248.4 247 54.7
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 1.6e-63 246.9 253 51.0
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 6.1e-63 245.0 215 60.9
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 8.0e-63 244.6 215 59.1
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 3.0e-62 242.7 147 74.1
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.4e-61 239.2 259 48.6
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 8.3e-60 234.6 231 54.1
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 1.4e-59 233.8 176 63.1
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 5.9e-58 228.4 220 54.5
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 1.7e-57 226.9 210 55.2
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.5e-53 213.8 185 55.7
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.4e-53 212.6 152 65.1
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 4.9e-52 208.8 155 63.2
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 8.3e-52 208.0 184 53.3
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 3.2e-51 206.1 174 56.9
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 1.6e-50 203.8 263 46.8
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 3.5e-50 202.6 167 57.5
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 2.3e-49 199.9 111 80.2
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 2.5e-48 196.4 240 42.9
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 4.3e-48 195.7 171 54.4
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 4.3e-48 195.7 144 59.7
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.4e-46 190.7 174 52.3
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.5e-45 187.2 182 51.6
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 4.1e-43 179.1 258 43.4
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 3.5e-34 149.4 143 52.4
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 6.0e-34 148.7 129 57.4
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 2.4e-30 136.7 84 72.6
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.3e-28 131.0 96 65.6
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.9e-28 129.8 142 47.9
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 4.9e-28 129.0 130 50.8
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.1e-24 117.9 213 30.5
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 1.9e-24 117.1 63 82.5
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.9e-24 117.1 71 76.1
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.5e-24 116.7 85 54.1
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 9.0e-22 108.2 141 38.3
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 3.8e-20 102.8 77 62.3
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 3.2e-19 99.8 65 66.2
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-16 90.9 67 56.7
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-13 80.9 86 44.2
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 3.8e-12 76.3 39 79.5
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.5e-11 72.4 52 57.7
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 3.5e-10 69.7 51 60.8
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.9e-08 63.9 51 52.9
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.9e-08 63.9 52 51.9


User provided reference genes

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