Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 7.7e-212 740.3 406 100.0
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 7.7e-212 740.3 406 100.0
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 6.7e-208 727.2 406 98.8
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 1.1e-205 719.9 410 96.1
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 3.5e-204 714.9 401 98.0
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 1.4e-184 649.8 412 89.3
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 1.1e-181 640.2 425 85.6
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 2.0e-180 636.0 426 85.9
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 2.3e-176 622.5 424 84.9
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.2e-175 620.2 425 84.0
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 2.6e-175 619.0 430 81.2
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 4.6e-172 608.2 424 80.0
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 3.0e-171 605.5 430 81.9
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 1.6e-169 599.7 410 85.6
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 1.6e-169 599.7 410 85.6
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 5.4e-165 584.7 420 78.6
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 5.8e-151 538.1 389 78.4
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 5.4e-149 531.6 418 71.1
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 6.9e-128 461.5 277 81.2
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 1.2e-127 460.7 277 80.5
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 5.8e-127 458.4 277 80.9
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 5.8e-127 458.4 277 80.5
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 3.8e-126 455.7 277 79.8
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 4.9e-126 455.3 280 77.9
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 1.9e-125 453.4 277 80.1
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 3.2e-125 452.6 277 79.1
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 9.3e-125 451.1 276 79.3
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 1.2e-124 450.7 294 75.9
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 1.2e-124 450.7 280 78.6
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 1.6e-124 450.3 277 79.1
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 2.1e-124 449.9 273 79.5
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 2.1e-124 449.9 277 78.0
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 2.1e-124 449.9 278 77.7
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 2.7e-124 449.5 277 78.3
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 3.5e-124 449.1 275 80.0
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 7.9e-124 448.0 342 68.4
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 1.8e-123 446.8 343 69.1
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 1.8e-123 446.8 275 78.5
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 1.8e-123 446.8 403 61.0
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 2.3e-123 446.4 276 77.9
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 3.0e-123 446.0 278 76.6
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 3.9e-123 445.7 344 67.2
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 3.9e-123 445.7 276 78.3
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 1.1e-122 444.1 273 79.1
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 1.5e-122 443.7 379 64.1
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 2.5e-122 443.0 275 77.8
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 2.5e-122 443.0 391 62.4
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 4.3e-122 442.2 278 77.0
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 4.3e-122 442.2 272 79.0
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 7.4e-122 441.4 400 62.2
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 7.4e-122 441.4 358 66.5
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 7.4e-122 441.4 276 77.9
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 7.4e-122 441.4 273 78.0
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 9.6e-122 441.0 365 65.5
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 2.8e-121 439.5 278 76.3
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 2.8e-121 439.5 276 77.5
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 3.7e-121 439.1 272 78.7
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 3.7e-121 439.1 272 78.7
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 3.7e-121 439.1 318 69.2
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 6.2e-121 438.3 273 78.0
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 8.2e-121 438.0 277 76.9
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 8.2e-121 438.0 278 75.9
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 1.1e-120 437.6 341 68.3
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 1.8e-120 436.8 386 61.9
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 2.4e-120 436.4 384 63.3
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 3.1e-120 436.0 276 76.4
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 3.1e-120 436.0 327 68.2
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 4.0e-120 435.6 272 76.5
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 6.9e-120 434.9 275 77.8
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 1.2e-119 434.1 342 66.4
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.2e-119 434.1 340 67.1
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.2e-119 434.1 342 66.4
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 2.0e-119 433.3 273 78.0
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 2.6e-119 433.0 393 60.8
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 4.5e-119 432.2 309 70.2
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 5.8e-119 431.8 277 73.3
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 1.0e-118 431.0 341 66.6
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 1.3e-118 430.6 339 66.1
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 1.7e-118 430.3 273 76.2
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 3.8e-118 429.1 277 76.2
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 6.5e-118 428.3 341 66.3
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 6.5e-118 428.3 277 72.9
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 8.4e-118 427.9 342 65.2
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 1.1e-117 427.6 369 62.9
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 1.1e-117 427.6 272 77.2
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 3.2e-117 426.0 343 65.6
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 3.2e-117 426.0 337 65.3
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 3.2e-117 426.0 276 73.9
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 5.5e-117 425.2 402 60.0
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 5.5e-117 425.2 402 60.0
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 5.5e-117 425.2 406 58.6
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 5.5e-117 425.2 276 73.9
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 7.1e-117 424.9 276 73.2
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 7.1e-117 424.9 367 62.9
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 1.2e-116 424.1 389 60.7
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 1.6e-116 423.7 272 75.7
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 2.1e-116 423.3 401 58.9
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 2.7e-116 422.9 398 60.6
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 2.7e-116 422.9 402 60.2
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 3.5e-116 422.5 398 60.1
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 3.5e-116 422.5 391 60.6
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 7.9e-116 421.4 398 60.6
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 7.9e-116 421.4 389 60.2
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 1.0e-115 421.0 353 63.7
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 1.0e-115 421.0 405 59.8
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 1.3e-115 420.6 275 75.3
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 1.3e-115 420.6 337 64.4
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 3.9e-115 419.1 260 78.8
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 6.7e-115 418.3 259 78.0
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 8.7e-115 417.9 400 59.8
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 8.7e-115 417.9 367 61.9
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 1.1e-114 417.5 276 74.6
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 1.9e-114 416.8 408 58.1
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 2.5e-114 416.4 403 60.0
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 4.3e-114 415.6 403 58.8
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 7.4e-114 414.8 335 63.6
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 4.8e-113 412.1 399 58.9
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 5.3e-112 408.7 278 73.0
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 6.7e-107 391.7 398 57.3
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 4.1e-104 382.5 276 69.2
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 5.3e-104 382.1 229 81.7
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 9.4e-101 371.3 446 51.3
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 6.7e-99 365.2 338 60.9
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 4.4e-98 362.5 271 65.7
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 2.8e-97 359.8 262 69.5
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 1.9e-93 347.1 212 77.8
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 2.5e-93 346.7 220 76.8
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 7.2e-85 318.5 198 80.8
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 4.7e-84 315.8 190 82.1
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 1.4e-83 314.3 282 55.3
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 8.3e-81 305.1 270 55.6
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 2.4e-80 303.5 233 67.8
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 9.1e-80 301.6 277 54.5
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 1.7e-73 280.8 214 67.3
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 8.3e-73 278.5 242 64.5
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.8e-72 277.3 238 64.3
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 3.8e-70 269.6 252 52.0
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 1.8e-64 250.8 199 67.3
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 7.5e-58 228.8 146 74.7
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 4.9e-57 226.1 160 71.9
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 7.0e-56 222.2 174 62.1
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 1.2e-55 221.5 174 62.6
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 1.0e-54 218.4 174 62.1
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 5.0e-54 216.1 162 70.4
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 4.3e-53 213.0 237 63.7
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 1.6e-52 211.1 130 75.4
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 9.5e-37 158.7 178 48.9
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 2.8e-36 157.1 98 72.4
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 6.2e-36 156.0 111 65.8
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 1.8e-35 154.5 157 50.3
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 8.4e-33 145.6 131 58.8
Aa31sc185G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.1e-29 135.2 174 59.8
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 1.1e-27 128.6 72 77.8
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 3.1e-27 127.1 72 76.4
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 1.5e-26 124.8 114 50.0
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 2.6e-26 124.0 75 74.7
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 4.2e-24 116.7 62 80.6
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 1.0e-22 112.1 91 61.5
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 5.6e-21 106.3 104 51.0
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 6.9e-19 99.4 69 72.5
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 3.4e-18 97.1 141 39.7
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 8.4e-17 92.4 104 50.0
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 6.0e-15 86.3 55 74.5
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 1.8e-14 84.7 55 70.9
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 2.3e-14 84.3 59 71.2
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 2.1e-12 77.8 53 67.9
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 2.1e-12 77.8 55 70.9


User provided reference genes

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