Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 1.0e-73 280.8 243 100.0
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 7.7e-66 254.6 246 94.3
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 3.8e-65 252.3 155 96.1
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 9.4e-56 221.1 243 85.6
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 1.0e-54 217.6 155 79.4
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 8.8e-54 214.5 155 85.2
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 3.0e-46 189.5 186 64.5
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 7.4e-45 184.9 184 69.0
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 7.0e-43 178.3 187 65.2
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 7.0e-43 178.3 183 66.7
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 2.6e-42 176.4 183 66.1
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 1.5e-40 170.6 185 63.2
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 2.5e-40 169.9 183 63.4
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 9.4e-40 167.9 186 64.0
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 9.4e-40 167.9 193 64.8
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 4.7e-39 165.6 182 65.4
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 2.3e-38 163.3 183 62.8
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 2.6e-37 159.8 183 62.8
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 4.2e-32 142.5 187 48.1
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.2e-29 134.4 187 47.6
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 1.6e-18 97.4 188 47.9
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 5.0e-17 92.4 190 38.9
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 4.3e-16 89.4 196 38.8
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.6e-15 87.4 165 40.6
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 2.8e-15 86.7 188 34.6
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.6e-15 86.3 183 38.8
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.6e-15 86.3 167 43.7
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 3.6e-15 86.3 188 35.6
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 4.7e-15 85.9 204 37.3
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 4.7e-15 85.9 198 37.4
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 8.0e-15 85.1 187 36.4
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.0e-14 84.7 188 35.6
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 1.0e-14 84.7 190 45.3
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 1.4e-14 84.3 188 34.6
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 2.3e-14 83.6 200 41.0
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 5.2e-14 82.4 199 34.7
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 1.2e-13 81.3 201 38.8
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 1.2e-13 81.3 222 34.2
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 1.2e-13 81.3 198 37.9
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 1.5e-13 80.9 206 34.0
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 1.5e-13 80.9 202 36.1
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 7.5e-13 78.6 175 35.4
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 7.5e-13 78.6 204 33.3
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 9.8e-13 78.2 189 36.5
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 2.2e-12 77.0 214 36.0
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 4.9e-12 75.9 189 34.4
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 6.4e-12 75.5 182 38.5
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 8.3e-12 75.1 168 38.7
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 1.4e-11 74.3 205 32.7
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 2.4e-11 73.6 194 36.6
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 2.4e-11 73.6 165 33.9
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 3.2e-11 73.2 170 36.5
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 3.2e-11 73.2 170 36.5
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 4.1e-11 72.8 203 31.5
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 5.4e-11 72.4 208 32.7
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 7.0e-11 72.0 178 34.8
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 9.2e-11 71.6 193 39.9
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.2e-10 71.2 203 31.5
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 2.7e-10 70.1 174 43.1
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 4.6e-10 69.3 206 35.4
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 7.8e-10 68.6 210 30.5
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 7.8e-10 68.6 197 33.0
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 1.3e-09 67.8 161 36.6
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 1.7e-09 67.4 194 33.5
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 1.7e-09 67.4 183 33.3
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 2.3e-09 67.0 161 34.8
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 3.0e-09 66.6 161 34.2
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 3.9e-09 66.2 160 41.9
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 3.9e-09 66.2 169 35.5
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 5.0e-09 65.9 161 33.5
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 5.0e-09 65.9 160 33.8
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 5.0e-09 65.9 161 33.5
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 5.0e-09 65.9 163 37.4
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 8.6e-09 65.1 124 37.1
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 1.1e-08 64.7 107 39.3
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 1.5e-08 64.3 165 35.2
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 1.5e-08 64.3 103 44.7
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 2.5e-08 63.5 174 32.2
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 2.5e-08 63.5 216 34.3
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 2.5e-08 63.5 124 37.1
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 2.5e-08 63.5 159 40.3
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 3.3e-08 63.2 135 43.7
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 3.3e-08 63.2 183 30.6
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 5.6e-08 62.4 171 33.3
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 5.6e-08 62.4 103 39.8
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 7.3e-08 62.0 173 30.6
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 7.3e-08 62.0 218 33.9
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 1.2e-07 61.2 164 42.7
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 1.2e-07 61.2 177 32.8
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 1.2e-07 61.2 193 33.2
Eucgr.E00268 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.2e-07 61.2 39 71.8
Eucgr.E00267 Eucalyptus grandis HOM05D006310 ORTHO05D007768 2.1e-07 60.5 39 71.8
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 3.6e-07 59.7 182 33.0
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 3.6e-07 59.7 222 30.2
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 4.7e-07 59.3 183 31.7
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 6.2e-07 58.9 40 60.0
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 1.1e-06 58.2 187 36.4
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 1.4e-06 57.8 223 30.0
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 1.4e-06 57.8 214 30.4
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 1.4e-06 57.8 40 65.0
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.8e-06 57.4 211 32.7
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 3.1e-06 56.6 40 65.0
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 4.0e-06 56.2 182 30.8
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 5.2e-06 55.8 193 34.2


User provided reference genes

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