Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27148 Brassica carinata HOM05D007940 ORTHO05D010046 1.9e-46 188.7 91 100.0
BcaC09g51575 Brassica carinata HOM05D007940 ORTHO05D010046 1.9e-46 188.7 91 100.0
BolC1t01151H Brassica oleracea HOM05D007940 ORTHO05D010046 1.9e-46 188.7 91 100.0
BcaB07g32779 Brassica carinata HOM05D007940 ORTHO05D010046 1.5e-43 179.1 91 94.5
A09p35060 Brassica napus HOM05D007940 ORTHO05D010046 9.9e-43 176.4 87 97.7
BraA09t39037Z Brassica rapa HOM05D007940 ORTHO05D010046 9.9e-43 176.4 87 97.7
Sp1g27000 Schrenkiella parvula HOM05D007940 ORTHO05D010046 3.0e-39 164.9 86 90.7
Carub.0001s2958 Capsella rubella HOM05D007940 ORTHO05D010046 1.6e-37 159.1 86 88.4
AL1G49310 Arabidopsis lyrata HOM05D007940 ORTHO05D010046 2.1e-37 158.7 86 88.4
Thhalv10009859m.g Eutrema salsugineum HOM05D007940 ORTHO05D010046 2.1e-37 158.7 86 88.4
AT1G31175 Arabidopsis thaliana HOM05D007940 ORTHO05D010046 1.4e-36 156.0 86 87.2
Aa31LG2G15120 Aethionema arabicum HOM05D007940 ORTHO05D010046 1.3e-34 149.4 85 83.5
CARHR030670 Cardamine hirsuta HOM05D007940 ORTHO05D010046 1.3e-34 149.4 86 83.7
THA.LOC104798551 Tarenaya hassleriana HOM05D007940 ORTHO05D010046 4.0e-28 127.9 85 70.6
ClCG01G009440 Citrullus lanatus HOM05D007940 ORTHO05D010046 5.8e-27 124.0 79 70.9
FAN16G1222 Fragaria x ananassa HOM05D007940 ORTHO05D010046 7.6e-27 123.6 80 70.0
Prupe.4G111600 Prunus persica HOM05D007940 ORTHO05D010046 7.6e-27 123.6 81 69.1
Sed0008509 Sechium edule HOM05D007940 ORTHO05D010046 1.3e-26 122.9 79 68.4
RcHm_v2.0_Chr5g0020061 Rosa chinensis HOM05D007940 ORTHO05D010046 2.2e-26 122.1 79 69.6
MELO3C021755.2 Cucumis melo HOM05D007940 ORTHO05D010046 2.9e-26 121.7 79 68.4
Migut.M01978 Erythranthe guttata HOM05D007940 ORTHO05D010046 1.1e-25 119.8 81 65.4
TWI38G0312 Tripterygium wilfordii HOM05D007940 ORTHO05D010046 1.4e-25 119.4 88 62.5
MD05G1252500 Malus domestica HOM05D007940 ORTHO05D010046 1.9e-25 119.0 79 67.1
Sabra15G0137900 Salix brachista HOM05D007940 ORTHO05D010046 1.9e-25 119.0 81 64.2
Eucgr.D01043 Eucalyptus grandis HOM05D007940 ORTHO05D010046 4.2e-25 117.9 81 64.2
MD10G1233500 Malus domestica HOM05D007940 ORTHO05D010046 4.2e-25 117.9 79 65.8
QL11p017779 Quercus lobata HOM05D007940 ORTHO05D010046 7.1e-25 117.1 80 65.0
SGA_v2.0_scaffold298G47684 Striga asiatica HOM05D007940 ORTHO05D010046 7.1e-25 117.1 81 63.0
CSS0023427 Camellia sinensis var. sinensis HOM05D007940 ORTHO05D010046 1.2e-24 116.3 73 71.2
Potri.015G121500 Populus trichocarpa HOM05D007940 ORTHO05D010046 1.2e-24 116.3 81 63.0
Ah.06g193510 Amaranthus hybridus HOM05D007940 ORTHO05D010046 2.7e-24 115.2 81 61.7
Lalb_Chr07g0188831 Lupinus albus HOM05D007940 ORTHO05D010046 2.7e-24 115.2 81 64.2
Atru.chr10.309 Acer truncatum HOM05D007940 ORTHO05D010046 3.5e-24 114.8 78 64.1
Hma1.2p1_0040F.1_g025155 Hydrangea macrophylla HOM05D007940 ORTHO05D010046 3.5e-24 114.8 83 62.7
Manes.16G056500 Manihot esculenta HOM05D007940 ORTHO05D010046 3.5e-24 114.8 81 63.0
Phvul.009G252500 Phaseolus vulgaris HOM05D007940 ORTHO05D010046 4.6e-24 114.4 81 60.5
Manes.16G057400 Manihot esculenta HOM05D007940 ORTHO05D010046 6.0e-24 114.0 81 63.0
Sc16g0011710 Simmondsia chinensis HOM05D007940 ORTHO05D010046 6.0e-24 114.0 86 59.3
Cc09_g06150 Coffea canephora HOM05D007940 ORTHO05D010046 1.0e-23 113.2 79 64.6
Thecc.06G142100 Theobroma cacao HOM05D007940 ORTHO05D010046 1.0e-23 113.2 83 60.2
TPR.G22024 Trifolium pratense HOM05D007940 ORTHO05D010046 1.0e-23 113.2 78 65.4
Psat1g156840 Pisum sativum HOM05D007940 ORTHO05D010046 1.3e-23 112.8 78 65.4
SalBow6G6284 Salvia bowleyana HOM05D007940 ORTHO05D010046 1.3e-23 112.8 81 60.5
SalBow8G3130 Salvia bowleyana HOM05D007940 ORTHO05D010046 1.3e-23 112.8 81 60.5
FAN21G0368 Fragaria x ananassa HOM05D007940 ORTHO05D010046 1.8e-23 112.5 80 66.2
Medtr2g435250 Medicago truncatula HOM05D007940 ORTHO05D010046 3.0e-23 111.7 78 64.1
Duzib235G0199 Durio zibethinus HOM05D007940 ORTHO05D010046 3.9e-23 111.3 84 59.5
Nn7g38154 Nelumbo nucifera HOM05D007940 ORTHO05D010046 5.1e-23 110.9 81 60.5
Cfa019394 Carpinus fangiana HOM05D007940 ORTHO05D010046 1.1e-22 109.8 89 56.2
Oeu008726.1 Olea europaea HOM05D007940 ORTHO05D010046 1.1e-22 109.8 79 60.8
Ca_01891_v3 Cicer arietinum L. HOM05D007940 ORTHO05D010046 1.9e-22 109.0 78 61.5
Aqoxy3G00719 Aquilegia oxysepala HOM05D007940 ORTHO05D010046 2.5e-22 108.6 81 58.0
DCAR_003782 Daucus carota HOM05D007940 ORTHO05D010046 3.3e-22 108.2 81 58.0
CANSAT35G1488 Cannabis sativa HOM05D007940 ORTHO05D010046 9.7e-22 106.7 79 62.0
Lsat_1_v5_gn_5_23140 Lactuca sativa HOM05D007940 ORTHO05D010046 9.7e-22 106.7 79 57.0
Solyc11g020710.2 Solanum lycopersicum HOM05D007940 ORTHO05D010046 1.3e-21 106.3 79 60.8
Sopen11g010730 Solanum pennellii HOM05D007940 ORTHO05D010046 1.3e-21 106.3 79 60.8
Glyma.15G146300 Glycine max HOM05D007940 ORTHO05D010046 1.6e-21 105.9 82 58.5
EL10Ac4g10315 Beta vulgaris HOM05D007940 ORTHO05D010046 6.3e-21 104.0 76 60.5
Actinidia33707 Actinidia chinensis HOM05D007940 ORTHO05D010046 8.2e-21 103.6 79 57.0
HanXRQChr04g0109371 Helianthus annuus HOM05D007940 ORTHO05D010046 1.1e-20 103.2 81 51.9
HPP92_017565 Vanilla planifolia HOM05D007940 ORTHO05D010046 2.9e-18 95.1 79 57.0
Os07g0567500 Oryza sativa ssp. japonica HOM05D007940 ORTHO05D010046 7.2e-17 90.5 80 55.0
Zm00001eb107160 Zea mays HOM05D007940 ORTHO05D010046 7.2e-17 90.5 80 53.8
Ciclev10017318m.g Citrus clementina HOM05D007940 ORTHO05D010046 2.7e-16 88.6 79 53.2
COL.COLO4_30989 Corchorus olitorius HOM05D007940 ORTHO05D010046 3.6e-16 88.2 85 45.9
Gohir.D05G147600 Gossypium hirsutum HOM05D007940 ORTHO05D010046 3.6e-16 88.2 84 48.8
Gorai.009G151700 Gossypium raimondii HOM05D007940 ORTHO05D010046 5.1e-15 84.3 84 47.6
MBI02_g13338_MAGBIO Magnolia biondii HOM05D007940 ORTHO05D010046 8.8e-15 83.6 71 53.5
Gohir.D05G147732 Gossypium hirsutum HOM05D007940 ORTHO05D010046 1.1e-14 83.2 84 46.4
CsaV3_1G046330 Cucumis sativus L. HOM05D007940 ORTHO05D010046 8.2e-13 77.0 48 66.7
PSO675G1966 Papaver somniferum HOM05D007940 ORTHO05D010046 1.1e-12 76.6 73 47.9
TAR624G1282 Trochodendron aralioides HOM05D007940 ORTHO05D010046 3.8e-10 68.2 52 53.8
Mapoly0019s0110 Marchantia polymorpha HOM05D007940 ORTHO05D010046 1.2e-08 63.2 74 40.5
CBR_g28534 Chara braunii HOM05D007940 ORTHO05D010046 2.7e-08 62.0 87 36.8
SMO347G0336 Selaginella moellendorffii HOM05D007940 ORTHO05D010046 1.4e-07 59.7 79 38.0
FAN20G1268 Fragaria x ananassa HOM05D007940 ORTHO05D010046 4.4e-06 54.7 35 65.7
FAN27G1447 Fragaria x ananassa HOM05D008022 ORTHO05D010147 5.7e-06 54.3 65 46.2
FAN03G3294 Fragaria x ananassa HOM05D004346 ORTHO05D005153 7.4e-06 53.9 35 65.7
FAN12G0891 Fragaria x ananassa HOM05D007940 ORTHO05D010046 7.4e-06 53.9 65 46.2
FAN24G2461 Fragaria x ananassa HOM05D000188 ORTHO05D000362 7.4e-06 53.9 36 61.1


User provided reference genes

Program Settings