Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 8.0e-129 463.8 234 100.0
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 8.0e-129 463.8 234 100.0
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 8.3e-126 453.8 234 97.9
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 7.5e-119 430.6 235 93.2
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 6.2e-113 411.0 235 88.9
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 4.4e-111 404.8 234 85.9
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 1.2e-108 396.7 233 84.1
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 1.2e-108 396.7 233 83.3
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 4.6e-108 394.8 211 93.4
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 6.0e-108 394.4 234 83.3
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 2.5e-106 389.0 234 82.9
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 1.2e-105 386.7 234 82.9
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 4.7e-105 384.8 234 82.5
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 1.4e-104 383.3 234 82.1
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 6.8e-104 380.9 234 80.8
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 1.2e-103 380.2 234 80.3
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 2.6e-103 379.0 234 80.8
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 7.1e-101 370.9 234 79.5
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 9.2e-101 370.5 226 83.2
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 7.8e-100 367.5 224 83.9
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.1e-96 357.1 234 78.2
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 1.2e-87 327.0 234 68.8
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.5e-87 326.6 235 71.5
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 2.0e-87 326.2 214 72.4
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.0e-87 326.2 235 71.5
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 1.7e-86 323.2 221 71.0
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 2.9e-86 322.4 234 70.9
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 6.4e-86 321.2 236 67.8
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 6.4e-86 321.2 235 71.1
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 8.4e-86 320.9 219 72.1
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 4.6e-84 315.1 229 72.5
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 7.8e-84 314.3 235 68.9
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.0e-83 313.9 235 68.5
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 1.3e-83 313.5 229 71.2
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 1.7e-83 313.2 258 63.6
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.7e-83 313.2 219 71.7
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 3.0e-83 312.4 216 70.4
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.0e-83 312.4 228 69.7
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 5.1e-83 311.6 236 67.8
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 5.1e-83 311.6 236 67.4
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 6.6e-83 311.2 224 70.1
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 1.1e-82 310.5 235 67.7
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.5e-82 310.1 234 65.8
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 3.3e-82 308.9 234 65.4
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 2.1e-81 306.2 224 70.1
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 6.2e-81 304.7 214 71.5
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 8.1e-81 304.3 224 66.1
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 1.1e-80 303.9 230 68.3
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 1.4e-80 303.5 234 65.4
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.4e-80 303.5 230 67.8
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 1.4e-80 303.5 235 66.4
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.8e-80 303.1 224 67.9
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 1.8e-80 303.1 224 67.9
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.8e-80 303.1 239 64.9
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 2.4e-80 302.8 224 67.4
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 2.4e-80 302.8 235 66.0
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 2.4e-80 302.8 227 67.4
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 2.4e-80 302.8 225 68.0
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.1e-80 302.4 224 67.4
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 5.3e-80 301.6 210 70.0
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 9.0e-80 300.8 219 68.0
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 2.0e-79 299.7 220 67.7
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 2.6e-79 299.3 235 65.5
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 2.6e-79 299.3 230 67.8
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 4.5e-79 298.5 235 65.5
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 4.5e-79 298.5 230 67.4
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 7.6e-79 297.7 213 69.0
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 9.9e-79 297.4 216 68.1
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 1.3e-78 297.0 236 64.0
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 1.7e-78 296.6 235 64.7
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 1.7e-78 296.6 224 67.0
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 2.9e-78 295.8 222 67.1
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 4.9e-78 295.0 223 67.7
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 6.4e-78 294.7 217 68.7
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 8.4e-78 294.3 292 56.5
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 8.4e-78 294.3 230 67.0
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 3.2e-77 292.4 213 69.5
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 4.2e-77 292.0 236 63.6
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 5.4e-77 291.6 215 68.4
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 7.1e-77 291.2 220 66.4
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 9.3e-77 290.8 235 64.7
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 1.2e-76 290.4 207 69.6
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.2e-76 290.4 204 72.5
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.2e-76 290.4 204 72.5
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.2e-76 290.4 212 67.5
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 2.1e-76 289.7 222 65.8
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 3.5e-76 288.9 239 63.6
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 4.6e-76 288.5 235 63.8
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 6.0e-76 288.1 235 63.4
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 7.9e-76 287.7 219 63.0
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 7.9e-76 287.7 251 61.8
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 1.3e-75 287.0 223 65.9
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 1.3e-75 287.0 214 64.5
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 1.3e-75 287.0 231 60.6
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 5.1e-75 285.0 218 65.6
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 5.1e-75 285.0 231 60.6
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 1.1e-74 283.9 217 66.4
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 2.5e-74 282.7 256 59.4
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 3.3e-74 282.3 234 62.8
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 4.3e-74 282.0 231 61.5
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 9.6e-74 280.8 211 67.8
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 1.6e-73 280.0 208 65.4
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 2.8e-73 279.3 223 63.2
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 3.6e-73 278.9 211 68.2
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.4e-72 276.9 215 65.1
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 1.4e-72 276.9 231 60.2
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 2.0e-71 273.1 217 64.1
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 2.0e-71 273.1 221 60.2
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 2.6e-71 272.7 235 61.7
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 5.8e-71 271.6 222 64.4
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 5.8e-71 271.6 234 59.8
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 9.9e-71 270.8 211 63.0
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 1.4e-69 266.9 237 58.2
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 3.2e-69 265.8 255 55.3
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 6.7e-67 258.1 168 75.6
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 1.5e-66 256.9 199 63.8
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 3.3e-66 255.8 235 58.7
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 4.3e-66 255.4 235 58.7
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 9.6e-66 254.2 320 45.3
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 1.8e-64 250.0 235 59.6
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 5.3e-64 248.4 212 59.4
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.2e-63 247.3 162 74.7
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 1.5e-63 246.9 170 71.8
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 3.5e-60 235.7 218 55.0
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 3.0e-59 232.6 214 56.5
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.1e-58 230.7 226 57.1
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 1.5e-58 230.3 224 56.2
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 1.5e-55 220.3 223 54.7
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 4.5e-55 218.8 214 55.6
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 4.5e-55 218.8 174 58.6
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 1.7e-54 216.9 214 52.3
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 5.0e-54 215.3 171 62.6
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.4e-53 213.8 119 82.4
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 4.2e-53 212.2 219 53.4
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 1.0e-51 207.6 264 45.1
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 3.9e-51 205.7 122 79.5
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 3.7e-49 199.1 169 63.9
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 6.3e-49 198.4 116 77.6
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 1.4e-48 197.2 104 90.4
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 3.1e-48 196.1 145 68.3
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 2.2e-46 189.9 167 57.5
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 4.2e-45 185.7 154 62.3
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.7e-44 183.0 119 71.4
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 1.8e-43 180.3 218 48.6
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 3.4e-39 166.0 224 42.4
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 1.7e-38 163.7 186 47.8
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 5.5e-37 158.7 302 36.4
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.6e-34 149.8 177 49.7
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 2.6e-34 149.8 139 56.1
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 7.4e-34 148.3 188 48.4
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 4.2e-29 132.5 80 77.5
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.4e-24 117.5 123 56.1
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 1.3e-22 110.9 74 73.0
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 2.2e-22 110.2 87 63.2
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 6.5e-22 108.6 81 67.9
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 9.4e-21 104.8 65 75.4
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 1.6e-20 104.0 166 40.4
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 2.7e-20 103.2 114 50.9
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 3.6e-20 102.8 107 53.3
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 6.1e-20 102.1 135 47.4
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 6.1e-20 102.1 59 81.4
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 1.4e-19 100.9 67 73.1
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 3.0e-19 99.8 109 53.2
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 4.4e-18 95.9 254 32.3
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 1.3e-17 94.4 170 38.2
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 2.0e-15 87.0 161 37.9
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.0e-15 87.0 95 48.4
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 2.9e-14 83.2 96 51.0
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 1.4e-11 74.3 74 54.1
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 5.2e-11 72.4 154 35.7
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 1.1e-08 64.7 46 65.2
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 1.1e-08 64.7 52 65.4
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 4.5e-07 59.3 45 60.0


User provided reference genes

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