Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 0.0e+00 1095.1 561 100.0
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 2.8e-273 944.9 566 87.1
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 1.9e-269 932.2 566 87.8
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 3.7e-265 917.9 562 86.5
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 3.1e-264 914.8 562 86.1
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 3.8e-262 907.9 562 85.8
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 9.2e-256 886.7 582 80.4
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.6e-255 885.9 583 81.0
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 5.9e-255 884.0 566 84.3
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 5.0e-254 880.9 583 80.1
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 5.0e-254 880.9 583 80.1
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.5e-253 879.4 581 79.9
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 2.5e-253 878.6 583 79.9
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 3.3e-253 878.2 583 81.0
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 5.6e-253 877.5 581 80.0
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 1.6e-252 875.9 581 79.3
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 7.5e-250 867.1 581 79.0
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.6e-247 859.4 578 78.9
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 4.6e-247 857.8 582 78.5
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 3.9e-246 854.7 582 77.1
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 3.7e-241 838.2 578 77.3
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.2e-239 833.2 565 77.7
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 2.6e-234 815.5 577 76.1
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 1.4e-227 793.1 543 77.9
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 9.9e-226 786.9 585 70.9
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 6.2e-204 714.5 414 89.1
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 2.7e-199 699.1 563 65.7
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.3e-198 696.8 566 64.8
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 7.4e-197 691.0 565 64.1
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 2.8e-196 689.1 563 63.9
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.4e-195 686.8 564 63.1
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 2.4e-195 686.0 564 64.2
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 9.0e-195 684.1 569 63.3
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 1.0e-193 680.6 565 63.0
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 1.7e-193 679.9 565 63.4
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 8.4e-193 677.6 564 62.8
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 2.5e-192 676.0 576 61.6
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 3.2e-192 675.6 577 61.0
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 3.6e-191 672.2 568 63.4
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 6.7e-190 667.9 568 62.5
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 2.8e-188 662.5 561 61.7
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.4e-187 660.2 396 85.1
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.1e-187 659.1 574 61.5
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 5.3e-187 658.3 560 60.7
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.4e-186 655.6 573 61.3
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 4.5e-186 655.2 571 61.3
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 5.9e-186 654.8 557 62.3
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 1.3e-185 653.7 569 61.7
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 8.5e-185 651.0 564 61.9
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 2.5e-184 649.4 563 61.6
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.5e-184 649.4 565 61.9
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 4.2e-184 648.7 564 60.5
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 5.5e-184 648.3 560 62.0
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 7.2e-184 647.9 559 60.6
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 1.2e-183 647.1 564 60.5
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 1.2e-183 647.1 578 60.0
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 3.6e-183 645.6 568 60.2
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 6.1e-183 644.8 561 62.0
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 2.3e-182 642.9 569 62.0
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 5.1e-182 641.7 555 60.9
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.7e-182 641.3 566 60.2
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.7e-182 641.3 566 60.1
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 2.6e-181 639.4 567 60.5
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 7.4e-181 637.9 568 60.7
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.7e-180 635.6 570 60.0
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 3.7e-180 635.6 573 60.0
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.1e-179 634.0 506 63.8
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 3.1e-179 632.5 572 58.7
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.2e-178 630.6 573 60.0
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.2e-178 630.6 562 59.8
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.2e-178 630.6 562 59.8
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 2.6e-178 629.4 562 59.6
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 7.7e-178 627.9 574 59.2
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.3e-177 627.1 568 59.3
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 5.0e-177 625.2 586 57.0
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.2e-176 622.5 508 62.8
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 2.1e-175 619.8 568 60.6
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 6.1e-175 618.2 572 58.7
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.0e-174 617.5 573 58.8
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 3.9e-174 615.5 563 57.4
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 1.1e-173 614.0 573 58.3
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 1.1e-173 614.0 568 58.1
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 1.5e-173 613.6 561 58.1
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 1.8e-171 606.7 563 59.3
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 1.6e-170 603.6 563 59.5
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 1.6e-170 603.6 561 56.7
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.0e-169 600.9 444 68.2
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 2.9e-169 599.4 566 57.6
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 8.5e-169 597.8 456 71.9
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 1.5e-168 597.0 562 58.7
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 1.5e-168 597.0 575 56.0
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 9.4e-168 594.3 564 58.2
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.2e-167 594.0 526 59.5
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 4.7e-167 592.0 565 58.1
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 8.0e-167 591.3 565 57.0
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 1.0e-166 590.9 563 58.8
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 2.6e-165 586.3 564 55.7
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.4e-165 585.5 457 63.9
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 7.5e-165 584.7 573 55.7
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 1.7e-164 583.6 554 56.1
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.2e-164 583.2 589 54.3
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 6.3e-164 581.6 570 57.4
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 1.4e-163 580.5 559 56.9
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 1.2e-162 577.4 570 57.2
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.0e-158 562.8 425 66.1
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 3.4e-157 559.3 562 55.3
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 1.3e-156 557.4 448 63.4
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 2.2e-156 556.6 570 54.9
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 4.1e-155 552.4 453 60.7
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 7.7e-154 548.1 591 52.1
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 2.2e-153 546.6 573 52.4
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 8.0e-151 538.1 565 54.2
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 4.1e-147 525.8 572 53.5
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 6.6e-145 518.5 577 51.6
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 1.2e-143 514.2 594 49.3
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 4.0e-142 509.2 567 52.0
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.9e-140 503.1 562 50.5
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 1.8e-139 500.4 574 52.1
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 2.4e-139 500.0 564 50.2
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 5.4e-139 498.8 351 69.2
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 3.7e-132 476.1 567 48.9
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 2.7e-130 469.9 558 50.9
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 2.5e-128 463.4 464 51.7
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.1e-126 458.0 542 50.2
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.9e-120 437.2 314 66.6
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 2.8e-119 433.3 479 46.6
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 6.7e-97 359.0 413 45.8
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 1.5e-96 357.8 395 52.2
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.0e-89 335.1 311 61.1
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.5e-85 321.2 403 47.4
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 2.3e-81 307.4 501 40.7
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.4e-78 298.1 260 61.5
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 3.9e-73 280.0 211 64.0
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.1e-70 270.4 371 43.9
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 5.1e-65 253.1 223 55.2
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 1.3e-52 211.8 269 52.0
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.9e-52 210.7 168 61.3
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 1.0e-49 202.2 203 50.2
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 2.5e-43 181.0 177 58.2
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 2.7e-42 177.6 205 54.1
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 5.0e-36 156.8 289 39.1
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 2.3e-28 131.3 520 26.2
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 8.6e-28 129.4 92 65.2
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.1e-27 129.0 93 64.5
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.2e-18 99.0 152 44.7
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.1e-17 95.9 79 58.2
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 1.2e-16 92.4 91 50.5
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 1.3e-15 89.0 71 59.2
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 1.3e-15 89.0 51 82.4
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 1.7e-15 88.6 70 60.0
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 2.9e-15 87.8 71 57.7
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.2e-13 82.4 193 26.4
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.5e-13 80.9 88 50.0
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.3e-12 79.0 116 44.8
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 5.0e-12 77.0 74 52.7
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.9e-06 58.5 50 56.0


User provided reference genes

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