Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51464 Brassica carinata HOM05D000828 ORTHO05D000623 1.6e-71 272.7 142 100.0
C01p12650 Brassica napus HOM05D000828 ORTHO05D000623 1.3e-54 216.5 164 76.8
A01p10700 Brassica napus HOM05D000828 ORTHO05D000623 3.7e-44 181.8 144 72.9
BraA01t01016Z Brassica rapa HOM05D000828 ORTHO05D000623 3.7e-44 181.8 144 72.9
BolC1t01242H Brassica oleracea HOM05D000828 ORTHO05D000623 4.8e-44 181.4 127 82.7
BcaNung05500 Brassica carinata HOM05D000828 ORTHO05D000623 9.1e-35 150.6 142 62.7
Sp7g17400 Schrenkiella parvula HOM05D000828 ORTHO05D000623 1.4e-30 136.7 139 58.3
Thhalv10027005m.g Eutrema salsugineum HOM05D000828 ORTHO05D000623 1.7e-28 129.8 173 51.4
Carub.0007s2256 Capsella rubella HOM05D000828 ORTHO05D000623 4.8e-28 128.3 87 75.9
CARHR225520 Cardamine hirsuta HOM05D000828 ORTHO05D000623 6.3e-28 127.9 138 56.5
AT4G18660 Arabidopsis thaliana HOM05D000828 ORTHO05D000623 1.1e-27 127.1 137 56.2
Aa31LG9G7230 Aethionema arabicum HOM05D000828 ORTHO05D000623 6.3e-20 101.3 87 59.8
Thhalv10001138m.g Eutrema salsugineum HOM05D000828 ORTHO05D000623 7.0e-19 97.8 89 55.1
AT5G45830 Arabidopsis thaliana HOM05D000828 ORTHO05D000623 1.2e-18 97.1 93 53.8
CARHR176140 Cardamine hirsuta HOM05D000828 ORTHO05D000623 1.2e-18 97.1 87 57.5
C03p81420 Brassica napus HOM05D000828 ORTHO05D000623 4.5e-18 95.1 97 57.7
BcaC01g00557 Brassica carinata HOM05D000828 ORTHO05D000623 5.9e-18 94.7 89 59.6
BolC3t20410H Brassica oleracea HOM05D000828 ORTHO05D000623 5.9e-18 94.7 89 59.6
BcaB07g30867 Brassica carinata HOM05D000828 ORTHO05D000623 1.0e-17 94.0 87 55.2
BcaC06g31511 Brassica carinata HOM05D000828 ORTHO05D000623 1.3e-17 93.6 89 53.9
BcaC06g34393 Brassica carinata HOM05D000828 ORTHO05D000623 2.9e-17 92.4 85 55.3
A08p13940 Brassica napus HOM05D000828 ORTHO05D000623 2.9e-17 92.4 89 58.4
C07p29120 Brassica napus HOM05D000828 ORTHO05D000623 2.9e-17 92.4 85 55.3
BolC7t43454H Brassica oleracea HOM05D000828 ORTHO05D000623 2.9e-17 92.4 85 55.3
BraA06t27494Z Brassica rapa HOM05D000828 ORTHO05D000623 2.9e-17 92.4 85 55.3
BraA08t33382Z Brassica rapa HOM05D000828 ORTHO05D000623 2.9e-17 92.4 89 58.4
A09p21950 Brassica napus HOM05D000828 ORTHO05D000623 5.0e-17 91.7 85 55.3
BolC9t55681H Brassica oleracea HOM05D000828 ORTHO05D000623 5.0e-17 91.7 96 52.1
BraA09t37802Z Brassica rapa HOM05D000828 ORTHO05D000623 5.0e-17 91.7 85 55.3
Carub.0008s0213 Capsella rubella HOM05D000828 ORTHO05D000623 6.5e-17 91.3 93 51.6
Sp2g10750 Schrenkiella parvula HOM05D000828 ORTHO05D000623 6.5e-17 91.3 85 56.5
A06p46330 Brassica napus HOM05D000828 ORTHO05D000623 8.6e-17 90.9 85 54.1
AL8G12750 Arabidopsis lyrata HOM05D000828 ORTHO05D000623 1.1e-16 90.5 93 50.5
BcaC04g21743 Brassica carinata HOM05D000828 ORTHO05D000623 1.5e-16 90.1 85 54.1
C09p28110 Brassica napus HOM05D000828 ORTHO05D000623 1.5e-16 90.1 85 54.1
CARHR225540 Cardamine hirsuta HOM05D000828 ORTHO05D000623 1.5e-16 90.1 82 59.8
BcaNung02667 Brassica carinata HOM05D000828 ORTHO05D000623 1.9e-16 89.7 83 59.0
C07p49910 Brassica napus HOM05D000828 ORTHO05D000623 1.9e-16 89.7 83 59.0
BolC7t45493H Brassica oleracea HOM05D000828 ORTHO05D000623 1.9e-16 89.7 83 59.0
AT4G18690 Arabidopsis thaliana HOM05D000828 ORTHO05D000623 2.5e-16 89.4 84 58.3
AL7G35560 Arabidopsis lyrata HOM05D000828 ORTHO05D000623 4.2e-16 88.6 90 53.3
A03p51470 Brassica napus HOM05D000828 ORTHO05D000623 4.2e-16 88.6 83 59.0
A03p51480 Brassica napus HOM05D000828 ORTHO05D000623 4.2e-16 88.6 83 59.0
BraA03t14231Z Brassica rapa HOM05D000828 ORTHO05D000623 4.2e-16 88.6 83 59.0
Thhalv10025925m.g Eutrema salsugineum HOM05D000828 ORTHO05D000623 5.5e-16 88.2 92 55.4
Carub.0007s2254 Capsella rubella HOM05D000828 ORTHO05D000623 2.8e-15 85.9 84 56.0
Thhalv10027258m.g Eutrema salsugineum HOM05D000828 ORTHO05D000623 6.1e-15 84.7 93 52.7
Aa31LG6G1420 Aethionema arabicum HOM05D000828 ORTHO05D000623 1.0e-14 84.0 84 50.0
AL7G35570 Arabidopsis lyrata HOM05D000828 ORTHO05D000623 1.4e-14 83.6 84 58.3
CARHR225550 Cardamine hirsuta HOM05D000828 ORTHO05D000623 1.4e-14 83.6 82 58.5
Thecc.06G168700 Theobroma cacao HOM05D000828 ORTHO05D000623 1.2e-13 80.5 82 53.7
Gohir.A03G169100 Gossypium hirsutum HOM05D000828 ORTHO05D000623 2.6e-13 79.3 83 50.6
AT4G18680 Arabidopsis thaliana HOM05D000828 ORTHO05D000623 5.7e-13 78.2 84 53.6
Gorai.005G215100 Gossypium raimondii HOM05D000828 ORTHO05D000623 7.5e-13 77.8 83 49.4
Gohir.D02G192300 Gossypium hirsutum HOM05D000828 ORTHO05D000623 1.3e-12 77.0 83 48.2
THA.LOC104798429 Tarenaya hassleriana HOM05D000828 ORTHO05D000623 3.7e-12 75.5 98 43.9
Gohir.D05G157250 Gossypium hirsutum HOM05D000828 ORTHO05D000623 6.3e-12 74.7 83 49.4
Gorai.009G161700 Gossypium raimondii HOM05D000828 ORTHO05D000623 6.3e-12 74.7 83 49.4
CiPaw.10G060200 Carya illinoinensis HOM05D000828 ORTHO05D000623 1.1e-11 73.9 83 50.6
COL.COLO4_31273 Corchorus olitorius HOM05D000828 ORTHO05D000623 3.1e-11 72.4 83 44.6
Actinidia16788 Actinidia chinensis HOM05D000828 ORTHO05D000623 1.6e-10 70.1 82 47.6
Prupe.4G062800 Prunus persica HOM05D000828 ORTHO05D000623 1.6e-10 70.1 79 50.6
Migut.M00704 Erythranthe guttata HOM05D000828 ORTHO05D000623 5.9e-10 68.2 83 42.2
Peaxi162Scf00854g00031 Petunia axillaris HOM05D000828 ORTHO05D000623 5.9e-10 68.2 84 44.0
Eucgr.F03275 Eucalyptus grandis HOM05D000828 ORTHO05D000623 7.8e-10 67.8 83 43.4
TAR624G0843 Trochodendron aralioides HOM05D000828 ORTHO05D000623 1.0e-09 67.4 84 40.5
FvH4_3g07640 Fragaria vesca HOM05D000828 ORTHO05D000623 1.3e-09 67.0 85 47.1
FAN25G3729 Fragaria x ananassa HOM05D000828 ORTHO05D000623 1.3e-09 67.0 85 47.1
Nitab4.5_0013297g0010 Nicotiana tabacum HOM05D000828 ORTHO05D000623 2.3e-09 66.2 82 45.1
Actinidia18801 Actinidia chinensis HOM05D000828 ORTHO05D000623 2.9e-09 65.9 83 42.2
COL.COLO4_31275 Corchorus olitorius HOM05D000828 ORTHO05D000623 5.0e-09 65.1 83 41.0
Migut.M00720 Erythranthe guttata HOM05D000828 ORTHO05D000623 5.0e-09 65.1 83 42.2
RcHm_v2.0_Chr5g0011041 Rosa chinensis HOM05D000828 ORTHO05D000623 6.6e-09 64.7 85 47.1
FAN11G2205 Fragaria x ananassa HOM05D000828 ORTHO05D000623 8.6e-09 64.3 85 45.9
Peaxi162Scf01009g00022 Petunia axillaris HOM05D000828 ORTHO05D000623 2.5e-08 62.8 89 39.3
Cc02_g15150 Coffea canephora HOM05D000828 ORTHO05D000623 3.3e-08 62.4 80 41.2
Manes.17G057000 Manihot esculenta HOM05D000828 ORTHO05D000623 4.3e-08 62.0 84 44.0
CiPaw.09G070800 Carya illinoinensis HOM05D000828 ORTHO05D000623 5.6e-08 61.6 94 38.3
Cpa.g.c34917 Carica papaya HOM05D000828 ORTHO05D000623 7.3e-08 61.2 84 40.5
Nitab4.5_0000605g0010 Nicotiana tabacum HOM05D000828 ORTHO05D000623 7.3e-08 61.2 82 42.7
PGR031G0760 Punica granatum HOM05D000828 ORTHO05D000623 7.3e-08 61.2 89 40.4
MBI07_g09557_MAGBIO Magnolia biondii HOM05D000828 ORTHO05D000623 9.5e-08 60.8 84 40.5
HanXRQChr04g0106831 Helianthus annuus HOM05D000828 ORTHO05D000623 1.2e-07 60.5 85 37.6
SalBow7G4758 Salvia bowleyana HOM05D000828 ORTHO05D000623 1.6e-07 60.1 83 44.6
Dinv18367 Davidia involucrata HOM05D000828 ORTHO05D000623 2.1e-07 59.7 83 41.0
Nn1g04457 Nelumbo nucifera HOM05D000828 ORTHO05D000623 2.1e-07 59.7 83 41.0
QL05p047773 Quercus lobata HOM05D000828 ORTHO05D000623 2.8e-07 59.3 70 45.7
QL10p017450 Quercus lobata HOM05D000828 ORTHO05D000623 2.8e-07 59.3 70 45.7
CsaV3_6G050950 Cucumis sativus L. HOM05D000828 ORTHO05D000623 3.6e-07 58.9 85 36.5
HanXRQChr15g0476191 Helianthus annuus HOM05D000828 ORTHO05D000623 3.6e-07 58.9 96 37.5
MELO3C007209.2 Cucumis melo HOM05D000828 ORTHO05D000623 6.1e-07 58.2 95 40.0
Peaxi162Scf00768g00513 Petunia axillaris HOM05D000828 ORTHO05D000623 6.1e-07 58.2 91 40.7
CDE04G2092 Ceratophyllum demersum HOM05D000828 ORTHO05D000623 1.0e-06 57.4 83 42.2
PGSC0003DMG400028441 Solanum tuberosum HOM05D000828 ORTHO05D000623 1.4e-06 57.0 82 37.8
ClCG01G023790 Citrullus lanatus HOM05D000828 ORTHO05D000623 1.8e-06 56.6 85 35.3
Nitab4.5_0014144g0010 Nicotiana tabacum HOM05D000828 ORTHO05D000623 1.8e-06 56.6 84 39.3
HanXRQChr04g0106771 Helianthus annuus HOM05D000828 ORTHO05D000623 2.3e-06 56.2 92 38.0
Solyc02g072570.2 Solanum lycopersicum HOM05D000828 ORTHO05D000623 2.3e-06 56.2 85 40.0
Solyc02g073570.1 Solanum lycopersicum HOM05D000828 ORTHO05D000623 2.3e-06 56.2 82 39.0
Sopen02g021560 Solanum pennellii HOM05D000828 ORTHO05D000623 2.3e-06 56.2 82 39.0
PSO135G0104 Papaver somniferum HOM05D000828 ORTHO05D000623 3.0e-06 55.8 85 38.8
PSO724G0291 Papaver somniferum HOM05D000828 ORTHO05D000623 3.0e-06 55.8 84 38.1
CDE10G0387 Ceratophyllum demersum HOM05D000828 ORTHO05D000623 4.0e-06 55.5 83 38.6
Lsat_1_v5_gn_9_99780 Lactuca sativa HOM05D000828 ORTHO05D000623 4.0e-06 55.5 85 38.8
CDE03G0485 Ceratophyllum demersum HOM05D000044 ORTHO05D000623 5.2e-06 55.1 83 41.0
FAN16G2164 Fragaria x ananassa HOM05D000828 ORTHO05D000623 5.2e-06 55.1 63 47.6
PSO675G4187 Papaver somniferum HOM05D000828 ORTHO05D000623 5.2e-06 55.1 86 36.0
ATR0012G056 Amborella trichopoda HOM05D000828 ORTHO05D000623 6.8e-06 54.7 83 37.3
CDE10G0835 Ceratophyllum demersum HOM05D000160 ORTHO05D000914 6.8e-06 54.7 83 39.8
ClCG03G007610 Citrullus lanatus HOM05D000828 ORTHO05D000623 6.8e-06 54.7 83 39.8
CAN.G370.100 Capsicum annuum HOM05D000828 ORTHO05D000623 8.9e-06 54.3 81 38.3
CsaV3_1G033270 Cucumis sativus L. HOM05D000828 ORTHO05D000623 8.9e-06 54.3 89 36.0
Migut.H01438 Erythranthe guttata HOM05D000828 ORTHO05D000623 8.9e-06 54.3 83 39.8
Nitab4.5_0013297g0020 Nicotiana tabacum HOM05D000828 ORTHO05D000623 8.9e-06 54.3 80 40.0


User provided reference genes

Program Settings