Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51436 Brassica carinata HOM05D006475 ORTHO05D007969 1.5e-85 320.1 252 100.0
BolC1t01287H Brassica oleracea HOM05D006475 ORTHO05D007969 1.5e-85 320.1 252 100.0
A01p11110 Brassica napus HOM05D006475 ORTHO05D007969 1.3e-81 307.0 252 97.2
BraA01t01057Z Brassica rapa HOM05D006475 ORTHO05D007969 1.3e-81 307.0 252 97.2
Sp7g17850 Schrenkiella parvula HOM05D006475 ORTHO05D007969 2.2e-63 246.5 252 86.1
Thhalv10026017m.g Eutrema salsugineum HOM05D006475 ORTHO05D007969 2.5e-59 233.0 253 85.0
Carub.0007s2200 Capsella rubella HOM05D006475 ORTHO05D007969 4.7e-58 228.8 253 84.2
BcaNung04008 Brassica carinata HOM05D006475 ORTHO05D007969 8.0e-58 228.0 207 96.1
AL7G34940 Arabidopsis lyrata HOM05D006475 ORTHO05D007969 1.8e-57 226.9 243 86.0
CARHR226020 Cardamine hirsuta HOM05D006475 ORTHO05D007969 2.0e-56 223.4 240 84.6
Aa31LG6G1840 Aethionema arabicum HOM05D006475 ORTHO05D007969 5.2e-49 198.7 275 74.5
C01p13140 Brassica napus HOM05D006475 ORTHO05D007969 8.3e-47 191.4 179 100.0
AT4G19150 Arabidopsis thaliana HOM05D006475 ORTHO05D007969 2.2e-44 183.3 245 80.0
THA.LOC104812889 Tarenaya hassleriana HOM05D006475 ORTHO05D007969 4.7e-34 149.1 245 72.2
PGR031G1524 Punica granatum HOM05D006475 ORTHO05D007969 1.3e-31 141.0 238 68.5
Nn3g19252 Nelumbo nucifera HOM05D006475 ORTHO05D007969 1.2e-29 134.4 242 66.9
CiPaw.12G072000 Carya illinoinensis HOM05D006475 ORTHO05D007969 2.0e-29 133.7 245 66.1
Thecc.01G139200 Theobroma cacao HOM05D006475 ORTHO05D007969 1.0e-28 131.3 238 66.0
Manes.17G003100 Manihot esculenta HOM05D006475 ORTHO05D007969 1.3e-28 131.0 252 64.3
Actinidia14740 Actinidia chinensis HOM05D006475 ORTHO05D007969 1.7e-28 130.6 249 63.5
Cfa012603 Carpinus fangiana HOM05D006475 ORTHO05D007969 2.9e-28 129.8 247 64.8
Actinidia18163 Actinidia chinensis HOM05D006475 ORTHO05D007969 8.6e-28 128.3 244 64.3
Lj8A334T74 Lonicera japonica HOM05D006475 ORTHO05D007969 1.1e-27 127.9 244 66.0
Rhsim07G0139200 Rhododendron simsii HOM05D006475 ORTHO05D007969 5.6e-27 125.6 244 64.8
AUR62007413 Chenopodium quinoa HOM05D006475 ORTHO05D007969 7.3e-27 125.2 233 65.2
Glyma.01G149900 Glycine max HOM05D006475 ORTHO05D007969 9.5e-27 124.8 250 65.6
RcHm_v2.0_Chr7g0213461 Rosa chinensis HOM05D006475 ORTHO05D007969 9.5e-27 124.8 246 65.0
Sabra03G0070600 Salix brachista HOM05D006475 ORTHO05D007969 1.2e-26 124.4 238 65.1
AUR62027319 Chenopodium quinoa HOM05D006475 ORTHO05D007969 1.6e-26 124.0 241 65.1
Peaxi162Scf00045g00636 Petunia axillaris HOM05D006475 ORTHO05D007969 1.6e-26 124.0 240 65.0
Nitab4.5_0006541g0010 Nicotiana tabacum HOM05D006475 ORTHO05D007969 2.1e-26 123.6 243 64.2
Prupe.5G019900 Prunus persica HOM05D006475 ORTHO05D007969 2.8e-26 123.2 250 64.4
Sopen08g001530 Solanum pennellii HOM05D006475 ORTHO05D007969 1.0e-25 121.3 240 62.9
DCAR_028235 Daucus carota HOM05D006475 ORTHO05D007969 1.8e-25 120.6 246 64.2
unitig_0.g2207 Utricularia gibba HOM05D006475 ORTHO05D007969 2.3e-25 120.2 73 78.1
Ah.12g056010 Amaranthus hybridus HOM05D006475 ORTHO05D007969 4.0e-25 119.4 233 64.4
EL10Ac5g11923 Beta vulgaris HOM05D006475 ORTHO05D007969 4.0e-25 119.4 71 80.3
Cc08_g05010 Coffea canephora HOM05D006475 ORTHO05D007969 4.0e-25 119.4 241 51.0
PGSC0003DMG400018460 Solanum tuberosum HOM05D006475 ORTHO05D007969 4.0e-25 119.4 249 61.8
Duzib187G1769 Durio zibethinus HOM05D006475 ORTHO05D007969 5.2e-25 119.0 233 63.5
PSO675G8107 Papaver somniferum HOM05D006475 ORTHO05D007969 5.2e-25 119.0 77 77.9
Potri.003G103400 Populus trichocarpa HOM05D006475 ORTHO05D007969 5.2e-25 119.0 247 63.2
Cpa.g.sc137.18 Carica papaya HOM05D006475 ORTHO05D007969 6.8e-25 118.6 245 63.7
FAN18G1960 Fragaria x ananassa HOM05D006475 ORTHO05D007969 6.8e-25 118.6 232 65.5
CSS0010448 Camellia sinensis var. sinensis HOM05D006475 ORTHO05D007969 1.5e-24 117.5 236 65.3
Nitab4.5_0001175g0100 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.5e-24 117.5 243 63.0
PSO717G0136 Papaver somniferum HOM05D006475 ORTHO05D007969 1.5e-24 117.5 67 83.6
arahy.Tifrunner.gnm1.ann1.0NMX6V Arachis hypogaea HOM05D006475 ORTHO05D007969 2.0e-24 117.1 264 58.3
arahy.Tifrunner.gnm1.ann1.CC5QNU Arachis hypogaea HOM05D006475 ORTHO05D007969 2.0e-24 117.1 264 58.3
TWI23G0232 Tripterygium wilfordii HOM05D006475 ORTHO05D007969 2.0e-24 117.1 236 62.3
FvH4_5g24000 Fragaria vesca HOM05D006475 ORTHO05D007969 3.4e-24 116.3 232 65.1
FAN04G1597 Fragaria x ananassa HOM05D006475 ORTHO05D007969 3.4e-24 116.3 232 65.1
Phvul.002G128300 Phaseolus vulgaris HOM05D006475 ORTHO05D007969 4.4e-24 115.9 243 64.6
Potri.001G130500 Populus trichocarpa HOM05D006475 ORTHO05D007969 4.4e-24 115.9 252 62.3
TPR.G17268 Trifolium pratense HOM05D006475 ORTHO05D007969 4.4e-24 115.9 72 79.2
Solyc08g005520.3 Solanum lycopersicum HOM05D006475 ORTHO05D007969 5.8e-24 115.5 240 62.5
arahy.Tifrunner.gnm1.ann1.SLXS5Y Arachis hypogaea HOM05D006475 ORTHO05D007969 7.5e-24 115.2 80 73.8
MSTRG.1769 Avicennia marina HOM05D006475 ORTHO05D007969 9.8e-24 114.8 234 65.8
SalBow8G0939 Salvia bowleyana HOM05D006475 ORTHO05D007969 9.8e-24 114.8 249 62.7
arahy.Tifrunner.gnm1.ann1.Y3VSY6 Arachis hypogaea HOM05D006475 ORTHO05D007969 1.3e-23 114.4 69 76.8
FAN08G1612 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.3e-23 114.4 244 63.5
Lsat_1_v5_gn_6_15221 Lactuca sativa HOM05D006475 ORTHO05D007969 1.3e-23 114.4 240 64.6
Ca_25099_v3 Cicer arietinum L. HOM05D006475 ORTHO05D007969 1.7e-23 114.0 252 65.1
GSVIVG01022797001 Vitis vinifera HOM05D006475 ORTHO05D007969 2.2e-23 113.6 78 73.1
CAN.G320.16 Capsicum annuum HOM05D006475 ORTHO05D007969 3.7e-23 112.8 241 62.2
Haze_08058 Corylus avellana HOM05D006475 ORTHO05D007969 3.7e-23 112.8 259 61.0
Lalb_Chr05g0215421 Lupinus albus HOM05D006475 ORTHO05D007969 3.7e-23 112.8 262 60.3
VMungo1215G2540 Vigna mungo HOM05D006475 ORTHO05D007969 3.7e-23 112.8 246 64.2
Aqoxy7G00886 Aquilegia oxysepala HOM05D006475 ORTHO05D007969 4.9e-23 112.5 76 75.0
FAN13G3229 Fragaria x ananassa HOM05D006475 ORTHO05D007969 4.9e-23 112.5 244 62.3
Medtr5g026800 Medicago truncatula HOM05D006475 ORTHO05D007969 6.4e-23 112.1 268 61.6
Haze_08048 Corylus avellana HOM05D006475 ORTHO05D007969 1.4e-22 110.9 267 59.2
Gohir.D03G018700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 1.4e-22 110.9 72 73.6
Gohir.A05G381700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 1.9e-22 110.5 238 63.4
Gorai.012G037900 Gossypium raimondii HOM05D006475 ORTHO05D007969 1.9e-22 110.5 238 63.4
Hund11101 Selenicereus undatus HOM05D006475 ORTHO05D007969 1.9e-22 110.5 247 61.1
CANSAT21G0913 Cannabis sativa HOM05D006475 ORTHO05D007969 4.1e-22 109.4 212 67.0
Ciclev10005760m.g Citrus clementina HOM05D006475 ORTHO05D007969 4.1e-22 109.4 235 64.3
Migut.E01351 Erythranthe guttata HOM05D006475 ORTHO05D007969 4.1e-22 109.4 78 70.5
Eucgr.D02591 Eucalyptus grandis HOM05D006475 ORTHO05D007969 4.1e-22 109.4 249 61.4
Gohir.D04G033600 Gossypium hirsutum HOM05D006475 ORTHO05D007969 7.0e-22 108.6 238 63.0
SGA_v2.0_scaffold144G35881 Striga asiatica HOM05D006475 ORTHO05D007969 7.0e-22 108.6 235 64.3
HPP92_021118 Vanilla planifolia HOM05D006475 ORTHO05D007969 9.2e-22 108.2 74 68.9
C03p81780 Brassica napus HOM05D006475 ORTHO05D007969 2.0e-21 107.1 73 78.1
HanXRQChr08g0226771 Helianthus annuus HOM05D006475 ORTHO05D007969 1.0e-20 104.8 250 61.2
Hma1.2p1_0544F.1_g175570 Hydrangea macrophylla HOM05D006475 ORTHO05D007969 1.0e-20 104.8 253 59.3
BolC3t20450H Brassica oleracea HOM05D006475 ORTHO05D007969 1.7e-20 104.0 73 76.7
arahy.Tifrunner.gnm1.ann1.17PB5S Arachis hypogaea HOM05D006475 ORTHO05D007969 3.0e-20 103.2 213 64.3
Psat2g142320 Pisum sativum HOM05D006475 ORTHO05D007969 3.0e-20 103.2 64 79.7
Glyma.09G214000 Glycine max HOM05D006475 ORTHO05D007969 1.1e-19 101.3 246 61.4
Dinv28010 Davidia involucrata HOM05D006475 ORTHO05D007969 1.5e-19 100.9 64 75.0
CDE11G0189 Ceratophyllum demersum HOM05D006475 ORTHO05D007969 5.6e-19 99.0 240 60.4
ECA233G2922 Erigeron canadensis HOM05D006475 ORTHO05D007969 7.3e-19 98.6 249 47.8
Zm00001eb025510 Zea mays HOM05D006475 ORTHO05D007969 7.3e-19 98.6 233 63.5
vmacro17427 Vaccinium macrocarpon HOM05D006475 ORTHO05D007969 9.5e-19 98.2 292 54.8
AagrBONN_evm.TU.Sc2ySwM_228.4166 Anthoceros agrestis HOM05D006475 ORTHO05D007969 2.1e-18 97.1 73 61.6
SEGI_07236 Sequoiadendron giganteum HOM05D006475 ORTHO05D007969 6.8e-17 92.0 80 58.8
Lj2g0004034 Lotus japonicus HOM05D006475 ORTHO05D007969 8.9e-17 91.7 56 82.1
Mapoly0051s0035 Marchantia polymorpha HOM05D006475 ORTHO05D007969 2.0e-16 90.5 68 63.2
Os10g0580700 Oryza sativa ssp. japonica HOM05D006475 ORTHO05D007969 8.3e-15 85.1 234 58.5
arahy.Tifrunner.gnm1.ann1.X7UPX8 Arachis hypogaea HOM05D006475 ORTHO05D007969 1.9e-11 73.9 228 55.7
ClCG10G015530 Citrullus lanatus HOM05D000058 ORTHO05D000077 2.5e-11 73.6 54 64.8
QL08p050707 Quercus lobata HOM05D006475 ORTHO05D007969 7.3e-11 72.0 201 64.7
CsaV3_3G040920 Cucumis sativus L. HOM05D006475 ORTHO05D007969 1.2e-10 71.2 262 53.4
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 1.8e-09 67.4 47 76.6
Pp3c7_14210 Physcomitrium patens HOM05D006475 ORTHO05D007969 1.8e-09 67.4 51 54.9
TAR375G0514 Trochodendron aralioides HOM05D006475 ORTHO05D007969 5.2e-09 65.9 205 62.9
Nitab4.5_0000532g0060 Nicotiana tabacum HOM05D006475 ORTHO05D007969 8.9e-09 65.1 34 79.4
CBR_g41202 Chara braunii HOM05D006475 ORTHO05D007969 1.2e-08 64.7 45 64.4
FAN18G4370 Fragaria x ananassa HOM05D006475 ORTHO05D007969 5.8e-08 62.4 198 62.6
arahy.Tifrunner.gnm1.ann1.79230D Arachis hypogaea HOM05D006475 ORTHO05D007969 4.9e-07 59.3 204 40.7
Sed0010053 Sechium edule HOM05D006475 ORTHO05D007969 8.3e-07 58.5 261 51.7
Gohir.D08G138080 Gossypium hirsutum HOM05D006475 ORTHO05D007969 1.1e-06 58.2 36 75.0
Gorai.004G141500 Gossypium raimondii HOM05D006475 ORTHO05D007969 1.9e-06 57.4 36 75.0


User provided reference genes

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