Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51434 Brassica carinata HOM05D006098 ORTHO05D007470 3.0e-246 854.7 443 100.0
C01p13160 Brassica napus HOM05D006098 ORTHO05D007470 7.5e-245 850.1 444 99.8
BolC1t01289H Brassica oleracea HOM05D006098 ORTHO05D007470 6.0e-242 840.5 449 98.0
BraA01t01058Z Brassica rapa HOM05D006098 ORTHO05D007470 3.0e-217 758.4 444 91.9
BcaNung04007 Brassica carinata HOM05D006098 ORTHO05D007470 4.7e-215 751.1 463 89.0
A01p11120 Brassica napus HOM05D006098 ORTHO05D007470 3.3e-208 728.4 462 86.4
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 3.9e-185 651.7 487 76.2
Thhalv10025127m.g Eutrema salsugineum HOM05D006098 ORTHO05D007470 4.1e-174 615.1 470 76.2
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 1.4e-163 580.1 460 73.0
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 7.2e-163 577.8 465 71.8
A08p14200 Brassica napus HOM05D006098 ORTHO05D007470 1.2e-162 577.0 461 72.2
BraA08t33414Z Brassica rapa HOM05D006098 ORTHO05D007470 1.2e-162 577.0 461 72.2
BcaC01g00601 Brassica carinata HOM05D006098 ORTHO05D007470 2.7e-162 575.9 448 73.2
BolC3t20457H Brassica oleracea HOM05D006098 ORTHO05D007470 1.4e-161 573.5 455 72.5
C03p81800 Brassica napus HOM05D006098 ORTHO05D007470 8.8e-161 570.9 442 73.3
Carub.0007s2199 Capsella rubella HOM05D006098 ORTHO05D007470 1.5e-160 570.1 467 70.7
BcaB04g18531 Brassica carinata HOM05D006098 ORTHO05D007470 5.3e-158 561.6 467 71.3
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 3.5e-149 532.3 472 65.5
CARHR226030 Cardamine hirsuta HOM05D006098 ORTHO05D007470 2.1e-146 523.1 501 64.1
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 4.7e-146 521.9 451 66.3
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 2.0e-128 463.4 426 61.7
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 1.9e-126 456.8 408 61.5
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 2.4e-126 456.4 423 61.7
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 1.6e-125 453.8 406 63.3
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 2.3e-124 449.9 404 63.4
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 8.6e-124 448.0 424 60.4
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 1.9e-123 446.8 394 63.5
Gohir.A08G150000 Gossypium hirsutum HOM05D006098 ORTHO05D007470 4.3e-123 445.7 410 60.5
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 1.6e-122 443.7 407 60.4
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 2.8e-122 443.0 412 60.9
EL10Ac5g12579 Beta vulgaris HOM05D006098 ORTHO05D007470 4.7e-122 442.2 415 61.0
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 6.2e-122 441.8 406 61.8
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 1.8e-121 440.3 418 59.3
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 1.8e-121 440.3 427 59.3
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 2.3e-121 439.9 402 61.7
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 5.2e-121 438.7 442 58.4
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 1.5e-120 437.2 443 57.6
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 2.6e-120 436.4 405 59.8
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 7.5e-120 434.9 403 61.3
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.3e-119 434.1 424 59.0
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 3.7e-119 432.6 447 56.8
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 1.1e-118 431.0 441 57.1
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 1.9e-118 430.3 409 59.9
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 1.2e-117 427.6 460 55.9
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 2.1e-117 426.8 463 54.9
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 3.5e-117 426.0 409 59.4
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 3.5e-117 426.0 409 59.4
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 4.6e-117 425.6 383 62.1
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 2.3e-116 423.3 383 62.1
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 3.9e-116 422.5 450 56.4
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 8.6e-116 421.4 430 57.2
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 1.1e-115 421.0 386 60.9
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 2.5e-115 419.9 387 60.7
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 2.5e-115 419.9 390 60.8
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 4.3e-115 419.1 454 55.3
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 4.3e-115 419.1 408 58.3
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 7.3e-115 418.3 385 61.6
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 9.5e-115 417.9 392 59.9
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 1.2e-114 417.5 362 63.3
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.6e-114 417.2 383 61.1
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 1.1e-113 414.5 390 59.7
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 1.4e-113 414.1 438 55.7
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.8e-113 413.7 390 60.3
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 1.8e-113 413.7 409 57.0
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 4.0e-113 412.5 385 60.5
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 4.0e-113 412.5 419 56.3
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 4.0e-113 412.5 378 61.4
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 5.2e-113 412.1 375 61.1
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 6.8e-113 411.8 390 59.5
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 6.8e-113 411.8 439 56.5
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 8.9e-113 411.4 390 60.3
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 1.5e-112 410.6 456 55.5
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 5.8e-112 408.7 382 59.2
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 7.6e-112 408.3 469 53.9
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 1.3e-111 407.5 418 57.4
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 2.2e-111 406.8 385 60.0
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 4.9e-111 405.6 423 56.0
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 4.9e-111 405.6 375 60.0
Dinv37422 Davidia involucrata HOM05D006098 ORTHO05D007470 8.3e-111 404.8 357 62.5
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 8.3e-111 404.8 370 60.3
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 3.2e-110 402.9 409 56.0
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 2.7e-109 399.8 392 57.7
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 6.0e-109 398.7 382 59.2
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 7.8e-109 398.3 474 51.3
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 7.8e-109 398.3 385 58.7
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.3e-108 397.5 387 58.7
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 3.3e-107 392.9 474 51.1
ATR0568G039 Amborella trichopoda HOM05D006098 ORTHO05D007470 5.6e-107 392.1 442 52.0
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 5.6e-107 392.1 343 64.1
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 7.3e-107 391.7 384 58.6
Sabra03G0019100 Salix brachista HOM05D006098 ORTHO05D007470 9.6e-107 391.3 486 50.2
PSO541G2197 Papaver somniferum HOM05D006098 ORTHO05D007470 1.6e-106 390.6 421 53.2
Gohir.A12G202400 Gossypium hirsutum HOM05D006098 ORTHO05D007470 2.1e-106 390.2 343 63.6
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 2.1e-106 390.2 379 59.4
Nitab4.5_0001175g0140 Nicotiana tabacum HOM05D006098 ORTHO05D007470 3.6e-106 389.4 402 56.0
PSO675G7908 Papaver somniferum HOM05D006098 ORTHO05D007470 5.2e-105 385.6 385 56.4
unitig_37.g12121 Utricularia gibba HOM05D006098 ORTHO05D007470 5.4e-102 375.6 374 56.7
CDE01G0744 Ceratophyllum demersum HOM05D006098 ORTHO05D007470 2.3e-100 370.2 372 56.5
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 1.4e-97 360.9 395 51.6
Manes.17G016300 Manihot esculenta HOM05D006098 ORTHO05D007470 2.4e-97 360.1 341 57.5
SalBow8G2199 Salvia bowleyana HOM05D006098 ORTHO05D007470 9.6e-91 338.2 391 52.4
Peaxi162Scf00876g00435 Petunia axillaris HOM05D006098 ORTHO05D007470 3.0e-84 316.6 374 51.6
PGSC0003DMG400016110 Solanum tuberosum HOM05D006098 ORTHO05D007470 5.6e-83 312.4 324 54.9
Sopen08g024170 Solanum pennellii HOM05D006098 ORTHO05D007470 7.4e-83 312.0 324 54.6
Gohir.D08G171101 Gossypium hirsutum HOM05D006098 ORTHO05D007470 5.1e-76 289.3 237 63.7
CAN.G947.35 Capsicum annuum HOM05D006098 ORTHO05D007470 5.3e-73 279.3 359 47.9
FAN27G0800 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.2e-69 268.1 286 56.3
MSTRG.13909 Avicennia marina HOM05D006098 ORTHO05D007470 4.5e-64 249.6 229 58.5
AagrBONN_evm.TU.Sc2ySwM_368.631 Anthoceros agrestis HOM05D006098 ORTHO05D007470 1.3e-55 221.5 361 39.6
Pp3c12_14620 Physcomitrium patens HOM05D006098 ORTHO05D007470 3.6e-45 186.8 398 34.4
FvH4_2g37180 Fragaria vesca HOM05D006098 ORTHO05D007470 2.6e-43 180.6 139 66.2
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 2.2e-42 177.6 384 33.6
HanXRQChr05g0158621 Helianthus annuus HOM05D006098 ORTHO05D007470 3.7e-42 176.8 157 66.9
HanXRQChr09g0271561 Helianthus annuus HOM05D006098 ORTHO05D007470 9.8e-35 152.1 117 65.8
Hund11040 Selenicereus undatus HOM05D006098 ORTHO05D007470 4.2e-30 136.7 171 52.0
HanXRQChr11g0344761 Helianthus annuus HOM05D006098 ORTHO05D007470 5.5e-30 136.3 124 61.3
Oeu042198.1 Olea europaea HOM05D006098 ORTHO05D007470 4.0e-28 130.2 237 39.2
Oeu015533.1 Olea europaea HOM05D006098 ORTHO05D007470 4.4e-27 126.7 163 45.4
Eucgr.D02550 Eucalyptus grandis HOM05D006098 ORTHO05D007470 1.3e-26 125.2 131 56.5
Pp3c4_2130 Physcomitrium patens HOM05D006098 ORTHO05D007470 7.0e-25 119.4 330 30.3
Rhsim11G0035700 Rhododendron simsii HOM05D006098 ORTHO05D007470 3.0e-20 104.0 163 44.2
Peaxi162Scf00527g00718 Petunia axillaris HOM05D006098 ORTHO05D007470 4.0e-20 103.6 201 33.3
Eucgr.D02551 Eucalyptus grandis HOM05D006098 ORTHO05D007470 8.9e-20 102.4 99 61.6
RcHm_v2.0_Chr4g0402301 Rosa chinensis HOM05D006098 ORTHO05D007470 4.1e-17 93.6 98 51.0
Aa31sc19G30 Aethionema arabicum HOM05D006098 ORTHO05D007470 5.6e-14 83.2 216 33.8
Cre14.g621850 Chlamydomonas reinhardtii HOM05D006098 ORTHO05D007470 2.8e-13 80.9 230 29.6
HanXRQChr11g0344831 Helianthus annuus HOM05D006098 ORTHO05D007470 8.0e-13 79.3 78 56.4
MCO08G142 Micromonas commoda HOM05D020588 ORTHO05D021297 1.3e-07 62.0 115 30.4
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 6.6e-07 59.7 231 25.5
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 6.6e-07 59.7 251 25.9
Aa31LG3G3710 Aethionema arabicum HOM05D006098 ORTHO05D007470 2.5e-06 57.8 61 55.7
Prupe.1G352900 Prunus persica HOM05D006098 ORTHO05D007470 5.6e-06 56.6 62 58.1
Nitab4.5_0000307g0260 Nicotiana tabacum HOM05D007414 ORTHO05D009482 9.5e-06 55.8 257 23.3


User provided reference genes

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