Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51414 Brassica carinata HOM05D007311 ORTHO05D009011 3.7e-79 298.1 148 100.0
BraA01t01079Z Brassica rapa HOM05D007311 ORTHO05D009011 1.4e-78 296.2 148 98.6
C01p13360 Brassica napus HOM05D007311 ORTHO05D009011 1.8e-78 295.8 148 99.3
A01p11360 Brassica napus HOM05D000351 ORTHO05D009011 3.1e-78 295.0 148 98.0
BcaNung01781 Brassica carinata HOM05D007311 ORTHO05D009011 4.2e-75 284.6 148 95.3
Sp7g18020 Schrenkiella parvula HOM05D007311 ORTHO05D009011 5.5e-75 284.3 148 93.9
Thhalv10024796m.g Eutrema salsugineum HOM05D000351 ORTHO05D009011 2.1e-74 282.3 148 94.6
CARHR226190 Cardamine hirsuta HOM05D007311 ORTHO05D009011 4.7e-74 281.2 148 92.6
AT4G19400 Arabidopsis thaliana HOM05D007311 ORTHO05D009011 1.1e-72 276.6 149 91.9
AT4G19410 Arabidopsis thaliana HOM05D000351 ORTHO05D009011 1.1e-72 276.6 149 91.9
Carub.0007s2183 Capsella rubella HOM05D007311 ORTHO05D009011 4.4e-72 274.6 149 90.6
AL7G34740 Arabidopsis lyrata HOM05D007311 ORTHO05D009011 1.3e-71 273.1 149 90.6
THA.LOC104811225 Tarenaya hassleriana HOM05D007311 ORTHO05D009011 1.7e-68 262.7 148 85.1
Aa31LG6G2000 Aethionema arabicum HOM05D007311 ORTHO05D009011 9.7e-64 246.9 148 77.0
Lalb_Chr15g0076111 Lupinus albus HOM05D007311 ORTHO05D009011 5.2e-57 224.6 148 70.3
PGR031G0344 Punica granatum HOM05D007311 ORTHO05D009011 6.7e-57 224.2 148 70.3
QL12p002522 Quercus lobata HOM05D007311 ORTHO05D009011 6.7e-57 224.2 148 70.3
Glyma.03G249600 Glycine max HOM05D007311 ORTHO05D009011 1.2e-56 223.4 148 70.3
Glyma.19G247100 Glycine max HOM05D007311 ORTHO05D009011 1.2e-56 223.4 148 70.3
RcHm_v2.0_Chr7g0214961 Rosa chinensis HOM05D007311 ORTHO05D009011 1.2e-56 223.4 148 70.9
GSVIVG01036913001 Vitis vinifera HOM05D007311 ORTHO05D009011 2.0e-56 222.6 148 69.6
CiPaw.11G077300 Carya illinoinensis HOM05D007311 ORTHO05D009011 3.3e-56 221.9 148 69.6
TWI32G0505 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 3.3e-56 221.9 148 68.9
arahy.Tifrunner.gnm1.ann1.C28JQA Arachis hypogaea HOM05D007311 ORTHO05D009011 7.5e-56 220.7 148 68.9
arahy.Tifrunner.gnm1.ann1.M0M2WX Arachis hypogaea HOM05D007311 ORTHO05D009011 7.5e-56 220.7 148 68.9
Phvul.006G104200 Phaseolus vulgaris HOM05D007311 ORTHO05D009011 1.3e-55 219.9 148 70.3
Lj1g0003439 Lotus japonicus HOM05D007311 ORTHO05D009011 6.3e-55 217.6 148 68.2
VMungo0540G0453 Vigna mungo HOM05D007311 ORTHO05D009011 8.2e-55 217.2 148 68.9
Prupe.5G015700 Prunus persica HOM05D007311 ORTHO05D009011 1.1e-54 216.9 148 70.3
FAN08G0573 Fragaria x ananassa HOM05D007311 ORTHO05D009011 1.4e-54 216.5 144 70.1
Gohir.D08G169100 Gossypium hirsutum HOM05D007311 ORTHO05D009011 1.4e-54 216.5 148 67.6
Psat0s3161g0160 Pisum sativum HOM05D007311 ORTHO05D009011 1.4e-54 216.5 148 70.3
MD16G1286900 Malus domestica HOM05D007311 ORTHO05D009011 2.4e-54 215.7 148 68.2
Ca_09529_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 3.1e-54 215.3 148 69.6
Nn3g18546 Nelumbo nucifera HOM05D007311 ORTHO05D009011 3.1e-54 215.3 147 70.7
Cfa012633 Carpinus fangiana HOM05D007311 ORTHO05D009011 5.3e-54 214.5 141 68.8
TPR.G7011 Trifolium pratense HOM05D007311 ORTHO05D009011 7.0e-54 214.2 148 67.6
COL.COLO4_16729 Corchorus olitorius HOM05D007311 ORTHO05D009011 1.2e-53 213.4 148 65.5
Aqoxy102s011 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 1.6e-53 213.0 148 66.2
Aqoxy2G03516 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 1.6e-53 213.0 148 66.2
Duzib205G2009 Durio zibethinus HOM05D007311 ORTHO05D009011 2.0e-53 212.6 148 65.5
Manes.15G187600 Manihot esculenta HOM05D007311 ORTHO05D009011 2.7e-53 212.2 148 66.9
ClCG07G011190 Citrullus lanatus HOM05D000351 ORTHO05D000250 1.0e-52 210.3 148 65.5
Ciclev10002031m.g Citrus clementina HOM05D007311 ORTHO05D009011 1.0e-52 210.3 148 66.9
MELO3C016211.2 Cucumis melo HOM05D007311 ORTHO05D009011 1.3e-52 209.9 148 65.5
Gohir.A08G147900 Gossypium hirsutum HOM05D007311 ORTHO05D009011 1.3e-52 209.9 148 66.9
AUR62039076 Chenopodium quinoa HOM05D007311 ORTHO05D009011 1.7e-52 209.5 148 66.9
DCAR_030948 Daucus carota HOM05D007311 ORTHO05D009011 2.2e-52 209.1 148 68.2
FAN18G0784 Fragaria x ananassa HOM05D007311 ORTHO05D009011 2.2e-52 209.1 172 59.9
CsaV3_4G007060 Cucumis sativus L. HOM05D007311 ORTHO05D009011 3.8e-52 208.4 148 64.9
Sed0011898 Sechium edule HOM05D000351 ORTHO05D000250 5.0e-52 208.0 145 65.5
MSTRG.1753 Avicennia marina HOM05D007311 ORTHO05D009011 6.5e-52 207.6 148 65.5
Lsat_1_v5_gn_9_12020 Lactuca sativa HOM05D007311 ORTHO05D009011 6.5e-52 207.6 148 63.5
FvH4_5g24490 Fragaria vesca HOM05D007311 ORTHO05D009011 2.5e-51 205.7 172 58.7
Peaxi162Scf00330g01216 Petunia axillaris HOM05D007311 ORTHO05D009011 4.2e-51 204.9 146 64.4
Medtr7g115450 Medicago truncatula HOM05D007311 ORTHO05D009011 5.5e-51 204.5 148 64.9
Medtr7g115470 Medicago truncatula HOM05D007311 ORTHO05D009011 5.5e-51 204.5 148 64.9
EL10Ac9g22274 Beta vulgaris HOM05D007311 ORTHO05D009011 9.4e-51 203.8 148 64.9
Eucgr.E01832 Eucalyptus grandis HOM05D007311 ORTHO05D009011 1.2e-50 203.4 149 64.4
Cc01_g03300 Coffea canephora HOM05D007311 ORTHO05D009011 1.6e-50 203.0 148 66.2
Hma1.2p1_0294F.1_g116450 Hydrangea macrophylla HOM05D007311 ORTHO05D009011 2.7e-50 202.2 145 66.2
ECA233G4235 Erigeron canadensis HOM05D007311 ORTHO05D009011 3.6e-50 201.8 151 63.6
PSO210G1792 Papaver somniferum HOM05D007311 ORTHO05D009011 3.6e-50 201.8 146 63.0
SalBow3G0367 Salvia bowleyana HOM05D007311 ORTHO05D009011 3.6e-50 201.8 146 65.1
Thecc.03G322100 Theobroma cacao HOM05D007311 ORTHO05D009011 3.6e-50 201.8 154 64.3
Potri.003G106700 Populus trichocarpa HOM05D007311 ORTHO05D009011 4.7e-50 201.4 149 65.1
Migut.E01383 Erythranthe guttata HOM05D007311 ORTHO05D009011 6.1e-50 201.1 148 61.5
HanXRQChr07g0198461 Helianthus annuus HOM05D007311 ORTHO05D009011 8.0e-50 200.7 149 63.1
TAR629G0827 Trochodendron aralioides HOM05D007311 ORTHO05D009011 1.0e-49 200.3 148 64.2
PSO238G0022 Papaver somniferum HOM05D007311 ORTHO05D009011 2.3e-49 199.1 146 62.3
Haze_08033 Corylus avellana HOM05D007311 ORTHO05D009011 4.0e-49 198.4 213 49.3
Oeu031947.3 Olea europaea HOM05D007311 ORTHO05D009011 4.0e-49 198.4 168 58.3
CANSAT35G1819 Cannabis sativa HOM05D000351 ORTHO05D000250 1.2e-48 196.8 153 60.1
Nitab4.5_0000623g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 1.2e-48 196.8 146 61.0
Hund06317 Selenicereus undatus HOM05D007311 ORTHO05D009011 1.5e-48 196.4 148 62.2
Gorai.004G176300 Gossypium raimondii HOM05D007311 ORTHO05D009011 5.7e-48 194.5 186 53.8
CDE11G0786 Ceratophyllum demersum HOM05D007311 ORTHO05D009011 1.3e-47 193.4 148 58.8
Sabra03G0073500 Salix brachista HOM05D007311 ORTHO05D009011 1.3e-47 193.4 149 61.7
vmacro22112 Vaccinium macrocarpon HOM05D007311 ORTHO05D009011 1.7e-47 193.0 171 59.1
Nitab4.5_0007008g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 4.8e-47 191.4 146 58.9
HPP92_005283 Vanilla planifolia HOM05D007311 ORTHO05D009011 8.3e-47 190.7 144 59.0
SGA_v2.0_scaffold144G35891 Striga asiatica HOM05D007311 ORTHO05D009011 1.8e-46 189.5 165 57.6
Solyc08g075070.3 Solanum lycopersicum HOM05D007311 ORTHO05D009011 3.1e-46 188.7 146 60.3
CAN.G22.34 Capsicum annuum HOM05D007311 ORTHO05D009011 1.2e-45 186.8 146 58.9
unitig_899.g14733 Utricularia gibba HOM05D007311 ORTHO05D009011 1.6e-45 186.4 149 59.7
Sc18g0005580 Simmondsia chinensis HOM05D007311 ORTHO05D009011 7.7e-45 184.1 132 63.6
Cpa.g.sc542.2 Carica papaya HOM05D007311 ORTHO05D009011 2.3e-44 182.6 124 68.5
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 1.5e-43 179.9 131 62.6
ATR0796G066 Amborella trichopoda HOM05D007311 ORTHO05D009011 4.2e-43 178.3 143 56.6
Zm00001eb284430 Zea mays HOM05D007311 ORTHO05D009011 1.2e-42 176.8 145 53.1
QL12p002612 Quercus lobata HOM05D007311 ORTHO05D009011 1.4e-41 173.3 147 56.5
AUR62010310 Chenopodium quinoa HOM05D007311 ORTHO05D009011 1.8e-41 172.9 120 65.8
PGSC0003DMG400020814 Solanum tuberosum HOM05D007311 ORTHO05D009011 8.9e-41 170.6 174 50.0
CSS0046759 Camellia sinensis var. sinensis HOM05D007311 ORTHO05D009011 1.1e-38 163.7 111 70.3
Os05g0241400 Oryza sativa ssp. japonica HOM05D007311 ORTHO05D009011 5.0e-36 154.8 119 56.3
Dinv37446 Davidia involucrata HOM05D007311 ORTHO05D009011 6.1e-34 147.9 104 66.3
Ah.01g011070 Amaranthus hybridus HOM05D007311 ORTHO05D009011 4.9e-31 138.3 104 61.5
BcaC02g07636 Brassica carinata HOM05D007311 ORTHO05D009011 1.2e-29 133.7 103 74.8
TWI60G1527 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 3.5e-29 132.1 148 48.0
AagrBONN_evm.TU.Sc2ySwM_228.4293 Anthoceros agrestis HOM05D007311 ORTHO05D009011 3.3e-27 125.6 145 37.9
SEGI_31752 Sequoiadendron giganteum HOM05D007311 ORTHO05D009011 3.6e-26 122.1 101 51.5
Sopen08g023700 Solanum pennellii HOM05D007311 ORTHO05D009011 6.2e-26 121.3 92 58.7
Eucgr.E01790 Eucalyptus grandis HOM05D007311 ORTHO05D009011 1.9e-22 109.8 82 59.8
Eucgr.E01869 Eucalyptus grandis HOM05D007311 ORTHO05D009011 8.1e-18 94.4 66 66.7
SMO139G0010 Selaginella moellendorffii HOM05D007311 ORTHO05D009011 8.9e-17 90.9 151 32.5
Rhsim07G0141400 Rhododendron simsii HOM05D000351 ORTHO05D000250 4.4e-16 88.6 123 45.5
SalBow1G6002 Salvia bowleyana HOM05D007311 ORTHO05D009011 7.5e-16 87.8 64 62.5
SalBow8G5581 Salvia bowleyana HOM05D007311 ORTHO05D009011 1.3e-15 87.0 65 60.0
Mapoly0040s0015 Marchantia polymorpha HOM05D007311 ORTHO05D009011 2.4e-14 82.8 146 30.1
Medtr5g045430 Medicago truncatula HOM05D007311 ORTHO05D009011 3.5e-13 79.0 66 59.1
Zm00001eb347540 Zea mays HOM05D007311 ORTHO05D009011 5.1e-12 75.1 66 48.5
FAN13G1634 Fragaria x ananassa HOM05D007311 ORTHO05D009011 1.5e-11 73.6 45 68.9
Ciclev10003443m.g Citrus clementina HOM05D007311 ORTHO05D009011 3.3e-11 72.4 77 41.6
Ca_12103_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 8.1e-10 67.8 38 73.7
Medtr2g084355 Medicago truncatula HOM05D003237 ORTHO05D003631 9.9e-08 60.8 44 70.5


User provided reference genes

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