Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51355 Brassica carinata HOM05D008198 ORTHO05D010220 2.3e-66 255.4 127 100.0
C01p13980 Brassica napus HOM05D008198 ORTHO05D010220 9.9e-65 250.0 127 97.6
BolC1t01365H Brassica oleracea HOM05D008198 ORTHO05D010220 9.9e-65 250.0 127 97.6
A01p11780 Brassica napus HOM05D008198 ORTHO05D010220 4.6e-62 241.1 127 94.5
BraA01t01120Z Brassica rapa HOM05D008198 ORTHO05D010220 4.6e-62 241.1 127 94.5
BcaNung01739 Brassica carinata HOM05D008198 ORTHO05D010220 8.4e-56 220.3 127 87.4
Sp7g18430 Schrenkiella parvula HOM05D008198 ORTHO05D010220 4.0e-50 201.4 127 80.3
Thhalv10026564m.g Eutrema salsugineum HOM05D008198 ORTHO05D010220 1.9e-47 192.6 128 75.0
AL7G33930 Arabidopsis lyrata HOM05D008198 ORTHO05D010220 8.7e-45 183.7 127 72.4
AT4G19980 Arabidopsis thaliana HOM05D008198 ORTHO05D010220 1.9e-44 182.6 126 71.4
CARHR226750 Cardamine hirsuta HOM05D008198 ORTHO05D010220 3.6e-43 178.3 127 74.8
Carub.0007s2117 Capsella rubella HOM05D008198 ORTHO05D010220 3.1e-42 175.3 131 74.0
C03p82100 Brassica napus HOM05D008198 ORTHO05D010220 3.9e-37 158.3 127 67.7
BolC3t20547H Brassica oleracea HOM05D008198 ORTHO05D010220 3.9e-37 158.3 127 67.7
Aa31LG6G2390 Aethionema arabicum HOM05D008198 ORTHO05D010220 3.2e-15 85.5 104 51.9
Potri.001G123300 Populus trichocarpa HOM05D008198 ORTHO05D010220 4.2e-15 85.1 72 59.7
MD10G1229700 Malus domestica HOM05D008198 ORTHO05D010220 5.5e-15 84.7 95 54.7
Sabra01G0095000 Salix brachista HOM05D008198 ORTHO05D010220 7.2e-15 84.3 110 47.3
Thecc.02G006400 Theobroma cacao HOM05D008198 ORTHO05D010220 7.2e-15 84.3 97 49.5
Sabra03G0076400 Salix brachista HOM05D008198 ORTHO05D010220 1.6e-14 83.2 120 45.0
RcHm_v2.0_Chr5g0020591 Rosa chinensis HOM05D008198 ORTHO05D010220 4.6e-14 81.6 90 51.1
Atru.chr10.441 Acer truncatum HOM05D008198 ORTHO05D010220 1.0e-13 80.5 79 50.6
Prupe.4G115000 Prunus persica HOM05D008198 ORTHO05D010220 3.0e-13 79.0 93 51.6
VMungo0251G3138 Vigna mungo HOM05D008198 ORTHO05D010220 3.0e-13 79.0 99 50.5
Duzib248G0575 Durio zibethinus HOM05D008198 ORTHO05D010220 3.9e-13 78.6 73 53.4
Gohir.D02G239700 Gossypium hirsutum HOM05D008198 ORTHO05D010220 3.9e-13 78.6 92 46.7
Gorai.005G268000 Gossypium raimondii HOM05D008198 ORTHO05D010220 3.9e-13 78.6 92 46.7
FAN21G2662 Fragaria x ananassa HOM05D008198 ORTHO05D010220 5.1e-13 78.2 109 43.1
MD05G1249200 Malus domestica HOM05D008198 ORTHO05D010220 5.1e-13 78.2 74 62.2
Ciclev10017172m.g Citrus clementina HOM05D008198 ORTHO05D010220 1.1e-12 77.0 97 50.5
CiPaw.10G063000 Carya illinoinensis HOM05D008198 ORTHO05D010220 1.9e-12 76.3 100 51.0
Glyma.05G131701 Glycine max HOM05D008198 ORTHO05D010220 1.9e-12 76.3 96 50.0
COL.COLO4_17639 Corchorus olitorius HOM05D008198 ORTHO05D010220 3.3e-12 75.5 124 39.5
FvH4_3g12620 Fragaria vesca HOM05D008198 ORTHO05D010220 3.3e-12 75.5 95 46.3
FAN25G2935 Fragaria x ananassa HOM05D008198 ORTHO05D010220 4.3e-12 75.1 95 46.3
Lj4g0024937 Lotus japonicus HOM05D008198 ORTHO05D010220 5.7e-12 74.7 72 55.6
Dinv09067 Davidia involucrata HOM05D008198 ORTHO05D010220 9.7e-12 73.9 90 50.0
Gohir.A03G217600 Gossypium hirsutum HOM05D008198 ORTHO05D010220 9.7e-12 73.9 71 52.1
Actinidia22419 Actinidia chinensis HOM05D008198 ORTHO05D010220 1.7e-11 73.2 66 60.6
Manes.03G073400 Manihot esculenta HOM05D008198 ORTHO05D010220 1.7e-11 73.2 111 45.0
TWI38G1073 Tripterygium wilfordii HOM05D008198 ORTHO05D010220 1.7e-11 73.2 77 54.5
ClCG01G025660 Citrullus lanatus HOM05D008198 ORTHO05D010220 2.2e-11 72.8 112 42.9
Phvul.002G191200 Phaseolus vulgaris HOM05D008198 ORTHO05D010220 2.2e-11 72.8 72 55.6
CSS0019680 Camellia sinensis var. sinensis HOM05D008198 ORTHO05D010220 2.8e-11 72.4 83 48.2
Ca_18253_v3 Cicer arietinum L. HOM05D008198 ORTHO05D010220 2.8e-11 72.4 79 53.2
Nn7g38206 Nelumbo nucifera HOM05D008198 ORTHO05D010220 2.8e-11 72.4 109 44.0
CiPaw.09G074800 Carya illinoinensis HOM05D008198 ORTHO05D010220 4.8e-11 71.6 95 48.4
Haze_06107 Corylus avellana HOM05D008198 ORTHO05D010220 4.8e-11 71.6 81 49.4
Potri.003G110200 Populus trichocarpa HOM05D008198 ORTHO05D010220 1.8e-10 69.7 113 41.6
QL11p013556 Quercus lobata HOM05D008198 ORTHO05D010220 1.8e-10 69.7 74 54.1
TPR.G11001 Trifolium pratense HOM05D008198 ORTHO05D010220 1.8e-10 69.7 84 48.8
Lalb_Chr07g0188441 Lupinus albus HOM05D008198 ORTHO05D010220 2.4e-10 69.3 88 46.6
Glyma.08G086200 Glycine max HOM05D008198 ORTHO05D010220 1.2e-09 67.0 93 51.6
Eucgr.L01648 Eucalyptus grandis HOM05D008198 ORTHO05D010220 3.4e-09 65.5 69 56.5
PGSC0003DMG400010446 Solanum tuberosum HOM05D008198 ORTHO05D010220 4.5e-09 65.1 102 46.1
Medtr4g094640 Medicago truncatula HOM05D008198 ORTHO05D010220 5.9e-09 64.7 67 53.7
SalBow8G3784 Salvia bowleyana HOM05D008198 ORTHO05D010220 5.9e-09 64.7 63 54.0
Cfa000688 Carpinus fangiana HOM05D008198 ORTHO05D010220 7.7e-09 64.3 80 52.5
Sed0017835 Sechium edule HOM05D008198 ORTHO05D010220 2.9e-08 62.4 111 37.8
Psat7g089000 Pisum sativum HOM05D008198 ORTHO05D010220 6.5e-08 61.2 66 53.0
Sopen02g017700 Solanum pennellii HOM05D008198 ORTHO05D010220 1.9e-07 59.7 81 45.7
Oeu058939.1 Olea europaea HOM05D008198 ORTHO05D010220 5.5e-07 58.2 95 45.3
Migut.M01995 Erythranthe guttata HOM05D008198 ORTHO05D010220 1.6e-06 56.6 76 42.1
Lalb_Chr04g0257791 Lupinus albus HOM05D008198 ORTHO05D010220 6.1e-06 54.7 71 43.7


User provided reference genes

Program Settings