Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51354 Brassica carinata HOM05D007521 ORTHO05D009387 1.1e-122 443.4 220 100.0
BraA01t01121Z Brassica rapa HOM05D007521 ORTHO05D009387 1.8e-114 416.0 227 93.4
C01p13990 Brassica napus HOM05D007521 ORTHO05D009387 1.4e-111 406.4 235 88.9
BolC1t01366H Brassica oleracea HOM05D007521 ORTHO05D009387 1.4e-111 406.4 235 88.9
A01p11790 Brassica napus HOM05D007521 ORTHO05D009387 2.4e-111 405.6 227 92.1
BcaNung01738 Brassica carinata HOM05D007521 ORTHO05D009387 3.6e-107 391.7 246 85.0
Sp7g18440 Schrenkiella parvula HOM05D007521 ORTHO05D009387 3.1e-98 362.1 246 78.5
AL7G33920 Arabidopsis lyrata HOM05D007521 ORTHO05D009387 9.6e-92 340.5 238 79.0
Carub.0007s2116 Capsella rubella HOM05D007521 ORTHO05D009387 2.6e-89 332.4 236 75.8
CARHR226760 Cardamine hirsuta HOM05D007521 ORTHO05D009387 2.7e-86 322.4 237 75.1
Aa31LG6G2400 Aethionema arabicum HOM05D007521 ORTHO05D009387 1.5e-76 290.0 244 64.8
THA.LOC104811673 Tarenaya hassleriana HOM05D007521 ORTHO05D009387 2.0e-65 253.1 238 61.8
Thhalv10026093m.g Eutrema salsugineum HOM05D007521 ORTHO05D009387 2.2e-59 233.0 183 67.8
AT4G19985 Arabidopsis thaliana HOM05D007521 ORTHO05D009387 7.2e-55 218.0 175 70.3
Gorai.009G291900 Gossypium raimondii HOM05D007521 ORTHO05D009387 1.0e-53 214.2 241 49.4
Cpa.g.sc65.80 Carica papaya HOM05D007521 ORTHO05D009387 6.7e-53 211.5 230 47.8
Gohir.D05G278400 Gossypium hirsutum HOM05D007521 ORTHO05D009387 6.7e-53 211.5 240 49.2
Duzib114G0131 Durio zibethinus HOM05D007521 ORTHO05D009387 8.8e-53 211.1 233 48.5
Gohir.A05G276700 Gossypium hirsutum HOM05D007521 ORTHO05D009387 1.1e-52 210.7 240 49.2
QL08p065346 Quercus lobata HOM05D007521 ORTHO05D009387 7.4e-52 208.0 230 49.6
Lalb_Chr11g0067611 Lupinus albus HOM05D007521 ORTHO05D009387 2.8e-51 206.1 229 47.6
TWI09G0709 Tripterygium wilfordii HOM05D007521 ORTHO05D009387 8.2e-51 204.5 221 48.9
Ciclev10033598m.g Citrus clementina HOM05D007521 ORTHO05D009387 1.8e-50 203.4 233 51.1
CiPaw.08G156100 Carya illinoinensis HOM05D007521 ORTHO05D009387 7.0e-50 201.4 233 48.9
Thecc.10G187600 Theobroma cacao HOM05D007521 ORTHO05D009387 1.2e-49 200.7 231 48.5
GSVIVG01032870001 Vitis vinifera HOM05D007521 ORTHO05D009387 7.7e-49 198.0 194 56.2
Potri.019G065400 Populus trichocarpa HOM05D007521 ORTHO05D009387 6.5e-48 194.9 228 50.0
Glyma.04G224700 Glycine max HOM05D007521 ORTHO05D009387 4.2e-47 192.2 219 48.4
FAN10G3062 Fragaria x ananassa HOM05D007521 ORTHO05D009387 9.4e-47 191.0 230 47.8
FvH4_7g26320 Fragaria vesca HOM05D007521 ORTHO05D009387 1.6e-46 190.3 240 47.1
Prupe.2G267400 Prunus persica HOM05D007521 ORTHO05D009387 1.6e-46 190.3 197 51.8
RcHm_v2.0_Chr1g0372781 Rosa chinensis HOM05D007521 ORTHO05D009387 3.6e-46 189.1 230 47.8
arahy.Tifrunner.gnm1.ann1.Q2LGCQ Arachis hypogaea HOM05D007521 ORTHO05D009387 4.7e-46 188.7 223 47.1
Nn2g10221 Nelumbo nucifera HOM05D007521 ORTHO05D009387 4.7e-46 188.7 191 54.5
Lsat_1_v5_gn_8_11100 Lactuca sativa HOM05D007521 ORTHO05D009387 8.0e-46 188.0 203 52.7
TPR.G13979 Trifolium pratense HOM05D007521 ORTHO05D009387 1.4e-45 187.2 223 48.9
MD07G1238600 Malus domestica HOM05D007521 ORTHO05D009387 3.0e-45 186.0 240 45.0
TAR636G2090 Trochodendron aralioides HOM05D007521 ORTHO05D009387 3.0e-45 186.0 191 53.4
CANSAT56G2803 Cannabis sativa HOM05D007521 ORTHO05D009387 4.0e-45 185.7 224 44.6
Eucgr.G03172 Eucalyptus grandis HOM05D007521 ORTHO05D009387 4.0e-45 185.7 232 46.6
Medtr3g093540 Medicago truncatula HOM05D007521 ORTHO05D009387 5.2e-45 185.3 226 47.8
Psat5g070120 Pisum sativum HOM05D007521 ORTHO05D009387 5.2e-45 185.3 220 48.6
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 2.6e-44 183.0 215 48.8
Cc02_g05020 Coffea canephora HOM05D007521 ORTHO05D009387 2.6e-44 183.0 189 51.9
Nitab4.5_0011372g0030 Nicotiana tabacum HOM05D007521 ORTHO05D009387 2.6e-44 183.0 198 52.0
FAN06G0083 Fragaria x ananassa HOM05D007521 ORTHO05D009387 3.3e-44 182.6 249 45.4
PSO384G1785 Papaver somniferum HOM05D007521 ORTHO05D009387 4.4e-44 182.2 191 51.3
ECA233G6052 Erigeron canadensis HOM05D007521 ORTHO05D009387 5.7e-44 181.8 195 51.3
Lj1g0021108 Lotus japonicus HOM05D007521 ORTHO05D009387 1.3e-43 180.6 225 48.0
Cc02_g04870 Coffea canephora HOM05D007521 ORTHO05D009387 2.2e-43 179.9 190 51.6
Phvul.009G041300 Phaseolus vulgaris HOM05D007521 ORTHO05D009387 2.2e-43 179.9 217 49.8
PSO339G2910 Papaver somniferum HOM05D007521 ORTHO05D009387 2.8e-43 179.5 191 50.3
PGSC0003DMG400011658 Solanum tuberosum HOM05D007521 ORTHO05D009387 2.8e-43 179.5 195 52.3
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 8.2e-43 177.9 217 48.4
Atru.BG.268.p Acer truncatum HOM05D007521 ORTHO05D009387 3.1e-42 176.0 190 48.9
Dinv34514 Davidia involucrata HOM05D007521 ORTHO05D009387 5.3e-42 175.3 196 50.5
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 1.2e-41 174.1 195 49.2
PGR142G4361 Punica granatum HOM05D007521 ORTHO05D009387 2.0e-41 173.3 223 44.4
Nitab4.5_0000375g0330 Nicotiana tabacum HOM05D007521 ORTHO05D009387 1.3e-40 170.6 226 46.5
Migut.F00560 Erythranthe guttata HOM05D007521 ORTHO05D009387 2.9e-40 169.5 192 50.0
Hma1.2p1_0264F.1_g105770 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 2.9e-40 169.5 229 46.7
Sabra19G0079100 Salix brachista HOM05D007521 ORTHO05D009387 3.2e-39 166.0 226 44.7
HanXRQChr08g0223011 Helianthus annuus HOM05D007521 ORTHO05D009387 9.4e-39 164.5 194 49.0
CiPaw.08G155800 Carya illinoinensis HOM05D007521 ORTHO05D009387 1.6e-38 163.7 237 44.3
MSTRG.8869 Avicennia marina HOM05D007521 ORTHO05D009387 4.7e-38 162.2 191 47.1
Actinidia31757 Actinidia chinensis HOM05D007521 ORTHO05D009387 8.0e-38 161.4 198 48.5
Sc11g0006120 Simmondsia chinensis HOM05D007521 ORTHO05D009387 8.0e-38 161.4 194 46.9
CSS0047724 Camellia sinensis var. sinensis HOM05D007521 ORTHO05D009387 4.4e-36 155.6 164 53.0
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 1.3e-35 154.1 221 41.2
CDE11G1245 Ceratophyllum demersum HOM05D007521 ORTHO05D009387 3.7e-35 152.5 153 52.3
Aqoxy4G03316 Aquilegia oxysepala HOM05D007521 ORTHO05D009387 1.8e-34 150.2 189 49.2
EL10Ac2g02694 Beta vulgaris HOM05D007521 ORTHO05D009387 1.8e-34 150.2 187 45.5
unitig_37.g11916 Utricularia gibba HOM05D007521 ORTHO05D009387 3.1e-34 149.4 195 44.1
ATR1127G230 Amborella trichopoda HOM05D007521 ORTHO05D009387 5.9e-33 145.2 191 45.5
Zm00001eb284340 Zea mays HOM05D007521 ORTHO05D009387 1.0e-32 144.4 194 46.9
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 1.7e-32 143.7 221 43.4
Peaxi162Scf00167g01120 Petunia axillaris HOM05D007521 ORTHO05D009387 5.5e-31 138.7 169 47.9
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 1.6e-30 137.1 188 46.8
Cfa001178 Carpinus fangiana HOM05D007521 ORTHO05D009387 1.1e-26 124.4 164 47.6
COL.COLO4_19497 Corchorus olitorius HOM05D007521 ORTHO05D009387 2.3e-24 116.7 165 42.4
HPP92_019762 Vanilla planifolia HOM05D007521 ORTHO05D009387 1.2e-22 110.9 168 42.9
AagrBONN_evm.TU.Sc2ySwM_228.2023 Anthoceros agrestis HOM05D007521 ORTHO05D009387 4.0e-21 105.9 180 38.3
Mapoly0070s0078 Marchantia polymorpha HOM05D007521 ORTHO05D009387 5.2e-21 105.5 192 37.0
Pp3c3_11210 Physcomitrium patens HOM05D007521 ORTHO05D009387 8.9e-21 104.8 197 35.0
Manes.10G004400 Manihot esculenta HOM05D007521 ORTHO05D009387 5.7e-20 102.1 161 44.1
Oeu001369.2 Olea europaea HOM05D007521 ORTHO05D009387 2.2e-19 100.1 130 47.7
Sopen05g030700 Solanum pennellii HOM05D007521 ORTHO05D009387 1.8e-18 97.1 133 47.4
Solyc05g052170.4 Solanum lycopersicum HOM05D007521 ORTHO05D009387 3.2e-18 96.3 133 46.6
Actinidia07775 Actinidia chinensis HOM05D007521 ORTHO05D009387 1.2e-17 94.4 80 57.5
Lj8C51T1 Lonicera japonica HOM05D007521 ORTHO05D009387 3.5e-17 92.8 134 45.5
Ah.12g064700 Amaranthus hybridus HOM05D007521 ORTHO05D009387 5.6e-15 85.5 62 62.9
SMO356G0638 Selaginella moellendorffii HOM05D007521 ORTHO05D009387 1.6e-14 84.0 151 37.1
Gohir.D10G155835 Gossypium hirsutum HOM05D007521 ORTHO05D009387 2.1e-14 83.6 58 63.8
Hma1.2p1_0264F.1_g105780 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 4.7e-14 82.4 63 61.9
Hund13426 Selenicereus undatus HOM05D007521 ORTHO05D009387 4.0e-13 79.3 208 31.2
Gorai.007G054900 Gossypium raimondii HOM05D007521 ORTHO05D009387 6.8e-13 78.6 58 60.3
Actinidia01020 Actinidia chinensis HOM05D007521 ORTHO05D009387 9.8e-12 74.7 94 47.9
CBR_g4502 Chara braunii HOM05D007521 ORTHO05D009387 4.9e-11 72.4 86 39.5
Gorai.011G175800 Gossypium raimondii HOM05D007521 ORTHO05D009387 1.9e-10 70.5 58 55.2
Cre10.g464264 Chlamydomonas reinhardtii HOM05D007521 ORTHO05D009387 9.2e-10 68.2 89 38.2
SEGI_30344 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 1.2e-09 67.8 150 36.0
Gohir.D11G050600 Gossypium hirsutum HOM05D007521 ORTHO05D009387 3.5e-09 66.2 50 58.0
CDE04G1691 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 2.3e-08 63.5 84 45.2
SEGI_20264 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 1.1e-07 61.2 44 59.1
Hma1.2p1_0264F.1_g105790 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 2.5e-07 60.1 107 40.2
MBI15_g36681_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D008343 2.1e-06 57.0 81 37.0
Nn2g10236 Nelumbo nucifera HOM05D003003 ORTHO05D008343 2.1e-06 57.0 95 32.6
Atru.chr8.74 Acer truncatum HOM05D003003 ORTHO05D008343 3.6e-06 56.2 81 35.8
Migut.J00015 Erythranthe guttata HOM05D003003 ORTHO05D008343 3.6e-06 56.2 85 36.5
MD04G1177300 Malus domestica HOM05D003003 ORTHO05D008343 3.6e-06 56.2 89 36.0
Nitab4.5_0001215g0150 Nicotiana tabacum HOM05D003003 ORTHO05D008343 3.6e-06 56.2 81 35.8
ClCG04G006230 Citrullus lanatus HOM05D003003 ORTHO05D008343 4.7e-06 55.8 90 33.3
Dinv16947 Davidia involucrata HOM05D003003 ORTHO05D008343 4.7e-06 55.8 86 36.0
Peaxi162Scf00374g00029 Petunia axillaris HOM05D003003 ORTHO05D008343 4.7e-06 55.8 81 34.6
Potri.016G140000 Populus trichocarpa HOM05D003003 ORTHO05D008343 4.7e-06 55.8 81 35.8
CANSAT21G0154 Cannabis sativa HOM05D003003 ORTHO05D008343 6.2e-06 55.5 80 36.2
Duzib151G0009 Durio zibethinus HOM05D003003 ORTHO05D008343 6.2e-06 55.5 89 34.8
FvH4_6g09480 Fragaria vesca HOM05D003003 ORTHO05D008343 6.2e-06 55.5 81 35.8
Gohir.D02G106600 Gossypium hirsutum HOM05D003003 ORTHO05D008343 6.2e-06 55.5 91 35.2
Gorai.005G121100 Gossypium raimondii HOM05D003003 ORTHO05D008343 6.2e-06 55.5 91 35.2
MCO12G079 Micromonas commoda HOM05D003003 ORTHO05D008343 6.2e-06 55.5 90 32.2
Solyc10g074910.2 Solanum lycopersicum HOM05D003003 ORTHO05D008343 6.2e-06 55.5 81 34.6
Sopen10g027400 Solanum pennellii HOM05D003003 ORTHO05D008343 6.2e-06 55.5 81 34.6
BcaC05g27931 Brassica carinata HOM05D003003 ORTHO05D008343 8.1e-06 55.1 83 33.7
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 8.1e-06 55.1 83 33.7
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 8.1e-06 55.1 83 33.7
BraA05t21414Z Brassica rapa HOM05D003003 ORTHO05D008343 8.1e-06 55.1 83 33.7
DCAR_023966 Daucus carota HOM05D003003 ORTHO05D008343 8.1e-06 55.1 83 34.9
ECA248G3306 Erigeron canadensis HOM05D003003 ORTHO05D008343 8.1e-06 55.1 81 35.8
HanXRQChr01g0000501 Helianthus annuus HOM05D003003 ORTHO05D008343 8.1e-06 55.1 89 34.8
Nitab4.5_0007589g0030 Nicotiana tabacum HOM05D003003 ORTHO05D008343 8.1e-06 55.1 81 34.6
QL07p031603 Quercus lobata HOM05D003003 ORTHO05D008343 8.1e-06 55.1 81 35.8
SMO230G0119 Selaginella moellendorffii HOM05D003003 ORTHO05D008343 8.1e-06 55.1 89 34.8


User provided reference genes

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