Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 1.0e-179 633.6 410 100.0
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 8.1e-169 597.4 419 91.9
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 8.1e-169 597.4 419 91.9
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 2.4e-152 542.7 418 85.4
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 4.0e-152 542.0 418 86.8
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 2.1e-140 503.1 425 77.6
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 2.8e-100 369.8 449 62.8
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 2.0e-95 353.6 426 62.9
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 3.6e-92 342.8 422 59.5
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 6.2e-92 342.0 423 59.1
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 8.0e-92 341.7 416 58.7
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 1.0e-91 341.3 417 63.3
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.7e-89 334.0 439 60.6
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 2.6e-82 310.1 440 59.1
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 7.5e-82 308.5 421 57.0
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 9.8e-82 308.1 418 58.1
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 1.4e-80 304.3 443 58.0
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.9e-80 303.9 446 56.5
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 1.0e-78 298.1 412 57.0
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 8.6e-78 295.0 410 55.1
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 8.6e-78 295.0 410 55.1
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 1.5e-77 294.3 412 56.6
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 1.5e-77 294.3 412 56.6
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 5.6e-77 292.4 405 55.8
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 9.9e-58 228.4 454 46.9
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 1.3e-52 211.5 423 48.5
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 6.2e-52 209.1 457 43.8
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 2.4e-43 180.6 422 41.0
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.4e-40 171.4 417 42.4
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 2.5e-40 170.6 408 39.5
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 1.6e-39 167.9 408 39.7
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 3.5e-39 166.8 408 40.2
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 6.0e-39 166.0 408 40.4
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 6.0e-39 166.0 408 40.4
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 2.3e-38 164.1 408 40.2
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 3.4e-34 150.2 421 37.8
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 3.8e-33 146.7 413 36.8
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 2.1e-31 141.0 444 33.1
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 3.5e-31 140.2 415 38.3
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 6.1e-31 139.4 447 33.8
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 6.7e-30 136.0 413 35.1
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 8.7e-30 135.6 416 38.2
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 4.8e-28 129.8 428 32.0
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 6.3e-28 129.4 411 37.2
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 8.2e-28 129.0 406 35.2
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 1.1e-27 128.6 477 30.4
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 1.4e-27 128.3 422 35.3
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 2.4e-27 127.5 406 35.0
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 2.4e-27 127.5 449 31.8
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 6.9e-27 125.9 412 36.2
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 6.9e-27 125.9 441 33.8
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 9.0e-27 125.6 418 33.0
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 1.5e-26 124.8 406 35.2
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 1.7e-25 121.3 409 34.0
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 2.9e-25 120.6 473 31.1
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 2.9e-25 120.6 448 31.7
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 8.5e-25 119.0 451 29.5
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 1.9e-24 117.9 452 30.5
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 1.9e-24 117.9 215 41.4
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 4.2e-24 116.7 410 33.7
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 4.2e-24 116.7 459 33.3
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 9.4e-24 115.5 462 33.8
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 3.6e-23 113.6 294 36.1
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 1.4e-22 111.7 399 30.8
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 2.5e-21 107.5 415 31.3
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 3.3e-21 107.1 418 30.6
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 4.3e-21 106.7 413 34.1
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 4.3e-21 106.7 470 30.6
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 7.4e-21 105.9 455 29.9
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 9.7e-21 105.5 442 33.5
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 2.2e-20 104.4 178 44.9
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 2.2e-20 104.4 464 28.4
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 2.8e-20 104.0 206 40.3
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 4.8e-20 103.2 452 29.6
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 4.8e-20 103.2 482 28.2
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 4.8e-20 103.2 460 30.9
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 4.8e-20 103.2 457 30.6
C02p44970 Brassica napus HOM05D004305 ORTHO05D005159 6.3e-20 102.8 418 32.1
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 8.2e-20 102.4 483 30.6
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.8e-19 101.3 426 31.5
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 2.4e-19 100.9 197 39.1
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 1.2e-18 98.6 521 25.5
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 2.6e-18 97.4 416 28.8
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 4.5e-18 96.7 457 29.1
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 4.5e-18 96.7 408 28.9
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 5.9e-18 96.3 207 41.5
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 5.9e-18 96.3 282 34.8
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 5.9e-18 96.3 268 34.7
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.0e-17 95.5 485 28.0
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 1.3e-17 95.1 281 36.3
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 3.8e-17 93.6 442 30.8
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 5.0e-17 93.2 431 28.5
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 5.0e-17 93.2 408 27.7
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 5.0e-17 93.2 458 28.4
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 8.5e-17 92.4 399 28.8
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 1.4e-16 91.7 458 28.8
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 1.9e-16 91.3 424 28.5
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 1.9e-16 91.3 403 29.5
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.5e-16 90.9 446 29.6
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 3.2e-16 90.5 491 29.1
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 4.2e-16 90.1 237 32.9
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 5.5e-16 89.7 168 42.3
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 7.2e-16 89.4 424 28.3
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.2e-15 88.6 428 27.1
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 1.2e-15 88.6 415 28.4
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 1.6e-15 88.2 477 27.5
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 2.1e-15 87.8 317 30.3
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 2.1e-15 87.8 421 29.0
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.6e-15 87.0 469 26.4
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 7.9e-15 85.9 442 28.5
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 1.4e-14 85.1 419 31.7
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.8e-14 84.7 182 33.5
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 1.8e-14 84.7 415 28.7
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 3.0e-14 84.0 427 29.5
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 5.1e-14 83.2 53 73.6
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 6.7e-14 82.8 462 30.3
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 6.7e-14 82.8 417 29.7
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 1.1e-13 82.0 443 28.2
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 2.0e-13 81.3 331 33.8
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 2.6e-13 80.9 53 73.6
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 2.6e-13 80.9 428 31.8
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 2.6e-13 80.9 489 28.2
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 2.6e-13 80.9 409 31.5
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 3.3e-13 80.5 462 29.7
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 9.7e-13 79.0 429 29.8
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 1.3e-12 78.6 421 28.5
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 2.2e-12 77.8 430 27.2
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 2.8e-12 77.4 54 74.1
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 2.8e-12 77.4 490 27.8
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 3.7e-12 77.0 421 28.7
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 6.3e-12 76.3 408 28.7
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 3.1e-11 73.9 427 25.5
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 4.1e-11 73.6 298 28.2
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 9.1e-11 72.4 53 71.7
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 1.2e-10 72.0 437 27.5
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 2.0e-10 71.2 441 28.6
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 2.0e-10 71.2 419 30.1
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 3.5e-10 70.5 451 27.7
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.0e-09 68.9 238 29.4
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 2.2e-09 67.8 440 26.8
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 2.2e-09 67.8 427 27.4
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 2.2e-09 67.8 432 27.3
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 2.9e-09 67.4 58 60.3
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 3.8e-09 67.0 480 22.9
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 1.1e-08 65.5 169 31.4
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 2.5e-08 64.3 184 31.5
TPR.G30380 Trifolium pratense HOM05D004305 ORTHO05D005159 3.2e-08 63.9 195 37.9
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 7.2e-08 62.8 55 60.0
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 9.4e-08 62.4 436 28.0
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 9.4e-08 62.4 413 25.9
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 2.1e-07 61.2 413 24.5
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 4.7e-07 60.1 410 24.4
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 4.7e-07 60.1 410 24.6
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 1.0e-06 58.9 422 26.3
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 1.0e-06 58.9 54 59.3
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 1.8e-06 58.2 58 56.9


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